Miyakogusa Predicted Gene
- Lj6g3v1331890.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1331890.1 Non Characterized Hit- tr|I1JRP0|I1JRP0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57407 PE,46.15,3e-19,K
homology RNA-binding domain,K Homology domain; KH DOMAIN CONTAINING
RNA BINDING PROTEIN,NULL; no d,CUFF.59361.1
(323 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650... 342 3e-94
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 326 2e-89
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 184 1e-46
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 184 1e-46
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 184 1e-46
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 181 8e-46
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 181 8e-46
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 96 5e-20
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 90 3e-18
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 90 3e-18
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070... 87 2e-17
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070... 87 3e-17
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070... 86 5e-17
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070... 86 5e-17
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070... 86 5e-17
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 86 6e-17
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 86 6e-17
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 86 7e-17
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 86 7e-17
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 86 7e-17
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 85 7e-17
Medtr5g031720.1 | RNA-binding KH domain protein | HC | chr5:1360... 80 2e-15
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 79 8e-15
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 79 8e-15
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 77 3e-14
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163... 69 5e-12
Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163... 65 6e-11
Medtr3g091800.1 | RNA-binding KH domain protein | HC | chr3:4179... 58 1e-08
Medtr1g016760.1 | RNA-binding KH domain protein | HC | chr1:4457... 56 4e-08
Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | H... 55 1e-07
Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | H... 55 1e-07
>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
chr2:16509240-16516412 | 20130731
Length = 470
Score = 342 bits (876), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 160/217 (73%), Positives = 192/217 (88%), Gaps = 2/217 (0%)
Query: 56 KKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLIS 115
++WPGWPGDCV+RL+VPVGKVG IIGRKG+LIKK+C+ET+ARVRVL+A +G PDRI+LIS
Sbjct: 61 QRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILIS 120
Query: 116 GKEELDAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGK 175
GKEEL+AA+SPAMDAVIR+FKRVSGLSE D E KG A T CSIRLL A+TQAI+LIGK
Sbjct: 121 GKEELEAAISPAMDAVIRIFKRVSGLSETDSENKG-PAGVTLCSIRLLVASTQAISLIGK 179
Query: 176 QGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLV 235
QG+ IR+I E++GAS++VLSGDEVQ FATA+ERI++LQGEAL VL ALEAV+GHLRKFLV
Sbjct: 180 QGTIIRSIQESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLRKFLV 239
Query: 236 DHSVLPLFEKTYNTPI-AQDRQAETWSNKSSLHTICR 271
DHS+LP++EKTYN + QDRQAETWS+K LHT +
Sbjct: 240 DHSILPVYEKTYNASLPQQDRQAETWSDKPLLHTTSQ 276
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 157/213 (73%), Positives = 182/213 (85%), Gaps = 1/213 (0%)
Query: 56 KKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLIS 115
K+WPGWPG CV+RL+VPV KVG IIGRKGELIKK CEET AR+RVL+A VGTPDRIVLIS
Sbjct: 35 KRWPGWPGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLIS 94
Query: 116 GKEELDAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGK 175
GKE+L+A LSPAMDA++R+FKRVSGLSE D +AA CSIRLL A+TQAINLIGK
Sbjct: 95 GKEDLEAPLSPAMDAILRIFKRVSGLSETDNN-NTAAAGVALCSIRLLVASTQAINLIGK 153
Query: 176 QGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLV 235
QGS+I+AI ENTGA I+VLSGDE+ S+A ADERII+LQGE LKVL ALEAVVGHLRKFLV
