Miyakogusa Predicted Gene

Lj6g3v1333090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1333090.1 tr|Q6EUQ6|Q6EUQ6_ORYSJ Os02g0175700 protein
OS=Oryza sativa subsp. japonica GN=OJ1077_E05.14 PE=2
SV,58.51,2e-18,CLATHRIN ASSEMBLY PROTEIN,NULL,CUFF.59353.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g127440.1 | clathrin assembly plant-like protein | HC | ch...   172   5e-44
Medtr2g037980.1 | clathrin assembly plant-like protein | HC | ch...   163   4e-41
Medtr4g115420.1 | clathrin assembly plant-like protein, putative...    61   2e-10
Medtr4g114960.1 | clathrin assembly plant-like protein, putative...    55   1e-08
Medtr8g008860.1 | clathrin assembly plant-like protein | HC | ch...    55   2e-08

>Medtr4g127440.1 | clathrin assembly plant-like protein | HC |
           chr4:52898132-52902112 | 20130731
          Length = 579

 Score =  172 bits (437), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 82/115 (71%), Positives = 99/115 (86%), Gaps = 1/115 (0%)

Query: 1   MALAILPPDGHNPNNLALSSIGGTTGWELALVTAPSNHTNQAPDRKMAGGFDKLLLDSLY 60
           +ALAI+PPDG+N NNLAL++I GTTGWELALVT PSNHT QA D+ MAGGFDKLLL+SLY
Sbjct: 398 LALAIIPPDGNNSNNLALTNITGTTGWELALVTTPSNHTCQASDQNMAGGFDKLLLNSLY 457

Query: 61  EDDNARRQHQLQMAGYGHGGVPVENPFDHYNQQHDPFAMSSNIAPPTNVQLALLA 115
           ED+NARRQ QLQ AGYG+GG    NPF+ YN QHDPFA+S+N+A P+NVQ+ L++
Sbjct: 458 EDENARRQLQLQNAGYGYGGAATHNPFNSYN-QHDPFAVSNNVALPSNVQIELMS 511


>Medtr2g037980.1 | clathrin assembly plant-like protein | HC |
           chr2:16484005-16479782 | 20130731
          Length = 592

 Score =  163 bits (412), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 94/110 (85%), Gaps = 2/110 (1%)

Query: 1   MALAILPPDGHNPNNLALSS-IGGTTGWELALVTAPSNHTNQAPDRKMAGGFDKLLLDSL 59
           +ALAI+PP G+N +N    S IGGTTGWELALVT PSNHT+QAPDR MAGGFDKLLLDSL
Sbjct: 404 LALAIVPPGGNNNSNNLALSNIGGTTGWELALVTTPSNHTSQAPDRAMAGGFDKLLLDSL 463

Query: 60  YEDDNARRQHQLQMAGYGHGGVPVENPFDHYNQQHDPFAMSSNIAPPTNV 109
           YED++ARRQ QLQ AGYGH  + V+NPFDHYN QHDPFAMS NIAPPTNV
Sbjct: 464 YEDEHARRQLQLQNAGYGHEEMTVQNPFDHYN-QHDPFAMSQNIAPPTNV 512


>Medtr4g115420.1 | clathrin assembly plant-like protein, putative |
           HC | chr4:47678478-47672469 | 20130731
          Length = 545

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 20/122 (16%)

Query: 1   MALAILPPDGHNPNNLALSSIGGTTGWELALVTAPSNHTNQAPDRKMAGGFDKLLLDSLY 60
           +ALAI+P D   P+ ++ +   GT GWELALVTAPS++ + A   K+AGG D L LDSLY
Sbjct: 381 LALAIVPAD-QQPSAVS-NHANGTAGWELALVTAPSSNESAAAASKLAGGLDMLTLDSLY 438

Query: 61  EDDNARRQHQLQMAGYGHGGVPVENPFDH-------YNQQHDPFAMSSNIAPPTNVQLAL 113
            DD  RR +  Q A Y        NP++            HDPF  S+ +A P +VQ+A 
Sbjct: 439 -DDALRRNN--QNASY--------NPWEQAPAGGMMQPTMHDPFFASNTMAAPHSVQMAA 487

Query: 114 LA 115
           ++
Sbjct: 488 MS 489


>Medtr4g114960.1 | clathrin assembly plant-like protein, putative |
           HC | chr4:47396184-47393729 | 20130731
          Length = 601

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 20/107 (18%)

Query: 23  GTTGWELALVTAPSNHTNQAPDRKMAGGFDKLLLDSLYEDDNARRQH------------Q 70
           G   WELALV   SN + Q  D  + GGFD L+L+ +Y D  A RQH             
Sbjct: 436 GKADWELALVETSSNLSKQKAD--LGGGFDSLILNGMY-DQGAVRQHVSTTEVSGGSASS 492

Query: 71  LQMAGYGHGGVPV-ENPFDHYNQQ----HDPFAMSSNIAPPTNVQLA 112
           + + G G   +P+   P      Q     DPFA S ++ PP+ VQ+A
Sbjct: 493 VALPGVGKSAIPILALPAPDGTMQAVGTQDPFAASLSVPPPSYVQIA 539


>Medtr8g008860.1 | clathrin assembly plant-like protein | HC |
           chr8:1923626-1926030 | 20130731
          Length = 588

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 18/99 (18%)

Query: 25  TGWELALVTAPSNHTNQAPDRKMAGGFDKLLLDSLYEDDNARRQHQLQ-MAGYGHGG--- 80
           + WE  LV + +N  NQ P   + GGFD LLLDS+Y      ++  LQ M GYG      
Sbjct: 442 SDWETTLVQSSTNLPNQKP--SLGGGFDTLLLDSMYN-----QKPSLQGMNGYGSASSVA 494

Query: 81  -------VPVENPFDHYNQQHDPFAMSSNIAPPTNVQLA 112
                  + +  P    N   DPFA S  +APP  VQ++
Sbjct: 495 IRSEATMLALPAPPTSRNGSQDPFAASMLVAPPAYVQMS 533