Miyakogusa Predicted Gene
- Lj6g3v1333010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1333010.1 Non Characterized Hit- tr|K3WGX2|K3WGX2_PYTUL
Uncharacterized protein OS=Pythium ultimum
GN=PYU1_G00,26.99,3e-17,PHD,Zinc finger, PHD-finger;
Homeobox,Homeodomain; ZF_PHD_1,Zinc finger, PHD-type, conserved site;
c,CUFF.59393.1
(716 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g038000.1 | pathogenesis-related homeodomain-like protein,... 796 0.0
Medtr1g107015.3 | homeobox KN domain protein | HC | chr1:4844764... 205 1e-52
Medtr1g107015.4 | homeobox KN domain protein | HC | chr1:4844764... 205 1e-52
Medtr1g107015.2 | homeobox KN domain protein | HC | chr1:4844771... 205 2e-52
Medtr1g107015.1 | homeobox KN domain protein | HC | chr1:4844666... 204 2e-52
Medtr3g088665.1 | PHD-finger protein | LC | chr3:40402136-404074... 52 2e-06
>Medtr2g038000.1 | pathogenesis-related homeodomain-like protein,
putative | HC | chr2:16499640-16505838 | 20130731
Length = 707
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/718 (60%), Positives = 506/718 (70%), Gaps = 15/718 (2%)
Query: 1 MQGTEKLNGTGSTKSSNSEEHAESKVDSLRYRTNITXXXXXXXXXXXXXXXXXXXXXASG 60
M+ TE+LN GSTK SN++EH + KVDS +++T+ T AS
Sbjct: 1 MRDTERLNNQGSTKPSNTKEHIKLKVDSPQFKTSSTKHQRKKHRLKSKSHKLGGCTNASV 60
Query: 61 RTVTNSSIKRQVKDSSNKKIIRQSLHKTDGKSSRMLSSTMIQGGKSSLGSRKEG-KDV-D 118
RT T+SS K KDSSNK TD S+++ S IQGGK+SL + ++G KDV D
Sbjct: 61 RTATDSSNKASTKDSSNK---------TDRNSTQVQPSKKIQGGKTSLNNDRKGEKDVVD 111
Query: 119 GEVMVQKVXXXXXXXXXXXXXXXXXXXXXXXXXXYLLIKMKLEQNLIDAYSGEGWKGQSR 178
E +QK +LI+MK EQNLIDAY+GEGWKGQSR
Sbjct: 112 QEGNIQKRKRRRKKKRQRHNVDLDDTVRLQRRTRNILIRMKQEQNLIDAYAGEGWKGQSR 171
Query: 179 EKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLSSLGSIEDSVIDPDGSVYHEHIFCANC 238
EKIRPE ELQRAKKQIL CKLSIRDAI QLDSLSS+GSIE SVI DGSV HEHIFCANC
Sbjct: 172 EKIRPEMELQRAKKQILKCKLSIRDAIHQLDSLSSVGSIEGSVIATDGSVSHEHIFCANC 231
Query: 239 KLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCNFCECKIEILEATNA 298
K+ E PDNDIILCDGTCNRAFHQRCL+PPL+TE+IPP DQGWFC +C+CKIEILEATNA
Sbjct: 232 KINEVSPDNDIILCDGTCNRAFHQRCLDPPLETEDIPPEDQGWFCKYCDCKIEILEATNA 291
Query: 299 HLGTQISLDSTWQDVFKEEAAIPDGDNALLNXXXXXXXXXXXXXXXXXXXXXXNH-SIKA 357
HLGT+ LDSTWQDVFKEEAAIPDGD ALLN +H
Sbjct: 292 HLGTRFPLDSTWQDVFKEEAAIPDGDAALLNQEEEWPSDDPEDDDYNPERKEESHGGFNT 351
Query: 358 EGTXXXXXXXXXXXXXXXXXXXECSPVDEGTGLEYYSVNCCIDSDDSGEIACGRRQRKSV 417
EG ECS +DEG LEYYS N IDSD+SGEIACGRRQR++V
Sbjct: 352 EGNDKNASDDSSSSSSMWSLNGECSLLDEGINLEYYS-NDHIDSDESGEIACGRRQRRAV 410
Query: 418 DYKKLYDEMFGKDAPPCELVSEDEDWGTGKRKRREKESDAVNTLMTMHXXXXXXXXXXXX 477
DYKKLYDEMFGKDAPPCE VSEDEDWG KR+RREKES+AVNTLMT+H
Sbjct: 411 DYKKLYDEMFGKDAPPCEQVSEDEDWGPRKRRRREKESEAVNTLMTLHESENKYPNNKNN 470
Query: 478 DGIREGSSGKPIRRSCFRIPHDALEKLRQVFAENELPPRSVKEGLSKELGIDAAKVSKWF 537
D IR SSG I+R CFR H+A+EKLRQVFAENELPP+SVK+ LSKELG+DAAKV+KWF
Sbjct: 471 DRIRGNSSG--IKRPCFRFSHEAVEKLRQVFAENELPPKSVKDALSKELGLDAAKVNKWF 528
Query: 538 KNARYFALKARKYQAGGEQLQSFTSKTPKDSRSQNVDKDELLKSMASKITVTQYQKNGKN 597
KNARY ALK RK Q GG+QLQS TSKT KDS SQ+V +DE+L ++KITV K +N
Sbjct: 529 KNARYMALKIRKLQEGGQQLQSITSKTSKDSTSQHVQEDEVLNPKSAKITVISSLKKCEN 588