Sbjct: 154 QGSSIKAIQENTGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAVVGHLRKFLV 213
Query: 236 DHSVLPLFEKTYNTPIAQDRQAETWSNKSSLHT 268
D SV+PLFEKT N I+QDRQ + W++K SL++
Sbjct: 214 DSSVIPLFEKTCNATISQDRQTDAWADKPSLYS 246
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 129/190 (67%), Gaps = 8/190 (4%)
Query: 56 KKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLIS 115
KKWPGWPG+ V+R++VP KVG IIGRKGE IKKI EETRARV++L+ GT +R V++S
Sbjct: 38 KKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVS 97
Query: 116 GKEELDAALSPAMDAVIRVFKR-VSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIG 174
K+E ++L PA+D +++ KR + GL G A S + L A+QA +LIG
Sbjct: 98 AKDEPGSSLPPAVDGLLKAHKRLIDGLDAPSG-------LAGKVSTKFLVPASQAGSLIG 150
Query: 175 KQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFL 234
KQG T+++I E + ++VL +++ FA D+R++E+ G+ + V A+E + HL+KFL
Sbjct: 151 KQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFL 210
Query: 235 VDHSVLPLFE 244
VD S++P+FE
Sbjct: 211 VDRSIIPIFE 220
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 132/190 (69%), Gaps = 4/190 (2%)
Query: 56 KKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLIS 115
KKW GWPG+ V+R++VP KVGSIIGRKGE IKKI EETRARV++L+ GT +R V++S
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215
Query: 116 GKEELDAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSI-RLLTAATQAINLIG 174
KEE D + PA++ ++RV K+V+ + E +A A SI RLL A TQA +LIG
Sbjct: 216 AKEEPDRPIPPAVEGLLRVHKQVANVVS---EPADTAQGAGRPSITRLLVADTQAGSLIG 272
Query: 175 KQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFL 234
KQGSTI+ ++TG +I++L + + FA D+ I+E+QGE V A+E + HLRKFL
Sbjct: 273 KQGSTIKIFQDSTGCNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFL 332
Query: 235 VDHSVLPLFE 244
VD S++ +FE
Sbjct: 333 VDRSIVGVFE 342
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 129/190 (67%), Gaps = 8/190 (4%)
Query: 56 KKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLIS 115
KKWPGWPG+ V+R++VP KVG IIGRKGE IKKI EETRARV++L+ GT +R V++S
Sbjct: 106 KKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVS 165
Query: 116 GKEELDAALSPAMDAVIRVFKR-VSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIG 174
K+E ++L PA+D +++ KR + GL G A S + L A+QA +LIG
Sbjct: 166 AKDEPGSSLPPAVDGLLKAHKRLIDGLDAPSG-------LAGKVSTKFLVPASQAGSLIG 218
Query: 175 KQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFL 234
KQG T+++I E + ++VL +++ FA D+R++E+ G+ + V A+E + HL+KFL
Sbjct: 219 KQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFL 278
Query: 235 VDHSVLPLFE 244
VD S++P+FE
Sbjct: 279 VDRSIIPIFE 288
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/191 (50%), Positives = 133/191 (69%), Gaps = 5/191 (2%)
Query: 56 KKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLIS 115
KKW GWPG+ V+R++VP KVGSIIGRKGE IKKI EETRARV++L+ GT +R V++S
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215
Query: 116 GKEELDAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSI-RLLTAATQAINLIG 174
KEE D + PA++ ++RV K+V+ + E +A A SI RLL A TQA +LIG
Sbjct: 216 AKEEPDRPIPPAVEGLLRVHKQVANVVS---EPADTAQGAGRPSITRLLVADTQAGSLIG 272
Query: 175 KQGSTIRAIHENTGASIKVL-SGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKF 233
KQGSTI+ ++TG +I++L S + + FA D+ I+E+QGE V A+E + HLRKF
Sbjct: 273 KQGSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKF 332
Query: 234 LVDHSVLPLFE 244
LVD S++ +FE
Sbjct: 333 LVDRSIVGVFE 343
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/191 (50%), Positives = 133/191 (69%), Gaps = 5/191 (2%)
Query: 56 KKWPGWPGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLIS 115
KKW GWPG+ V+R++VP KVGSIIGRKGE IKKI EETRARV++L+ GT +R V++S
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215
Query: 116 GKEELDAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSI-RLLTAATQAINLIG 174
KEE D + PA++ ++RV K+V+ + E +A A SI RLL A TQA +LIG
Sbjct: 216 AKEEPDRPIPPAVEGLLRVHKQVANVVS---EPADTAQGAGRPSITRLLVADTQAGSLIG 272
Query: 175 KQGSTIRAIHENTGASIKVL-SGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKF 233
KQGSTI+ ++TG +I++L S + + FA D+ I+E+QGE V A+E + HLRKF
