Miyakogusa Predicted Gene

Lj6g3v1357540.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1357540.1 Non Characterized Hit- tr|A5C344|A5C344_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.61,3e-19,seg,NULL,CUFF.59387.1
         (199 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g036890.1 | U3 small nucleolar RNA-associated-like protein...   204   3e-53
Medtr2g036890.3 | U3 small nucleolar RNA-associated-like protein...   204   4e-53
Medtr2g036890.2 | U3 small nucleolar RNA-associated-like protein...   204   5e-53
Medtr2g036890.4 | U3 small nucleolar RNA-associated-like protein...   204   5e-53
Medtr2g012650.4 | U3 small nucleolar RNA-associated-like protein...   196   1e-50
Medtr2g012650.6 | U3 small nucleolar RNA-associated-like protein...   196   1e-50
Medtr2g012650.3 | U3 small nucleolar RNA-associated-like protein...   196   1e-50
Medtr2g012650.5 | U3 small nucleolar RNA-associated-like protein...   196   1e-50
Medtr2g012650.2 | U3 small nucleolar RNA-associated-like protein...   196   1e-50
Medtr2g012650.1 | U3 small nucleolar RNA-associated-like protein...   196   1e-50
Medtr4g415340.1 | U3 small nucleolar RNA-associated-like protein...   151   4e-37

>Medtr2g036890.1 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:15977145-15993470 | 20130731
          Length = 746

 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 132/168 (78%), Gaps = 4/168 (2%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N ++ +S ++L+D HD GEG D +SPRSN+V ++QQ+ D+++SGLIEGSETE+  EFS  
Sbjct: 103 NVEIIKSVNLLEDDHD-GEGSDIDSPRSNVVGSLQQNYDDNDSGLIEGSETEEDNEFSHS 161

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           DEEDI  NG  TSEDSV LSSF LHL H LSKEEIDSQKN K+SW++P IG++NCKW GT
Sbjct: 162 DEEDIRTNGGATSEDSVDLSSFDLHLQHNLSKEEIDSQKNLKFSWDVPVIGVSNCKWRGT 221

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G+N LKD N NS  GLK +LYEHWMD++KTSG   ++  KQKM FSLC
Sbjct: 222 GENILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLC 269


>Medtr2g036890.3 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:15977539-15993470 | 20130731
          Length = 682

 Score =  204 bits (520), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 132/168 (78%), Gaps = 4/168 (2%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N ++ +S ++L+D HD GEG D +SPRSN+V ++QQ+ D+++SGLIEGSETE+  EFS  
Sbjct: 39  NVEIIKSVNLLEDDHD-GEGSDIDSPRSNVVGSLQQNYDDNDSGLIEGSETEEDNEFSHS 97

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           DEEDI  NG  TSEDSV LSSF LHL H LSKEEIDSQKN K+SW++P IG++NCKW GT
Sbjct: 98  DEEDIRTNGGATSEDSVDLSSFDLHLQHNLSKEEIDSQKNLKFSWDVPVIGVSNCKWRGT 157

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G+N LKD N NS  GLK +LYEHWMD++KTSG   ++  KQKM FSLC
Sbjct: 158 GENILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLC 205


>Medtr2g036890.2 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:15977539-15993470 | 20130731
          Length = 630

 Score =  204 bits (518), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 132/168 (78%), Gaps = 4/168 (2%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N ++ +S ++L+D HD GEG D +SPRSN+V ++QQ+ D+++SGLIEGSETE+  EFS  
Sbjct: 39  NVEIIKSVNLLEDDHD-GEGSDIDSPRSNVVGSLQQNYDDNDSGLIEGSETEEDNEFSHS 97

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           DEEDI  NG  TSEDSV LSSF LHL H LSKEEIDSQKN K+SW++P IG++NCKW GT
Sbjct: 98  DEEDIRTNGGATSEDSVDLSSFDLHLQHNLSKEEIDSQKNLKFSWDVPVIGVSNCKWRGT 157

