Miyakogusa Predicted Gene

Lj6g3v1331890.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1331890.3 Non Characterized Hit- tr|I1JRP0|I1JRP0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57407
PE,46.15,3e-19,KH_1,K Homology domain, type 1; Eukaryotic type
KH-domain (KH-domain type I),NULL; no description,NU,CUFF.59361.3
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650...   215   2e-56
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286...   191   2e-49
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764...   103   7e-23
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764...   103   1e-22
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114...    84   9e-17
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114...    84   9e-17
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114...    84   9e-17

>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
           chr2:16509240-16516412 | 20130731
          Length = 470

 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/189 (75%), Positives = 157/189 (83%), Gaps = 12/189 (6%)

Query: 1   MPPSAKRDSVFVDRESQLDSLLPSSTMSLYGQDASHSNIRSSALSRVGAPIVTTVIQTMQ 60
           +P   KRDSVF DRES LDSLL SSTMSLYGQD+S S +RSS+LSRVGAPIVTTVIQTMQ
Sbjct: 283 IPFPTKRDSVFADRESHLDSLLSSSTMSLYGQDSSLSGVRSSSLSRVGAPIVTTVIQTMQ 342

Query: 61  IPLSYAEDIIGIQGKNIDYIRRASGAILIVQESRVPDEIIVEIKGTSSQVQLAQELIQDI 120
           IPLSYAEDIIGIQG NIDYIRR SGAIL VQESRVPDEI+VEIKGT+SQVQ AQ+LIQ++
Sbjct: 343 IPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIVVEIKGTTSQVQTAQQLIQEV 402

Query: 121 INSHREPVASSYGRLDA-----DLRSSYSQM------STAPRFSSSMSSQPYNTGYGASG 169
           I+SHREPV +SYGRLDA      LRS YSQ       +T+    SS+SSQPY TGYGASG
Sbjct: 403 ISSHREPVTNSYGRLDAGRMDVGLRSLYSQSSYSQLGNTSRIPPSSLSSQPY-TGYGASG 461

Query: 170 LGDYSTFRL 178
           LGDYSTFRL
Sbjct: 462 LGDYSTFRL 470


>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
           chr4:52864244-52858917 | 20130731
          Length = 431

 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/174 (74%), Positives = 144/174 (82%), Gaps = 2/174 (1%)

Query: 6   KRDSVFVDRESQLDSLLPSSTMSLYGQDASHSNIRSS-ALSRVGAPIVTTVIQTMQIPLS 64
           KRDS F DRESQLDSLL SSTMSLYGQD+S  +   S A +R  A IVTTVIQTMQIPLS
Sbjct: 259 KRDSFFADRESQLDSLLSSSTMSLYGQDSSSISGLRSSAFNRASASIVTTVIQTMQIPLS 318

Query: 65  YAEDIIGIQGKNIDYIRRASGAILIVQESRVPDEIIVEIKGTSSQVQLAQELIQDIINSH 124
           YAEDIIGIQG NIDYIRR SGAIL VQESRVPDEIIVEIKGTS+QVQ AQ+LIQ++I +H
Sbjct: 319 YAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSTQVQTAQQLIQEVITNH 378

Query: 125 REPVASSYGRLDADLRSSYSQMSTAPRFSSSMSSQPYNTGYGASGLGDYSTFRL 178
            E +AS+Y RLD  LRSSYSQ+ ++   SSS+ SQPYN GYG+SG GDYSTFRL
Sbjct: 379 NETIASNYARLDTGLRSSYSQLGSSSYPSSSLPSQPYN-GYGSSGPGDYSTFRL 431


>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
           chr7:47649189-47656173 | 20130731
          Length = 510

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 99/173 (57%), Gaps = 11/173 (6%)

Query: 1   MPPSAKRDSVFVDRE--SQLDSLLPSSTMSLYGQDASHSNIRSSALSRVGAPIVTTVIQT 58
           MPP  + D+ +   E    LD   P   +S YG+DAS   + +S+ ++    +VT + Q 
Sbjct: 335 MPPRRQVDNYYPPAEMPPPLDKQ-PHHGISAYGRDAS-IGVHASSNTQSAPSMVTQITQQ 392