Sbjct: 273 KQGSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKF 332
Query: 234 LVDHSVLPLFE 244
LVD S++ +FE
Sbjct: 333 LVDRSIVGVFE 343
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 25/246 (10%)
Query: 63 GDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDR--IVLISGKEEL 120
G V+RL+ ++G+ IG+ G +IK + + T AR+R+ +A V P+R +V+++ +
Sbjct: 18 GHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDG 77
Query: 121 DAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTI 180
D +L+P +A+++VF+R+ L A E G+ S RLL A QA +IGK G +
Sbjct: 78 DVSLNP-QEALLKVFERI--LDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVIGKGGMVV 134
Query: 181 RAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVDHSVL 240
I +TG I+VL+ D++ + + IIE+QG A V AL AV G L+
Sbjct: 135 AKIRADTGCRIRVLN-DKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQD-------C 186
Query: 241 PLFEKTYNTPIAQDRQAETWSNKSS---------LHTICRLQQKGILSLWTVKVNWTLYF 291
P ++T + R E + N++S L+ RLQ+ +S +++ N
Sbjct: 187 PPLDRTK---MMGTRPYEAFQNETSAVPHEGLTDLNMDFRLQRSSAISTSSIRSNGVPSK 243
Query: 292 LPPLCL 297
PL +
Sbjct: 244 SHPLSV 249
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 104/212 (49%), Gaps = 7/212 (3%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
+ +R++ ++G+++G+ G ++K + ET A + V V DR++ I+ E ++
Sbjct: 265 EVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISVGPPVVECEDRLITITALENPESR 324
Query: 124 LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAI 183
SPA +AV+ VF R S + + + + + +L+ + Q L+GK G+ + +
Sbjct: 325 FSPAQEAVVLVFCR-SIECCIEKVVDWRSNKESSVTAQLVVPSNQVGVLLGKGGAIVSEM 383
Query: 184 HENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRK--FLVDHS--- 238
+ T SI++ EV A+ +++++++ GE V +AL LR FL+ +
Sbjct: 384 RKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNATRRLRDHIFLIAQNSGG 443
Query: 239 VLPLFEKTYNTPIAQDRQAETWSNKS-SLHTI 269
P + P+ Q+ SN S+H++
Sbjct: 444 TGPYRRPRDSIPLGLGGQSVVGSNHGPSIHSL 475
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 13/179 (7%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLI-------SG 116
D VYR + PV K+GSIIGR GE++K++ +T+A++R+ E G +R+V + +
Sbjct: 48 DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESND 107
Query: 117 KEELDAALSPAMDAVIRVFKRV-----SGLSEADGEIKGSAAAATFCSIRLLTAATQAIN 171
E+ + PAMDA++R+ ++V G+ + D +++ + +LL A+ Q
Sbjct: 108 FEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDME-KVDGGDLVTAKLLVASDQIGC 166
Query: 172 LIGKQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL 230
+IGK G ++ I TGA I++L D + A + ++++ GE V AL V L
Sbjct: 167 VIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPA 127
R V P +G +IG+ G +I +I +++ A ++V ++ D ++ IS +E + S
Sbjct: 299 RFVCPTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPFSAT 358
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
++A + + R S E D I +F S RLL ++++ LIGK GS I + T
Sbjct: 359 IEAAVLLQPRCSEKVERDSGI------LSFTS-RLLVSSSRIGCLIGKGGSIITEMRRLT 411
Query: 188 GASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVD 236
A+I++LS +++ AT D+ ++++ GE +AL V+ LR L D
Sbjct: 412 KANIRILSKEDLPKIATEDDEMVQISGELDIAKDALLQVLTRLRANLFD 460
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 13/179 (7%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLI-------SG 116
D VYR + PV K+GSIIGR GE++K++ +T+A++R+ E G +R+V + +
Sbjct: 48 DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESND 107
Query: 117 KEELDAALSPAMDAVIRVFKRV-----SGLSEADGEIKGSAAAATFCSIRLLTAATQAIN 171
E+ + PAMDA++R+ ++V G+ + D +++ + +LL A+ Q
Sbjct: 108 FEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDME-KVDGGDLVTAKLLVASDQIGC 166
Query: 172 LIGKQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL 230
+IGK G ++ I TGA I++L D + A + ++++ GE V AL V L
Sbjct: 167 VIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPA 127
R V P +G +IG+ G +I +I +++ A ++V ++ D ++ IS +E + S
Sbjct: 299 RFVCPTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPFSAT 358
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
++A + + R S E D I +F S RLL ++++ LIGK GS I + T
Sbjct: 359 IEAAVLLQPRCSEKVERDSGI------LSFTS-RLLVSSSRIGCLIGKGGSIITEMRRLT 411
Query: 188 GASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVD 236