Query: 598 VTGREKIKSCSSPLKKRRLQIPPPLRENGNKGSMEVNDDVSLKKLLKEKKTRVNFISEGD 657
VTG+EK K+ S+PLKK+R +IPP L ENGNK SMEV+DDVSL KLL+++K +V+F EGD
Sbjct: 589 VTGKEKTKASSNPLKKKRPEIPPCLGENGNKDSMEVSDDVSLMKLLQDRKKKVSFAFEGD 648
Query: 658 SQAAELEFERISKLKAKLDSMKQKLTEVQNLRASGSDKLCSNEPSVIYVPIAELREKV 715
S+AAELEFER+SK+K K+D +KQ+LT VQN R+ GSD++ NEPS++YVPIAELREKV
Sbjct: 649 SEAAELEFERLSKVKTKIDRLKQRLTGVQNCRSKGSDEVHLNEPSIMYVPIAELREKV 706
>Medtr1g107015.3 | homeobox KN domain protein | HC |
chr1:48447642-48453047 | 20130731
Length = 851
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 118/167 (70%)
Query: 153 YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 212
Y L ++ EQNLIDAYSGEGWKG S EK++PEKE+QRAK +IL KL IRD + LDSL
Sbjct: 256 YYLNRISYEQNLIDAYSGEGWKGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLC 315
Query: 213 SLGSIEDSVIDPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTE 272
+ G + +S+ D +G + E IFCA C+ + +NDIILCDG C+R +HQ CL+PPL TE
Sbjct: 316 AEGRLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTE 375
Query: 273 NIPPGDQGWFCNFCECKIEILEATNAHLGTQISLDSTWQDVFKEEAA 319
+IPPGD+GW C C+CK + +E N LGT +SL +W+ VF E A
Sbjct: 376 DIPPGDEGWLCPGCDCKDDCIELVNDLLGTSLSLTDSWERVFPEAAT 422
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 410 GRRQRKSVDYKKLYDEMFGKDAPPCELVSEDEDWGTGKRKRREKESDAVNTLMTMHXXXX 469
G+R + +DY+KLY+E + D S+DEDW R+K+ A T + +
Sbjct: 583 GKRNVERLDYQKLYEETYHSD------TSDDEDWADTTTPSRKKKLTAKITPGSPNGNAS 636
Query: 470 XXXXXXXXDGIR---------------EG--SSGKPIRRSCFRIPHDALEKLRQVFAENE 512
EG SGK S ++ +++L + F EN+
Sbjct: 637 NNSRRTAKRNTHQHKVENTNNSPTKTLEGCTESGKKRGSSYCKLGEAVVQRLHKSFKENQ 696
Query: 513 LPPRSVKEGLSKELGIDAAKVSKWFKNARY 542
P R+ KE L++ELG+ +V KWF N+R+
Sbjct: 697 YPERTAKESLAQELGLTFQQVDKWFGNSRW 726
>Medtr1g107015.4 | homeobox KN domain protein | HC |
chr1:48447642-48453047 | 20130731
Length = 851
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 118/167 (70%)
Query: 153 YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 212
Y L ++ EQNLIDAYSGEGWKG S EK++PEKE+QRAK +IL KL IRD + LDSL
Sbjct: 256 YYLNRISYEQNLIDAYSGEGWKGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLC 315
Query: 213 SLGSIEDSVIDPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTE 272
+ G + +S+ D +G + E IFCA C+ + +NDIILCDG C+R +HQ CL+PPL TE
Sbjct: 316 AEGRLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTE 375
Query: 273 NIPPGDQGWFCNFCECKIEILEATNAHLGTQISLDSTWQDVFKEEAA 319
+IPPGD+GW C C+CK + +E N LGT +SL +W+ VF E A
Sbjct: 376 DIPPGDEGWLCPGCDCKDDCIELVNDLLGTSLSLTDSWERVFPEAAT 422
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 410 GRRQRKSVDYKKLYDEMFGKDAPPCELVSEDEDWGTGKRKRREKESDAVNTLMTMHXXXX 469
G+R + +DY+KLY+E + D S+DEDW R+K+ A T + +
Sbjct: 583 GKRNVERLDYQKLYEETYHSD------TSDDEDWADTTTPSRKKKLTAKITPGSPNGNAS 636
Query: 470 XXXXXXXXDGIR---------------EG--SSGKPIRRSCFRIPHDALEKLRQVFAENE 512
EG SGK S ++ +++L + F EN+
Sbjct: 637 NNSRRTAKRNTHQHKVENTNNSPTKTLEGCTESGKKRGSSYCKLGEAVVQRLHKSFKENQ 696
Query: 513 LPPRSVKEGLSKELGIDAAKVSKWFKNARY 542
P R+ KE L++ELG+ +V KWF N+R+
Sbjct: 697 YPERTAKESLAQELGLTFQQVDKWFGNSRW 726
