Miyakogusa Predicted Gene

Lj6g3v1330870.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1330870.1 tr|G7IG89|G7IG89_MEDTR DNA ligase OS=Medicago
truncatula GN=MTR_2g038030 PE=3 SV=1,90.31,0,DNA ligase/mRNA capping
enzyme, catalytic domain,NULL; seg,NULL; DNA_ligase_A_N,DNA ligase,
ATP-depe,CUFF.59350.1
         (270 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g038030.1 | DNA ligase | HC | chr2:16517930-16532770 | 201...   498   e-141
Medtr2g038030.2 | DNA ligase | HC | chr2:16517930-16532770 | 201...   498   e-141
Medtr4g057340.1 | DNA ligase I, ATP-dependent protein | HC | chr...    55   6e-08
Medtr4g057345.1 | DNA ligase I, ATP-dependent protein | HC | chr...    53   3e-07

>Medtr2g038030.1 | DNA ligase | HC | chr2:16517930-16532770 |
           20130731
          Length = 883

 Score =  498 bits (1283), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/262 (90%), Positives = 252/262 (96%)

Query: 1   MARDSQDALRLINWRKGGAKTGASAGNFALVASEVLQLRQGTASGGLTIKELNDLLDQLA 60
           MA+DS DALRL+NWRKGGAKTGA+AGNFALVA+EVLQLRQGTASGGLTIKELNDLLDQL+
Sbjct: 78  MAKDSHDALRLVNWRKGGAKTGANAGNFALVAAEVLQLRQGTASGGLTIKELNDLLDQLS 137

Query: 61  SSENRAEKNLGLSTLIRKTNTQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTC 120
           SSENR EK L LSTLI+KTN  EMKWIIMIILKDLKLGISE+SIFHEFHPDAEDLFNVTC
Sbjct: 138 SSENRGEKTLVLSTLIQKTNALEMKWIIMIILKDLKLGISERSIFHEFHPDAEDLFNVTC 197

Query: 121 DLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDR 180
           DLKLVCEKL+DRNQRHKRQDIEVGKAVRPQLAKRVANAA+AWKKLHGKEVV ECKFDGDR
Sbjct: 198 DLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAADAWKKLHGKEVVAECKFDGDR 257

Query: 181 IQIHKNGTEIHFFSRNFLDHSEYAHAMSAIIIQNILVDRCILDGEMLVWDTSLNRFAEFG 240
           IQIHKNGTEIHFFSRNF+DHSEYAH MS IIIQNILVDRCILDGEMLVWDTSLNRFAEFG
Sbjct: 258 IQIHKNGTEIHFFSRNFIDHSEYAHGMSEIIIQNILVDRCILDGEMLVWDTSLNRFAEFG 317

Query: 241 SNQEIAKAARDGLDSHRKLCCI 262
           SNQEIAKAARDGL+S+R+LC +
Sbjct: 318 SNQEIAKAARDGLESNRQLCYV 339


>Medtr2g038030.2 | DNA ligase | HC | chr2:16517930-16532770 |
           20130731
          Length = 814

 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/262 (90%), Positives = 252/262 (96%)

Query: 1   MARDSQDALRLINWRKGGAKTGASAGNFALVASEVLQLRQGTASGGLTIKELNDLLDQLA 60
           MA+DS DALRL+NWRKGGAKTGA+AGNFALVA+EVLQLRQGTASGGLTIKELNDLLDQL+
Sbjct: 78  MAKDSHDALRLVNWRKGGAKTGANAGNFALVAAEVLQLRQGTASGGLTIKELNDLLDQLS 137

Query: 61  SSENRAEKNLGLSTLIRKTNTQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTC 120
           SSENR EK L LSTLI+KTN  EMKWIIMIILKDLKLGISE+SIFHEFHPDAEDLFNVTC
Sbjct: 138 SSENRGEKTLVLSTLIQKTNALEMKWIIMIILKDLKLGISERSIFHEFHPDAEDLFNVTC 197