A+I++LS +++ AT D+ ++++ GE +AL V+ LR L D
Sbjct: 412 KANIRILSKEDLPKIATEDDEMVQISGELDIAKDALLQVLTRLRANLFD 460
>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 312
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
D ++R+VVP ++G +IG++G I+KI E TRA +++ +A +R+++IS K+ D
Sbjct: 99 DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DEM 157
Query: 124 LSPAMDAVIR----VFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGST 179
++ A A+ + + K + +A G AA T IRLL A +QA LIG G
Sbjct: 158 VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANT---IRLLIAGSQAGGLIGMSGQN 214
Query: 180 IRAIHENTGASIKVLSGDEVQSFATADE--RIIELQGEALKVLNALEAVVGHLRK 232
I + ++GA I VL+ ++ A+A E R+++L G+ V+ ALE + LR+
Sbjct: 215 IEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
chr7:30700621-30706773 | 20130731
Length = 306
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
D ++R+VVP ++G +IG++G I+KI E TRA +++ +A +R+++IS K+ D
Sbjct: 99 DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DEM 157
Query: 124 LSPAMDAVIR----VFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGST 179
++ A A+ + + K + +A G AA T IRLL A +QA LIG G
Sbjct: 158 VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANT---IRLLIAGSQAGGLIGMSGQN 214
Query: 180 IRAIHENTGASIKVLSGDEVQSFATADE--RIIELQGEALKVLNALEAVVGHLRK 232
I + ++GA I VL+ ++ A+A E R+++L G+ V+ ALE + LR+
Sbjct: 215 IEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707328 | 20130731
Length = 379
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
D ++R+VVP ++G +IG++G I+KI E TRA +++ +A +R+++IS K+ D
Sbjct: 99 DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DEM 157
Query: 124 LSPAMDAVIR----VFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGST 179
++ A A+ + + K + +A G AA T IRLL A +QA LIG G
Sbjct: 158 VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANT---IRLLIAGSQAGGLIGMSGQN 214
Query: 180 IRAIHENTGASIKVLSGDEVQSFATADE--RIIELQGEALKVLNALEAVVGHLRK 232
I + ++GA I VL+ ++ A+A E R+++L G+ V+ ALE + LR+
Sbjct: 215 IEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 379
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
D ++R+VVP ++G +IG++G I+KI E TRA +++ +A +R+++IS K+ D
Sbjct: 99 DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DEM 157
Query: 124 LSPAMDAVIR----VFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGST 179
++ A A+ + + K + +A G AA T IRLL A +QA LIG G
Sbjct: 158 VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANT---IRLLIAGSQAGGLIGMSGQN 214
Query: 180 IRAIHENTGASIKVLSGDEVQSFATADE--RIIELQGEALKVLNALEAVVGHLRK 232
I + ++GA I VL+ ++ A+A E R+++L G+ V+ ALE + LR+
Sbjct: 215 IEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707393 | 20130731
Length = 379
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
D ++R+VVP ++G +IG++G I+KI E TRA +++ +A +R+++IS K+ D
Sbjct: 99 DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DEM 157
Query: 124 LSPAMDAVIR----VFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGST 179
++ A A+ + + K + +A G AA T IRLL A +QA LIG G
Sbjct: 158 VTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANT---IRLLIAGSQAGGLIGMSGQN 214
Query: 180 IRAIHENTGASIKVLSGDEVQSFATADE--RIIELQGEALKVLNALEAVVGHLRK 232
I + ++GA I VL+ ++ A+A E R+++L G+ V+ ALE + LR+
Sbjct: 215 IEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGK------ 117
D V+R + P K+GSIIGR GE++K++ ET+A++R+ E G +R+V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 118 -EELDAALSPAMDAVIRVFKRVSGLS-EADGEIKGSAAAATFCSIRLLTAATQAINLIGK 175
++ D +SPA DA+ ++ RV +D E +G + +LL + Q ++GK
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQV----NAKLLVPSDQIGCVLGK 161
Query: 176 QGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL 230
G ++ + TGA I++L D V + A + ++++ G+A V AL + L
Sbjct: 162 GGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPA 127
RLV P G +G +IG+ G +I +I +++ A ++V ++ G D ++ IS KE + SP
Sbjct: 292 RLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGD-DCLITISTKEFFEETFSPT 350
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
++A + + R S SE D I +F + RLL ++++ LIGK GS I + T
Sbjct: 351 VEAAVLLQPRCSEKSERDSGI------ISF-TTRLLVSSSRIGCLIGKGGSIITEMRRLT 403
Query: 188 GASIKVLSGDEVQSFATADERIIE 211