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G+N LKD N NS  GLK +LYEHWMD++KTSG   ++  KQKM FSLC
Sbjct: 158 GENILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLC 205


>Medtr2g036890.4 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:15977539-15993470 | 20130731
          Length = 630

 Score =  204 bits (518), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 132/168 (78%), Gaps = 4/168 (2%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N ++ +S ++L+D HD GEG D +SPRSN+V ++QQ+ D+++SGLIEGSETE+  EFS  
Sbjct: 39  NVEIIKSVNLLEDDHD-GEGSDIDSPRSNVVGSLQQNYDDNDSGLIEGSETEEDNEFSHS 97

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           DEEDI  NG  TSEDSV LSSF LHL H LSKEEIDSQKN K+SW++P IG++NCKW GT
Sbjct: 98  DEEDIRTNGGATSEDSVDLSSFDLHLQHNLSKEEIDSQKNLKFSWDVPVIGVSNCKWRGT 157

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G+N LKD N NS  GLK +LYEHWMD++KTSG   ++  KQKM FSLC
Sbjct: 158 GENILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLC 205


>Medtr2g012650.4 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:3227908-3208222 | 20130731
          Length = 656

 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 128/168 (76%), Gaps = 4/168 (2%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N D+ +S ++L+D HD GEG D +SP SN+  ++QQ+ D+++SGLIEGSETE+  EFS  
Sbjct: 39  NVDIIKSLNLLEDDHD-GEGSDIDSPISNVAGSLQQNSDDNDSGLIEGSETEEDNEFSHS 97

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           D+EDI  NG  TSEDSV LSSF LHL H LSKEEID+QKN K+SW++P IG++NC W GT
Sbjct: 98  DQEDIRTNGGATSEDSVDLSSFDLHLQHNLSKEEIDNQKNLKFSWDVPVIGVSNCTWRGT 157

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G N LKD N NS  GLK +LYEHWMD++KTSG   ++  KQKM FSLC
Sbjct: 158 GQNILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLC 205


>Medtr2g012650.6 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:3227908-3208024 | 20130731
          Length = 681

 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 128/168 (76%), Gaps = 4/168 (2%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N D+ +S ++L+D HD GEG D +SP SN+  ++QQ+ D+++SGLIEGSETE+  EFS  
Sbjct: 39  NVDIIKSLNLLEDDHD-GEGSDIDSPISNVAGSLQQNSDDNDSGLIEGSETEEDNEFSHS 97

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           D+EDI  NG  TSEDSV LSSF LHL H LSKEEID+QKN K+SW++P IG++NC W GT
Sbjct: 98  DQEDIRTNGGATSEDSVDLSSFDLHLQHNLSKEEIDNQKNLKFSWDVPVIGVSNCTWRGT 157

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G N LKD N NS  GLK +LYEHWMD++KTSG   ++  KQKM FSLC
Sbjct: 158 GQNILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLC 205


>Medtr2g012650.3 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:3227908-3208024 | 20130731
          Length = 681

 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 128/168 (76%), Gaps = 4/168 (2%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N D+ +S ++L+D HD GEG D +SP SN+  ++QQ+ D+++SGLIEGSETE+  EFS  
Sbjct: 39  NVDIIKSLNLLEDDHD-GEGSDIDSPISNVAGSLQQNSDDNDSGLIEGSETEEDNEFSHS 97

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           D+EDI  NG  TSEDSV LSSF LHL H LSKEEID+QKN K+SW++P IG++NC W GT
Sbjct: 98  DQEDIRTNGGATSEDSVDLSSFDLHLQHNLSKEEIDNQKNLKFSWDVPVIGVSNCTWRGT 157

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G N LKD N NS  GLK +LYEHWMD++KTSG   ++  KQKM FSLC
Sbjct: 158 GQNILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLC 205


>Medtr2g012650.5 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:3227908-3209222 | 20130731
          Length = 633

