Miyakogusa Predicted Gene

Lj6g3v1333190.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1333190.3 Non Characterized Hit- tr|J3N9K8|J3N9K8_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB11G2,34.71,4e-19,DNA
BINDING / DNA-DIRECTED RNA POLYMERASE,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; RNA_pol_I_A49,RNA p,CUFF.59368.3
         (163 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g104810.1 | A49-like RNA polymerase I associated factor | ...   165   1e-41
Medtr2g037880.2 | A49-like RNA polymerase I associated factor | ...   162   1e-40
Medtr2g037880.1 | A49-like RNA polymerase I associated factor | ...   162   1e-40
Medtr2g037460.1 | A49-like RNA polymerase I associated factor | ...   162   1e-40
Medtr2g037460.2 | A49-like RNA polymerase I associated factor | ...   162   1e-40

>Medtr7g104810.1 | A49-like RNA polymerase I associated factor | HC
           | chr7:42499316-42491679 | 20130731
          Length = 429

 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/154 (53%), Positives = 108/154 (70%), Gaps = 2/154 (1%)

Query: 2   LQLGEEADFSAYPTFICNRIARLKQIKDESEKKKISCIYSYINHLIKFKDQHTLDGVSSA 61
           LQ  E A+FS YP+FI NRI RLK+I+D+SEKKK+SCI  +IN+L+KFKDQH++DG+SS+
Sbjct: 263 LQKEEAANFSLYPSFIRNRINRLKKIEDDSEKKKLSCILLFINYLVKFKDQHSMDGISSS 322

Query: 62  KSHKIPPILRHKFSSMFGVFEXXXXXXXXXXXXICYVLVLTLFCDEFQTDYTDISKDLRK 121
           K  K+P  L H+F++MF V E            I YVLVLTLF D+F+TDY DI+KDLR 
Sbjct: 323 KFEKLPYTLHHRFTAMFDVSESRRLPPEKLNLLISYVLVLTLFSDDFRTDYRDIAKDLRM 382

Query: 122 GESLVRDCYNKLGCKIPPQKKI--CTLPVPLKFP 153
               +R  +  LGCK+   +K+   TLP+PL FP
Sbjct: 383 TTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFP 416


>Medtr2g037880.2 | A49-like RNA polymerase I associated factor | HC
           | chr2:16421746-16415865 | 20130731
          Length = 428

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 106/153 (69%), Gaps = 2/153 (1%)

Query: 2   LQLGEEADFSAYPTFICNRIARLKQIKDESEKKKISCIYSYINHLIKFKDQHTLDGVSSA 61
           LQ    ADFS YP+FI NRI RLK+I+D+SEKKK SCI S+IN+L+KFKDQH++DG+SS+
Sbjct: 262 LQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKHSCILSFINYLVKFKDQHSMDGISSS 321

Query: 62  KSHKIPPILRHKFSSMFGVFEXXXXXXXXXXXXICYVLVLTLFCDEFQTDYTDISKDLRK 121
           K  K+P  L H+F++MF V E            I YVLVLTLF D+F+TDY DI+KDLR 
Sbjct: 322 KFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIAKDLRM 381

Query: 122 GESLVRDCYNKLGCKIPPQKKI--CTLPVPLKF 152
               +R  +  LGCK+   +K+   TLP+PL F
Sbjct: 382 TTLTLRPIFEHLGCKLISSQKVSYATLPIPLTF 414


>Medtr2g037880.1 | A49-like RNA polymerase I associated factor | HC
           | chr2:16421746-16415865 | 20130731
          Length = 428

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 106/153 (69%), Gaps = 2/153 (1%)

Query: 2   LQLGEEADFSAYPTFICNRIARLKQIKDESEKKKISCIYSYINHLIKFKDQHTLDGVSSA 61
           LQ    ADFS YP+FI NRI RLK+I+D+SEKKK SCI S+IN+L+KFKDQH++DG+SS+
Sbjct: 262 LQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKHSCILSFINYLVKFKDQHSMDGISSS 321

Query: 62  KSHKIPPILRHKFSSMFGVFEXXXXXXXXXXXXICYVLVLTLFCDEFQTDYTDISKDLRK 121
           K  K+P  L H+F++MF V E            I YVLVLTLF D+F+TDY DI+KDLR 
Sbjct: 322 KFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIAKDLRM 381

Query: 122 GESLVRDCYNKLGCKIPPQKKI--CTLPVPLKF 152
               +R  +  LGCK+   +K+   TLP+PL F
Sbjct: 382 TTLTLRPIFEHLGCKLISSQKVSYATLPIPLTF 414


>Medtr2g037460.1 | A49-like RNA polymerase I associated factor | LC
           | chr2:16244137-16250892 | 20130731
          Length = 419

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 105/153 (68%), Gaps = 2/153 (1%)

Query: 2   LQLGEEADFSAYPTFICNRIARLKQIKDESEKKKISCIYSYINHLIKFKDQHTLDGVSSA 61
           LQ    ADFS YP+FI NRI RLK+I+D+SEKKK+SCI S+IN+L+KFKDQH++DG+SS+
Sbjct: 253 LQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGISSS 312

Query: 62  KSHKIPPILRHKFSSMFGVFEXXXXXXXXXXXXICYVLVLTLFCDEFQTDYTDISKDLRK 121
           K  K+P  L H+F++MF V E            I YVLVLTLF D+F+TDY DI KDLR 
Sbjct: 313 KFEKLPYTLYHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIVKDLRM 372

Query: 122 GESLVRDCYNKLGCKIPPQKKI--CTLPVPLKF 152
               +R  +  LGCK    +K+   TLP+PL F
Sbjct: 373 STLTLRPIFEHLGCKFISSQKVSYATLPIPLTF 405


>Medtr2g037460.2 | A49-like RNA polymerase I associated factor | LC
           | chr2:16244083-16251203 | 20130731
          Length = 332

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 105/153 (68%), Gaps = 2/153 (1%)

Query: 2   LQLGEEADFSAYPTFICNRIARLKQIKDESEKKKISCIYSYINHLIKFKDQHTLDGVSSA 61
           LQ    ADFS YP+FI NRI RLK+I+D+SEKKK+SCI S+IN+L+KFKDQH++DG+SS+
Sbjct: 166 LQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGISSS 225

Query: 62  KSHKIPPILRHKFSSMFGVFEXXXXXXXXXXXXICYVLVLTLFCDEFQTDYTDISKDLRK 121
           K  K+P  L H+F++MF V E            I YVLVLTLF D+F+TDY DI KDLR 
Sbjct: 226 KFEKLPYTLYHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIVKDLRM 285

Query: 122 GESLVRDCYNKLGCKIPPQKKI--CTLPVPLKF 152
               +R  +  LGCK    +K+   TLP+PL F
Sbjct: 286 STLTLRPIFEHLGCKFISSQKVSYATLPIPLTF 318