++I++LS + + A+ D+ +++
Sbjct: 404 KSNIRILSKENLPKIASDDDEMVQ 427
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 97/172 (56%), Gaps = 10/172 (5%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
+ VY+++ KVGS+IG+ G +++ + ET A +++++A + +R+V+IS E D
Sbjct: 226 EVVYKMLCQQDKVGSLIGKGGSVVRALQNETGASIQIVDAGPDSDERVVVISALENSDQK 285
Query: 124 LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAI 183
SPA DAVIRV R L+E E + A RLL + Q L+GK G I +
Sbjct: 286 HSPAQDAVIRVHGR---LTEIGFEHSNAVVA------RLLVRSPQVGCLLGKGGHVISEM 336
Query: 184 HENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLV 235
TGA+I++ S ++++ + + +E ++++ G V +AL + +R+ ++
Sbjct: 337 RRVTGANIRIFSKEQIK-YISHNEEVVQVIGTLQSVQDALFHITSRIRETII 387
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGK------ 117
D V+R + P K+GSIIGR GE++K++ ET+A++R+ E G +R+V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 118 -EELDAALSPAMDAVIRVFKRVSGLS-EADGEIKGSAAAATFCSIRLLTAATQAINLIGK 175
++ D +SPA DA+ ++ RV +D E +G + +LL + Q ++GK
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQV----NAKLLVPSDQIGCVLGK 161
Query: 176 QGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL 230
G ++ + TGA I++L D V + A + ++++ G+A V AL + L
Sbjct: 162 GGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPA 127
RLV P G +G +IG+ G +I +I +++ A ++V ++ G D ++ IS KE + SP
Sbjct: 292 RLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGD-DCLITISTKEFFEETFSPT 350
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
++A + + R S SE D I +F + RLL ++++ LIGK GS I + T
Sbjct: 351 VEAAVLLQPRCSEKSERDSGI------ISFTT-RLLVSSSRIGCLIGKGGSIITEMRRLT 403
Query: 188 GASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVD-HSVLPLF 243
++I++LS + + A+ D+ ++++ G+ +AL V+ LR L D +P F
Sbjct: 404 KSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGK------ 117
D V+R + P K+GSIIGR GE++K++ ET+A++R+ E G +R+V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 118 -EELDAALSPAMDAVIRVFKRVSGLS-EADGEIKGSAAAATFCSIRLLTAATQAINLIGK 175
++ D +SPA DA+ ++ RV +D E +G + +LL + Q ++GK
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQV----NAKLLVPSDQIGCVLGK 161
Query: 176 QGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL 230
G ++ + TGA I++L D V + A + ++++ G+A V AL + L
Sbjct: 162 GGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPA 127
RLV P G +G +IG+ G +I +I +++ A ++V ++ G D ++ IS KE + SP
Sbjct: 292 RLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGD-DCLITISTKEFFEETFSPT 350
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
++A + + R S SE D I +F + RLL ++++ LIGK GS I + T
Sbjct: 351 VEAAVLLQPRCSEKSERDSGI------ISFTT-RLLVSSSRIGCLIGKGGSIITEMRRLT 403
Query: 188 GASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVD-HSVLPLF 243
++I++LS + + A+ D+ ++++ G+ +AL V+ LR L D +P F
Sbjct: 404 KSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGK------ 117
D V+R + P K+GSIIGR GE++K++ ET+A++R+ E G +R+V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 118 -EELDAALSPAMDAVIRVFKRVSGLS-EADGEIKGSAAAATFCSIRLLTAATQAINLIGK 175
++ D +SPA DA+ ++ RV +D E +G + +LL + Q ++GK
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQV----NAKLLVPSDQIGCVLGK 161
Query: 176 QGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL 230
G ++ + TGA I++L D V + A + ++++ G+A V AL + L
Sbjct: 162 GGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPA 127
RLV P G +G +IG+ G +I +I +++ A ++V ++ G D ++ IS KE + SP
Sbjct: 292 RLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGD-DCLITISTKEFFEETFSPT 350
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
++A + + R S SE D I +F + RLL ++++ LIGK GS I + T
Sbjct: 351 VEAAVLLQPRCSEKSERDSGI------ISFTT-RLLVSSSRIGCLIGKGGSIITEMRRLT 403
Query: 188 GASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVD-HSVLPLF 243
++I++LS + + A+ D+ ++++ G+ +AL V+ LR L D +P F
Sbjct: 404 KSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGK------ 117
D V+R + P K+GSIIGR GE++K++ ET+A++R+ E G +R+V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 118 -EELDAALSPAMDAVIRVFKRVSGLS-EADGEIKGSAAAATFCSIRLLTAATQAINLIGK 175
++ D +SPA DA+ ++ RV +D E +G + +LL + Q ++GK
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQV----NAKLLVPSDQIGCVLGK 161