Query: 59  MQIPLSYAEDIIGIQGKNIDYIRRASGAILIVQESR-VPDEIIVEIKGTSSQVQLAQELI 117
           MQIPLSYA+ +IG  G NI YIRRASGA + +QE+R VP E+ VEI GT+SQVQ AQ+LI
Sbjct: 393 MQIPLSYADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 452

Query: 118 QDIINSHREPVASSYGRLDADLRSSYSQMSTAPRFSSSMSSQPYNTGY-GASG 169
           Q+ +     P     G   AD        ++ P  SS  +S P N G+ GA G
Sbjct: 453 QNFMAEAAAPAQQQTGGPPAD-----QGYNSYPAHSSVYASPPSNPGHAGAYG 500


>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
           chr7:47649475-47656173 | 20130731
          Length = 442

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 99/173 (57%), Gaps = 11/173 (6%)

Query: 1   MPPSAKRDSVFVDRE--SQLDSLLPSSTMSLYGQDASHSNIRSSALSRVGAPIVTTVIQT 58
           MPP  + D+ +   E    LD   P   +S YG+DAS   + +S+ ++    +VT + Q 
Sbjct: 267 MPPRRQVDNYYPPAEMPPPLDKQ-PHHGISAYGRDAS-IGVHASSNTQSAPSMVTQITQQ 324

Query: 59  MQIPLSYAEDIIGIQGKNIDYIRRASGAILIVQESR-VPDEIIVEIKGTSSQVQLAQELI 117
           MQIPLSYA+ +IG  G NI YIRRASGA + +QE+R VP E+ VEI GT+SQVQ AQ+LI
Sbjct: 325 MQIPLSYADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 384

Query: 118 QDIINSHREPVASSYGRLDADLRSSYSQMSTAPRFSSSMSSQPYNTGY-GASG 169
           Q+ +     P     G   AD        ++ P  SS  +S P N G+ GA G
Sbjct: 385 QNFMAEAAAPAQQQTGGPPAD-----QGYNSYPAHSSVYASPPSNPGHAGAYG 432


>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
           chr1:31149687-31143883 | 20130731
          Length = 568

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 53  TTVIQTMQIPLSYAEDIIGIQGKNIDYIRRASGAILIVQESR-VPDEIIVEIKGTSSQVQ 111
           T V Q MQIPLS+A+ +IG  G NI YIRRASGA + +QE+R VP E+ VEI GT+SQ+Q
Sbjct: 439 TKVTQHMQIPLSFADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQ 498

Query: 112 LAQELIQDII 121
            AQ+L+Q+ +
Sbjct: 499 AAQQLVQNFM 508


>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
           chr1:31149683-31143883 | 20130731
          Length = 568

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 53  TTVIQTMQIPLSYAEDIIGIQGKNIDYIRRASGAILIVQESR-VPDEIIVEIKGTSSQVQ 111
           T V Q MQIPLS+A+ +IG  G NI YIRRASGA + +QE+R VP E+ VEI GT+SQ+Q
Sbjct: 439 TKVTQHMQIPLSFADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQ 498

Query: 112 LAQELIQDII 121
            AQ+L+Q+ +
Sbjct: 499 AAQQLVQNFM 508


>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
           chr1:31149691-31143604 | 20130731
          Length = 567

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 53  TTVIQTMQIPLSYAEDIIGIQGKNIDYIRRASGAILIVQESR-VPDEIIVEIKGTSSQVQ 111
           T V Q MQIPLS+A+ +IG  G NI YIRRASGA + +QE+R VP E+ VEI GT+SQ+Q
Sbjct: 438 TKVTQHMQIPLSFADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQ 497

Query: 112 LAQELIQDII 121
            AQ+L+Q+ +
Sbjct: 498 AAQQLVQNFM 507