Miyakogusa Predicted Gene

Lj6g3v1412720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1412720.1 tr|G8A1U4|G8A1U4_MEDTR Polygalacturonase QRT3
OS=Medicago truncatula GN=MTR_126s0003 PE=4 SV=1,47.2,2e-19,Pectin
lyase-like,Pectin lyase fold/virulence factor; no description,Pectin
lyase fold,gene.g66188.t1.1
         (185 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g035790.1 | polygalacturonase QRT3-like protein | HC | chr...   124   6e-29
Medtr4g094732.1 | polygalacturonase QRT3-like protein | HC | chr...   100   1e-21
Medtr2g035760.1 | polygalacturonase QRT3-like protein | HC | chr...    62   4e-10
Medtr6g015785.1 | polygalacturonase QRT3-like protein | HC | chr...    56   2e-08

>Medtr2g035790.1 | polygalacturonase QRT3-like protein | HC |
           chr2:15178610-15181077 | 20130731
          Length = 488

 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 86/129 (66%), Gaps = 7/129 (5%)

Query: 3   VQDSTCLSEEHIDLSHFRNKLIRHRVGIPLSQAPFTSAPSPS----ETARRGRVVNPIGY 58
           VQ++ C +E H+ LSH   K+ +H+V I LSQ P  S          T + GRVV PI Y
Sbjct: 18  VQETICFNE-HVQLSHLMKKIAKHKVDIALSQPPSPSPSPSPSPSSHTKKSGRVVYPIEY 76

Query: 59  GADPTGADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNYKISKPITF 118
           GADPTG ++SSDA++KA+   F I   +   EL+ G+RDLGGV+ID QGGNYKIS PITF
Sbjct: 77  GADPTGVNESSDAMMKAVEAAFDI--DNLGLELLLGIRDLGGVIIDFQGGNYKISNPITF 134

Query: 119 PSYVGNVVV 127
           PS  GN+VV
Sbjct: 135 PSSSGNLVV 143


>Medtr4g094732.1 | polygalacturonase QRT3-like protein | HC |
           chr4:38860963-38858816 | 20130731
          Length = 480

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/125 (47%), Positives = 79/125 (63%), Gaps = 14/125 (11%)

Query: 6   STCLS--EEHIDLSHFRNKLIRHRVGIPLSQAPFTSAPSPSETARRGRVVNPIGYGADPT 63
           +TC +       LS F++KL + +       +P  S P  S+T    RV+ P  YGADPT
Sbjct: 19  ATCFTFFTREQKLSEFKHKLEQQQA------SPLASPPISSQTKMSNRVLYPSEYGADPT 72

Query: 64  GADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNYKISKPIT-FPSYV 122
           G+++SSDAILK + + F + +     +LVAGV DLGGV+IDLQGG+YKISKPIT  P   
Sbjct: 73  GSEESSDAILKVVEDAFKLQKG---LQLVAGVNDLGGVIIDLQGGDYKISKPITLLPG-- 127

Query: 123 GNVVV 127
           GN+VV
Sbjct: 128 GNIVV 132


>Medtr2g035760.1 | polygalacturonase QRT3-like protein | HC |
           chr2:15158916-15161418 | 20130731
          Length = 497

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 44  SETARRGRVVNPIGYGADPTGADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVI 103
           +E     RV +   YGADPTG  DS++A+L AIA+    G S+ +  L+ G+ +LGG  I
Sbjct: 75  AEGMNNPRVYHVTSYGADPTGNSDSTEALLAAIADA-TNGPSEGY--LMEGISNLGGAQI 131

Query: 104 DLQGGNYKISKPITFP-SYVGNVVV 127
           +L+GGNY I + +  P S VGN+++
Sbjct: 132 NLEGGNYMIRRSLKLPVSGVGNLMI 156


>Medtr6g015785.1 | polygalacturonase QRT3-like protein | HC |
           chr6:5462771-5458842 | 20130731
          Length = 494

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 51/71 (71%), Gaps = 4/71 (5%)

Query: 58  YGADPTGADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNYKISKPIT 117
           YGADPTG  DS+DA+L AIA+    G S  F  L+ G+ DLGG  I+LQGGNY ISKP+ 
Sbjct: 93  YGADPTGNSDSTDALLAAIADAAK-GPSKGF--LMNGIIDLGGAQINLQGGNYLISKPLH 149

Query: 118 FP-SYVGNVVV 127
           FP + VGN+++
Sbjct: 150 FPMAGVGNLMI 160