Query: 176 QGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL 230
G ++ + TGA I++L D V + A + ++++ G+A V AL + L
Sbjct: 162 GGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPA 127
RLV P G +G +IG+ G +I +I +++ A ++V ++ G D ++ IS KE + SP
Sbjct: 292 RLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGD-DCLITISTKEFFEETFSPT 350
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
++A + + R S SE D I +F + RLL ++++ LIGK GS I + T
Sbjct: 351 VEAAVLLQPRCSEKSERDSGI------ISFTT-RLLVSSSRIGCLIGKGGSIITEMRRLT 403
Query: 188 GASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFLVD-HSVLPLF 243
++I++LS + + A+ D+ ++++ G+ +AL V+ LR L D +P F
Sbjct: 404 KSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
>Medtr5g031720.1 | RNA-binding KH domain protein | HC |
chr5:13608841-13602499 | 20130731
Length = 596
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 25/174 (14%)
Query: 62 PGDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGK---- 117
PG +RLV VG +IG G ++ ++ ET ++ +A VGT DR++L+ G
Sbjct: 36 PGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDR 95
Query: 118 -----EELDAALSPAMDAVIRVFKRVSGLSE---ADGEIKGSAAAATFCSIRLLTAATQA 169
+ + +S A + V+RVF RV GL +GE+ G +LL ++Q
Sbjct: 96 KGIVLGDREMEVSNAQEGVVRVFDRVWGLESEKGGNGEVYG----------KLLAHSSQV 145
Query: 170 INLIGKQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNAL 223
++GK G I I N+G++I+V A DE +I + GE+L V AL
Sbjct: 146 GAIVGKGGKNISNIRNNSGSNIRVCPAPHC---AAKDEELILITGESLAVKKAL 196
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 10/191 (5%)
Query: 66 VYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGT-PDRIVLISGKEELDAAL 124
V+RL+ GS+IG+KG +++ T A + V +G +RIV IS E L+++
Sbjct: 276 VFRLLCSNNVAGSVIGKKGSIVRTFEIRTGASI-VFAPPLGQYEERIVTISAFENLESSN 334
Query: 125 SPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIH 184
SPA DAVI VF R++ +G +A + + L+T +T + L G +G I +
Sbjct: 335 SPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTARLLITTSTLHL-LTGNEGQVISELR 393
Query: 185 ENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLR------KFLVDHS 238
+ +GA I++L G+ + + A+ ++ ++++ G V NAL + +R + L +
Sbjct: 394 QVSGADIQLLHGEPIPN-ASDNDVVVQITGGYRCVENALRKITSIIRDNPLTNELLAEAK 452
Query: 239 VLPLFEKTYNT 249
+ P F +T
Sbjct: 453 IKPSFPLNKDT 463
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 67 YRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSP 126
+RL+ P VG++IG+ G +IK + +ET + ++V+EA G+ D I++ISG D +SP
Sbjct: 314 FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISP 373
Query: 127 AMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHEN 186
+A+ RV R+ S A + K + A R++ ++ L+GK GS I +
Sbjct: 374 VQEAIFRVQNRI---SRAMLDSKEHSMLA-----RVIVSSKHIGCLLGKGGSIIAEMRNL 425
Query: 187 TGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRK-------------- 232
+GA I++L D+ + D+ +I++ G V +AL + LR
Sbjct: 426 SGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRDAFPSANFPS 485
Query: 233 ---FLVDHSVLPLF 243
FL HS P +
Sbjct: 486 NSAFLDQHSPFPPY 499
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
M AV+ VF+RV+ E +G G + + +RLL + Q ++GK GS I+ + +
Sbjct: 141 MRAVMLVFERVA---EDEG---GDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAES 194
Query: 188 GASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL-RKFLVDHSVLP 241
GA I++L +E+ + A+ + ++++ G V AL++V L DH LP
Sbjct: 195 GAQIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLVENSPRDHESLP 249
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 67 YRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSP 126
+RL+ P VG++IG+ G +IK + +ET + ++V+EA G+ D I++ISG D +SP
Sbjct: 314 FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISP 373
Query: 127 AMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHEN 186
+A+ RV R+ S A + K + A R++ ++ L+GK GS I +
Sbjct: 374 VQEAIFRVQNRI---SRAMLDSKEHSMLA-----RVIVSSKHIGCLLGKGGSIIAEMRNL 425
Query: 187 TGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRK-------------- 232
+GA I++L D+ + D+ +I++ G V +AL + LR
Sbjct: 426 SGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRDAFPSANFPS 485
Query: 233 ---FLVDHSVLPLF 243
FL HS P +