>Medtr1g107015.2 | homeobox KN domain protein | HC |
chr1:48447717-48453047 | 20130731
Length = 826
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 118/167 (70%)
Query: 153 YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 212
Y L ++ EQNLIDAYSGEGWKG S EK++PEKE+QRAK +IL KL IRD + LDSL
Sbjct: 231 YYLNRISYEQNLIDAYSGEGWKGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLC 290
Query: 213 SLGSIEDSVIDPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTE 272
+ G + +S+ D +G + E IFCA C+ + +NDIILCDG C+R +HQ CL+PPL TE
Sbjct: 291 AEGRLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTE 350
Query: 273 NIPPGDQGWFCNFCECKIEILEATNAHLGTQISLDSTWQDVFKEEAA 319
+IPPGD+GW C C+CK + +E N LGT +SL +W+ VF E A
Sbjct: 351 DIPPGDEGWLCPGCDCKDDCIELVNDLLGTSLSLTDSWERVFPEAAT 397
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 410 GRRQRKSVDYKKLYDEMFGKDAPPCELVSEDEDWGTGKRKRREKESDAVNTLMTMHXXXX 469
G+R + +DY+KLY+E + D S+DEDW R+K+ A T + +
Sbjct: 558 GKRNVERLDYQKLYEETYHSD------TSDDEDWADTTTPSRKKKLTAKITPGSPNGNAS 611
Query: 470 XXXXXXXXDGIR---------------EG--SSGKPIRRSCFRIPHDALEKLRQVFAENE 512
EG SGK S ++ +++L + F EN+
Sbjct: 612 NNSRRTAKRNTHQHKVENTNNSPTKTLEGCTESGKKRGSSYCKLGEAVVQRLHKSFKENQ 671
Query: 513 LPPRSVKEGLSKELGIDAAKVSKWFKNARY 542
P R+ KE L++ELG+ +V KWF N+R+
Sbjct: 672 YPERTAKESLAQELGLTFQQVDKWFGNSRW 701
>Medtr1g107015.1 | homeobox KN domain protein | HC |
chr1:48446666-48453047 | 20130731
Length = 926
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 118/167 (70%)
Query: 153 YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 212
Y L ++ EQNLIDAYSGEGWKG S EK++PEKE+QRAK +IL KL IRD + LDSL
Sbjct: 331 YYLNRISYEQNLIDAYSGEGWKGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLC 390
Query: 213 SLGSIEDSVIDPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLNPPLDTE 272
+ G + +S+ D +G + E IFCA C+ + +NDIILCDG C+R +HQ CL+PPL TE
Sbjct: 391 AEGRLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTE 450
Query: 273 NIPPGDQGWFCNFCECKIEILEATNAHLGTQISLDSTWQDVFKEEAA 319
+IPPGD+GW C C+CK + +E N LGT +SL +W+ VF E A
Sbjct: 451 DIPPGDEGWLCPGCDCKDDCIELVNDLLGTSLSLTDSWERVFPEAAT 497
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 410 GRRQRKSVDYKKLYDEMFGKDAPPCELVSEDEDWGTGKRKRREKESDAVNTLMTMHXXXX 469
G+R + +DY+KLY+E + D S+DEDW R+K+ A T + +
Sbjct: 658 GKRNVERLDYQKLYEETYHSD------TSDDEDWADTTTPSRKKKLTAKITPGSPNGNAS 711
Query: 470 XXXXXXXXDGIR---------------EG--SSGKPIRRSCFRIPHDALEKLRQVFAENE 512
EG SGK S ++ +++L + F EN+
Sbjct: 712 NNSRRTAKRNTHQHKVENTNNSPTKTLEGCTESGKKRGSSYCKLGEAVVQRLHKSFKENQ 771
Query: 513 LPPRSVKEGLSKELGIDAAKVSKWFKNARY 542
P R+ KE L++ELG+ +V KWF N+R+
Sbjct: 772 YPERTAKESLAQELGLTFQQVDKWFGNSRW 801
>Medtr3g088665.1 | PHD-finger protein | LC | chr3:40402136-40407486
| 20130731
Length = 800
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 229 YHEHIFCANCKLREAFPDND---IILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCNF 285
Y +C +C + D D I+LCDG C+ A+H C+ PPLD+ IP G WFC
Sbjct: 675 YGYWWYCPSCICQVCLTDQDDSRIVLCDG-CDHAYHIYCMKPPLDS--IPQGK--WFCRK 729
Query: 286 CECKIE-ILEATNAHLGTQI 304
C+ I+ I +A A+ Q+
Sbjct: 730 CDAGIKAISQAKKAYESNQL 749