 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 128/168 (76%), Gaps = 4/168 (2%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N D+ +S ++L+D HD GEG D +SP SN+  ++QQ+ D+++SGLIEGSETE+  EFS  
Sbjct: 39  NVDIIKSLNLLEDDHD-GEGSDIDSPISNVAGSLQQNSDDNDSGLIEGSETEEDNEFSHS 97

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           D+EDI  NG  TSEDSV LSSF LHL H LSKEEID+QKN K+SW++P IG++NC W GT
Sbjct: 98  DQEDIRTNGGATSEDSVDLSSFDLHLQHNLSKEEIDNQKNLKFSWDVPVIGVSNCTWRGT 157

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G N LKD N NS  GLK +LYEHWMD++KTSG   ++  KQKM FSLC
Sbjct: 158 GQNILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLC 205


>Medtr2g012650.2 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:3229569-3209444 | 20130731
          Length = 706

 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 128/168 (76%), Gaps = 4/168 (2%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N D+ +S ++L+D HD GEG D +SP SN+  ++QQ+ D+++SGLIEGSETE+  EFS  
Sbjct: 128 NVDIIKSLNLLEDDHD-GEGSDIDSPISNVAGSLQQNSDDNDSGLIEGSETEEDNEFSHS 186

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           D+EDI  NG  TSEDSV LSSF LHL H LSKEEID+QKN K+SW++P IG++NC W GT
Sbjct: 187 DQEDIRTNGGATSEDSVDLSSFDLHLQHNLSKEEIDNQKNLKFSWDVPVIGVSNCTWRGT 246

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G N LKD N NS  GLK +LYEHWMD++KTSG   ++  KQKM FSLC
Sbjct: 247 GQNILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLC 294


>Medtr2g012650.1 | U3 small nucleolar RNA-associated-like protein |
           HC | chr2:3229569-3208024 | 20130731
          Length = 769

 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 128/168 (76%), Gaps = 4/168 (2%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N D+ +S ++L+D HD GEG D +SP SN+  ++QQ+ D+++SGLIEGSETE+  EFS  
Sbjct: 127 NVDIIKSLNLLEDDHD-GEGSDIDSPISNVAGSLQQNSDDNDSGLIEGSETEEDNEFSHS 185

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           D+EDI  NG  TSEDSV LSSF LHL H LSKEEID+QKN K+SW++P IG++NC W GT
Sbjct: 186 DQEDIRTNGGATSEDSVDLSSFDLHLQHNLSKEEIDNQKNLKFSWDVPVIGVSNCTWRGT 245

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G N LKD N NS  GLK +LYEHWMD++KTSG   ++  KQKM FSLC
Sbjct: 246 GQNILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKQKMFFSLC 293


>Medtr4g415340.1 | U3 small nucleolar RNA-associated-like protein |
           HC | chr4:4500456-4504966 | 20130731
          Length = 283

 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 111/168 (66%), Gaps = 21/168 (12%)

Query: 34  NDDVPESRSMLKDVHDDGEGFDDESPRSNLVETVQQDPDNSNSGLIEGSETEDGVEFSDL 93
           N ++ +S ++L+D HD GEG   +SP SN+V ++QQ+ D+++SGLIE  ETE+  EFS  
Sbjct: 39  NVEIIKSVNLLEDDHD-GEGSGIDSPISNVVGSLQQNSDDNDSGLIEVFETEEDNEFSHS 97

Query: 94  DEEDIEINGPLTSEDSVQLSSFYLHLHHILSKEEIDSQKNWKYSWEIPAIGMTNCKWTGT 153
           D+EDI   G  TSEDSV LS                 QKN K+SW++P IG +NCKW GT
Sbjct: 98  DKEDIRTIGGATSEDSVDLS-----------------QKNLKFSWDVPVIGASNCKWRGT 140

Query: 154 GDNFLKDMNTNSYDGLKARLYEHWMDINKTSG---VDLSKQKMLFSLC 198
           G+N LKD N NS  GLK +LYEHWMD++KTSG   ++  K KM FSLC
Sbjct: 141 GENILKDFNINSCPGLKEKLYEHWMDVSKTSGGKDINSPKHKMFFSLC 188