Miyakogusa Predicted Gene

Lj6g3v1334380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1334380.1 tr|Q5Z846|Q5Z846_ORYSJ Os06g0700300 protein
OS=Oryza sativa subsp. japonica GN=P0468G03.21 PE=2
SV=1,42.86,0.000000000000006,DUF4228,Protein of unknown function
DUF4228; seg,NULL,CUFF.59373.1
         (190 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g037760.1 | DUF4228 domain protein | HC | chr2:16352896-16...   215   2e-56
Medtr4g127530.1 | DUF4228 domain protein | HC | chr4:52947037-52...   189   2e-48
Medtr5g074290.1 | DUF4228 domain protein | HC | chr5:31537856-31...    50   2e-06

>Medtr2g037760.1 | DUF4228 domain protein | HC |
           chr2:16352896-16353450 | 20130731
          Length = 184

 Score =  215 bits (548), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/189 (69%), Positives = 149/189 (78%), Gaps = 8/189 (4%)

Query: 1   MGGCFSCRXXXXXXXXXXVRLVHLSGYVEDFEQPISVSQVTGNSGNPTSHFVCTSVQLLS 60
           MGGCFS R          +RLVHLSGYVEDFEQPISV+QV  NS NP +HFVCTS+QLLS
Sbjct: 1   MGGCFSSRSSCTSKK---IRLVHLSGYVEDFEQPISVNQVI-NSRNPPTHFVCTSLQLLS 56

Query: 61  SCSKSLKGDTQLQPGNVYFMLPYSILQPDVSPVDLASLAKRLTSIAKTRRRSCDEDKKSL 120
           S SK LKGDTQLQPGNVYFMLPYSILQ DVSPVDLASLAKRLT+ AKT R    ++KKSL
Sbjct: 57  SSSKPLKGDTQLQPGNVYFMLPYSILQADVSPVDLASLAKRLTAKAKTSRF---DEKKSL 113

Query: 121 K-ASPLASQIGLSNVWSSPSRSPGRVGVAEEIGLAYGGRSVSGVRPWKPILGTIREKSLN 179
           K +SPL++Q  LS++WSSPS SPGRV VAE+ G+ YGGRS    R W+P+L TIREKS N
Sbjct: 114 KGSSPLSNQDALSSIWSSPSMSPGRVAVAEQYGMTYGGRSTCRGRLWRPLLDTIREKSFN 173

Query: 180 RRSESDLLE 188
           R +ESDL E
Sbjct: 174 RSNESDLKE 182


>Medtr4g127530.1 | DUF4228 domain protein | HC |
           chr4:52947037-52946274 | 20130731
          Length = 185

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 130/190 (68%), Gaps = 12/190 (6%)

Query: 1   MGGCFSCRXXXXXXXXXXVRLVHLSGYVEDFEQPISVSQVTGNSGNPTSHFVCTSVQLLS 60
           MG C+SC           +R++HL+G+VEDF+QPIS SQV GN   P ++FVCTS+QLLS
Sbjct: 1   MGACYSCNTSSILKNN--IRVIHLNGFVEDFDQPISASQVIGN---PPNYFVCTSIQLLS 55

Query: 61  SCSKSLKGDTQLQPGNVYFMLPYSILQPDVSPVDLASLAKRLTSIAKTRRRSCDEDKKSL 120
           S    LKGD+QLQPG +YFMLPYSIL+   SPVDLA LAKRLT+ +KT ++ CD  KK  
Sbjct: 56  SSYNPLKGDSQLQPGQLYFMLPYSILEDGFSPVDLACLAKRLTAKSKT-KQPCDY-KKFP 113

Query: 121 KASPLASQIGLSNVWSSPSRSPGRVGVAEEIGLAY--GGRSVSGVRPWKPILGTIREKSL 178
            A P  +Q   +  WSS SRSP RVG  E+IG+    GGRS   ++ WKPIL TI EK  
Sbjct: 114 TAIPSLNQ---TIPWSSSSRSPCRVGAQEKIGMNMMSGGRSPCRMQSWKPILDTITEKPF 170

Query: 179 NRRSESDLLE 188
           NRRSESDL E
Sbjct: 171 NRRSESDLQE 180


>Medtr5g074290.1 | DUF4228 domain protein | HC |
           chr5:31537856-31538895 | 20130731
          Length = 160

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 17/111 (15%)

Query: 19  VRLVHLSGYVEDFEQPISVSQVTGNSGN-----PTSHFVCTSVQLLSSCSKSLKGDTQLQ 73
           +R+VHL+GYVE+  +PIS  +V   + N     P+S  V   + +LS        +T+L+
Sbjct: 21  IRIVHLNGYVEEITRPISAGEVLKANPNHVLSKPSSEGVVRRILILSP-------ETELK 73

Query: 74  PGNVYFMLPYSILQPDVSPVDLASLAKRLTSI-----AKTRRRSCDEDKKS 119
            G++YF++P + L      V  +   K L +      ++ + ++CD+D KS
Sbjct: 74  RGSIYFLIPSTSLPEKKRRVRRSVAEKNLENKKVYFSSEEKSKNCDDDNKS 124