Miyakogusa Predicted Gene

Lj6g3v1333110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1333110.1 Non Characterized Hit- tr|B8LLC4|B8LLC4_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,39.26,3e-16,seg,NULL,CUFF.59355.1
         (181 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g037940.2 | transmembrane protein, putative | HC | chr2:16...   143   1e-34
Medtr2g037940.1 | transmembrane protein, putative | HC | chr2:16...   143   1e-34

>Medtr2g037940.2 | transmembrane protein, putative | HC |
           chr2:16462457-16458440 | 20130731
          Length = 294

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 86/138 (62%), Gaps = 4/138 (2%)

Query: 30  FYNSPQIPGGYYQMFPAGIYPALVPGLAPPQIDEHVNRGAGIYAVPVNPYDRNVTGFPYN 89
           F N P  P GYYQMFP G++PAL+PGL PPQ +EH NRGAG+YAVPVNP+DR+VTG PYN
Sbjct: 35  FSNLPAYPAGYYQMFP-GMHPALIPGLTPPQTEEHANRGAGLYAVPVNPFDRHVTGLPYN 93

Query: 90  TLIPLTYRTPTRRXXXXXXXXXNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLLLM 149
           TLIPLTYRTPTR                                          IDLLLM
Sbjct: 94  TLIPLTYRTPTR---PSSEAAAGENQGQAAQQQHPQQPAPQRQVVVRRFQIAFQIDLLLM 150

Query: 150 LKLAAVIFLFNQDGSRQR 167
           LKLAAVIFLFNQDGSRQR
Sbjct: 151 LKLAAVIFLFNQDGSRQR 168


>Medtr2g037940.1 | transmembrane protein, putative | HC |
           chr2:16462519-16458337 | 20130731
          Length = 296

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 86/138 (62%), Gaps = 4/138 (2%)

Query: 30  FYNSPQIPGGYYQMFPAGIYPALVPGLAPPQIDEHVNRGAGIYAVPVNPYDRNVTGFPYN 89
           F N P  P GYYQMFP G++PAL+PGL PPQ +EH NRGAG+YAVPVNP+DR+VTG PYN
Sbjct: 37  FSNLPAYPAGYYQMFP-GMHPALIPGLTPPQTEEHANRGAGLYAVPVNPFDRHVTGLPYN 95

Query: 90  TLIPLTYRTPTRRXXXXXXXXXNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLLLM 149
           TLIPLTYRTPTR                                          IDLLLM
Sbjct: 96  TLIPLTYRTPTR---PSSEAAAGENQGQAAQQQHPQQPAPQRQVVVRRFQIAFQIDLLLM 152

Query: 150 LKLAAVIFLFNQDGSRQR 167
           LKLAAVIFLFNQDGSRQR
Sbjct: 153 LKLAAVIFLFNQDGSRQR 170