Sbjct: 486 NSAFLDQHSPFPPY 499
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 128 MDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENT 187
M AV+ VF+RV+ E +G G + + +RLL + Q ++GK GS I+ + +
Sbjct: 141 MRAVMLVFERVA---EDEG---GDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAES 194
Query: 188 GASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL-RKFLVDHSVLP 241
GA I++L +E+ + A+ + ++++ G V AL++V L DH LP
Sbjct: 195 GAQIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLVENSPRDHESLP 249
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 91/173 (52%), Gaps = 5/173 (2%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
+ ++++ ++G +IG+ G +I+ + ET A V V + DR++ I+ E ++
Sbjct: 330 EITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASESPESR 389
Query: 124 LSPAMDAVIRVFKRV--SGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIR 181
SPA A + VF R +G+ + I + + +L+ ++ Q L+GK G +
Sbjct: 390 YSPAQKATVLVFSRSVEAGIEKG---IDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVS 446
Query: 182 AIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFL 234
+ + TGASI+++ D+V A+ +++++++ GE V +AL G LR L
Sbjct: 447 EMRKATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNL 499
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 94/183 (51%), Gaps = 18/183 (9%)
Query: 63 GDCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDA 122
G +RL+ ++G +IG+ G +IK + T A++R+ ++ +PDR++++ G +D
Sbjct: 46 GHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDG 105
Query: 123 A--------------LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQ 168
+S A +A++RVF R+ E E++G S RL+ + Q
Sbjct: 106 KVMVRSHSGDGEAIEVSKAQEALLRVFDRI---LEVAAEMEGIELGDRTVSCRLVADSAQ 162
Query: 169 AINLIGKQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVG 228
A ++IGK G + I ++TG I V D + + ++ + +IE++G V AL AV
Sbjct: 163 AGSVIGKGGKVVEKIKKDTGCKIWVCK-DNLPACISSPDEVIEIEGSVSSVKKALVAVSR 221
Query: 229 HLR 231
+L+
Sbjct: 222 NLQ 224
>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
chr2:6163891-6155394 | 20130731
Length = 628
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 67 YRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLI------------ 114
YR++ P +GS+IG+ G++I I +E+RA+V+V++ G R++ I
Sbjct: 44 YRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEI 103
Query: 115 SGKEELDAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIG 174
+ + + L A DA+I+V +S E G+ + C I L ++Q+ LIG
Sbjct: 104 EDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQI--LVPSSQSAILIG 161
Query: 175 KQGSTIRAIHENTGASIKVL---SGDEVQSFATADERIIELQGEALKVLNALEAVVGHLR 231
K G+TI+ + T +IKV+ + D S A + + + GE+ V AL AV +
Sbjct: 162 KAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLITGESEAVKRALFAVSTIMY 221
Query: 232 KF 233
KF
Sbjct: 222 KF 223
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
+ + R++ P K+G +IG+ G IK++ + + AR+ V ++ + ++ I+ E
Sbjct: 312 ELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDL 371
Query: 124 LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAI 183
S A++AV+ + ++++ E D + SIRLL + +IG+ G+ I I
Sbjct: 372 KSVAVEAVLLLQEKIN--DEDDAPV----------SIRLLVPSKVIGCIIGRSGAIINEI 419
Query: 184 HENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFL-----VDHS 238
+ T A I++ ++ + +A ++ ++E+ GE V +AL +V LR+ + +DH+
Sbjct: 420 RKRTKADIQISRSNKPK-YADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNKDIDHN 478
>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
chr2:6163835-6158039 | 20130731
Length = 631
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 96/199 (48%), Gaps = 19/199 (9%)
Query: 67 YRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLI------------ 114
YR++ P +GS+IG+ G++I I +E+RA+V+V++ G R++ I
Sbjct: 44 YRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEI 103
Query: 115 SGKEELDAALSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIG 174
+ + + L A DA+I+V +S E G+ + C I L ++Q+ LIG
Sbjct: 104 EDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQI--LVPSSQSAILIG 161
Query: 175 KQGSTIRAIHENTGASIKVL---SGDEVQSFATADERIIELQGEALKVLNALEAVVGHLR 231
K G+TI+ + T +IKV+ + D S A + + L GE+ V AL AV +
