Miyakogusa Predicted Gene

Lj6g3v1358590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1358590.1 Non Characterized Hit- tr|D7L1Z2|D7L1Z2_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,40.12,3e-18,seg,NULL,CUFF.59390.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g036670.1 | transcription factor/transcription regulator |...   174   3e-44
Medtr4g127700.1 | transcription factor/transcription regulator |...   147   5e-36
Medtr2g083470.1 | transcription factor/transcription regulator, ...    63   1e-10

>Medtr2g036670.1 | transcription factor/transcription regulator | LC
           | chr2:15882680-15883559 | 20130731
          Length = 179

 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 130/192 (67%), Gaps = 23/192 (11%)

Query: 1   MEGQPAKRRRVYSVEPNKVVEAAFARNYMNYLVPALMKIKEINTC--GGDIQNVVKHEVD 58
           MEGQ AKR+RVYSVEPNKVV+A F +NY+NYL PALMKIKE  T     ++++VVK+EVD
Sbjct: 1   MEGQKAKRKRVYSVEPNKVVQAKFTKNYINYLAPALMKIKERRTSIEAKNVESVVKYEVD 60

Query: 59  MAMVSSAQGFAWSNSLKLKLQNQREDIGVSVN--GNTSIPQSPS----SESQA-KILVSK 111
           MAMV S+QGFAWSN+LK KLQ   ++    +N   N  +P   S    S+S+A KILV +
Sbjct: 61  MAMVFSSQGFAWSNALKTKLQKDGDEGSSRINYQQNEMVPLDFSKKICSKSEANKILVEE 120

Query: 112 SKNNDMPTMKRDLXXXXXXXXXXNGQLKSLKRLIPGGEN-MCNDEMVVELESYIGCLQMQ 170
           + + D   +  D             QL+ L++LIPGGE  +C++EMV ELESY+ CLQMQ
Sbjct: 121 NIDGDEDEIVDD-------------QLRCLRKLIPGGEEIICDEEMVNELESYVSCLQMQ 167

Query: 171 VNILQYLADQTS 182
           VNILQ L  QTS
Sbjct: 168 VNILQCLTHQTS 179


>Medtr4g127700.1 | transcription factor/transcription regulator | LC
           | chr4:53071671-53070790 | 20130731
          Length = 163

 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 106/171 (61%), Gaps = 32/171 (18%)

Query: 2   EGQPAKRRRVYSVEPNKVVEAAFARNYMNYLVPALMKIKEINTCGGDIQNVVKHEVDMAM 61
           + Q  KRRRVYSVEPN +V+  FARNY++YLVPALMKIKE N    +    VK+EVDMAM
Sbjct: 3   DAQQNKRRRVYSVEPNTIVQTIFARNYLSYLVPALMKIKENNISSKENIKNVKYEVDMAM 62

Query: 62  VSSAQGFAWSNSLKLKLQNQREDIGVSVNGNTSIPQSPSSESQAKILVSKSKNNDMPTMK 121
           VSSAQGFAWS+ LKLKLQ +     V+ N   SI ++ +SE + K               
Sbjct: 63  VSSAQGFAWSDGLKLKLQKECNVNDVATNS-RSIIENEASEDEEK--------------- 106

Query: 122 RDLXXXXXXXXXXNGQLKSLKRLIPGGENMCNDEMVVELESYIGCLQMQVN 172
                           +K+L RLIPGGE++C++++V ELESYI CLQMQ N
Sbjct: 107 ----------------MKNLIRLIPGGEDICDEQVVNELESYIRCLQMQEN 141


>Medtr2g083470.1 | transcription factor/transcription regulator,
          putative | LC | chr2:35032963-35032414 | 20130731
          Length = 123

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 20 VEAAFARNYMNYLVPALMKIKEINTCGG-----DIQNVVKHEVDMAMVSSAQGFAWSNSL 74
          ++  FARNY++YL   L KIKE N          I+NV K+EVD+AMV SAQ FAW N L
Sbjct: 6  MQTIFARNYLSYLDLTLTKIKENNNSSKDNNSNHIKNV-KYEVDIAMVFSAQDFAWGNIL 64

Query: 75 KLKLQNQREDI 85
          KLKLQ +  D+
Sbjct: 65 KLKLQKECHDV 75