Sbjct: 162 KAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFV-LVGESEAVKRALFAVSTIMY 220
Query: 232 KFLVDHSVLPLFEKTYNTP 250
KF + PL TP
Sbjct: 221 KFSPKEDI-PLDTTVPETP 238
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
+ + R++ P K+G +IG+ G IK++ + + AR+ V ++ + ++ I+ E
Sbjct: 311 ELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDL 370
Query: 124 LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAI 183
S A++AV+ + ++++ E D + SIRLL + +IG+ G+ I I
Sbjct: 371 KSVAVEAVLLLQEKIN--DEDDAPV----------SIRLLVPSKVIGCIIGRSGAIINEI 418
Query: 184 HENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFL-----VDHS 238
+ T A I++ ++ + +A ++ ++E+ GE V +AL +V LR+ + +DH+
Sbjct: 419 RKRTKADIQISRSNKPK-YADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNKDIDHN 477
>Medtr3g091800.1 | RNA-binding KH domain protein | HC |
chr3:41793839-41789438 | 20130731
Length = 646
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 10/176 (5%)
Query: 67 YRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELD----- 121
YRL+ + G +IG+ G +IK I + T A + V E G +RI+ IS D
Sbjct: 65 YRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGRM 124
Query: 122 AALSPAMDAVIRVFKRV----SGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQG 177
SPA +A++ + +R+ G + + G S RL+ + +L+GK G
Sbjct: 125 PQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLGKGG 184
Query: 178 STIRAIHENTGASIKVLSGDE-VQSFATADERIIELQGEALKVLNALEAVVGHLRK 232
I + T I++L D + + E I+++ G+ V NA + LR+
Sbjct: 185 KIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLRE 240
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 64 DCVYRLVVPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAA 123
D ++R++ PV +V I+G G +++ + + V++ + G+ +++V+I+ +E +
Sbjct: 330 DLIFRILCPVDRVDRIVGESGGILELLQDRVGVDVQISDRVGGSDEQMVIITSEEGPNDT 389
Query: 124 LSPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAI 183
+ PA +A++ + + LS+ + + RL+ ++ L GK S + I
Sbjct: 390 MFPAQEALLHIQTHIVDLSD------------SIITTRLIVPSSDIECLDGKNAS-LSEI 436
Query: 184 HENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHLRKFL 234
+TGAS+++L +E+ + ++++ GE N + V LR ++
Sbjct: 437 ERSTGASVQILPREELPPCIANTDELVQIVGEIEAARNVILDVTAKLRSYV 487
>Medtr1g016760.1 | RNA-binding KH domain protein | HC |
chr1:4457792-4464676 | 20130731
Length = 627
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 30/173 (17%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARVRV---LEASVGTPDRIVLISGKEELDAAL 124
++ +P G+VG IIG+ GE IK + ++ A+++V ++A +P+R+V ++G +
Sbjct: 115 KIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSD----- 169
Query: 125 SPAMDAVIRVFKRVSGLSEADGE------IKGSAAAATFCSIRLLTAATQAINLIGKQGS 178
A+ ++ K V +E+ G + G A F S+++ I IGK G
Sbjct: 170 --AIATAEKLIKEVLAEAESGGNGLVTRRMTGQGGADEF-SMKIPNNKVGLI--IGKGGE 224
Query: 179 TIRAIHENTGASIKVL-----SGDEVQSFATADERIIELQGEALKVLNALEAV 226
TI+++ TGA I+V+ GD T+ ER ++++G + ++ +A + V
Sbjct: 225 TIKSMQATTGARIQVIPLHLPPGD------TSTERTLKIEGTSEQIESAKQLV 271
>Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARV---RVLEASVGTPDRIVLISGKEELDAAL 124
R +V GS+IG+ G I ++ AR+ R E GT DRI+++SG A+
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSG------AI 92
Query: 125 SPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIH 184
+ + AV + ++ LSE E T +RL+ +IGK G+TIR+
Sbjct: 93 NEVLRAVELILSKL--LSELHSEDDNDVEPKT--KVRLIVPNGSCGGIIGKGGATIRSFI 148
Query: 185 ENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL 230
E + A IK+ D S+ ++RI+ + G + + ++ +V L
Sbjct: 149 EESQAGIKISPQD--NSYYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192
>Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 68 RLVVPVGKVGSIIGRKGELIKKICEETRARV---RVLEASVGTPDRIVLISGKEELDAAL 124
R +V GS+IG+ G I ++ AR+ R E GT DRI+++SG A+
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSG------AI 92
Query: 125 SPAMDAVIRVFKRVSGLSEADGEIKGSAAAATFCSIRLLTAATQAINLIGKQGSTIRAIH 184
+ + AV + ++ LSE E T +RL+ +IGK G+TIR+
Sbjct: 93 NEVLRAVELILSKL--LSELHSEDDNDVEPKT--KVRLIVPNGSCGGIIGKGGATIRSFI 148
Query: 185 ENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL 230
E + A IK+ D S+ ++RI+ + G + + ++ +V L
Sbjct: 149 EESQAGIKISPQD--NSYYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192