Query: 121 DLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDR 180
           DLKLVCEKL+DRNQRHKRQDIEVGKAVRPQLAKRVANAA+AWKKLHGKEVV ECKFDGDR
Sbjct: 198 DLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAADAWKKLHGKEVVAECKFDGDR 257

Query: 181 IQIHKNGTEIHFFSRNFLDHSEYAHAMSAIIIQNILVDRCILDGEMLVWDTSLNRFAEFG 240
           IQIHKNGTEIHFFSRNF+DHSEYAH MS IIIQNILVDRCILDGEMLVWDTSLNRFAEFG
Sbjct: 258 IQIHKNGTEIHFFSRNFIDHSEYAHGMSEIIIQNILVDRCILDGEMLVWDTSLNRFAEFG 317

Query: 241 SNQEIAKAARDGLDSHRKLCCI 262
           SNQEIAKAARDGL+S+R+LC +
Sbjct: 318 SNQEIAKAARDGLESNRQLCYV 339


>Medtr4g057340.1 | DNA ligase I, ATP-dependent protein | HC |
           chr4:20987930-20995092 | 20130731
          Length = 733

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 43/243 (17%)

Query: 26  GNFALVA----SEVLQLRQGTASGGLTIKELNDLLDQLASSENR----AEKNLGLSTLIR 77
           G+  LVA    S    +R+  A   LTI+++ D    +A    +     +KN   S L  
Sbjct: 208 GDLGLVAQASRSSQTTMRKHDA---LTIRKVFDTFHLIAKESGKDSQEKKKNHIKSLLFA 264

Query: 78  KTNTQEMKWIIMIILKDLKLGISEKSIF------------HEFHPDA------------E 113
            T+ + + +II ++   L++G +E+++             H   P              +
Sbjct: 265 ATDCEPL-YIIRLLQTKLRIGYAEQTLLAALGQAAVHTEEHSNPPPGIKSPLEEAAKIVK 323

Query: 114 DLFNVTCDL-KLVCEKLKDRN-QRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVV 171
            +++V  D  K+V   LKD   +  K+ D   G  V P L+K   + +E   K  G E  
Sbjct: 324 KVYSVLPDYDKIVSALLKDGVWELPKKCDFTPGVPVGPMLSKATKSVSEILNKFQGVEFT 383

Query: 172 VECKFDGDRIQIH--KNGTEIHFFSRNFLDHS-EYAHAMSAII-IQNILVDRCILDGEML 227
            E K+DG+R QIH  +NG+ +  +SRN   ++ +Y   ++A+  ++   V   ILD E++
Sbjct: 384 CEYKYDGERAQIHFLENGS-VEIYSRNAERNTGKYPDVIAAVSRLKKTTVSSFILDCELV 442

Query: 228 VWD 230
            +D
Sbjct: 443 AYD 445


>Medtr4g057345.1 | DNA ligase I, ATP-dependent protein | HC |
           chr4:20998007-21005716 | 20130731
          Length = 777

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 32/203 (15%)

Query: 67  EKNLGLSTLIRKTNTQEMKWIIMIILKDLKLGISEKS---------IFHEFH--PDAE-- 113
           +KN   S L+  T+ + + +II ++   L++G +E++         ++ E H  P  E  
Sbjct: 298 KKNHIKSLLVAATDCEPL-YIIRLLQTKLRIGYAEQTLLTALGQAAVYTEEHSKPPPEIQ 356

Query: 114 -----------DLFNVTCDL-KLVCEKLKDRN-QRHKRQDIEVGKAVRPQLAKRVANAAE 160
                       +++V  D  K+V   LKD   +  K+ D   G  V P L+K     +E
Sbjct: 357 SPFEEAAKIVKKVYSVLPDYDKIVSALLKDGVWELPKKCDFTPGVPVGPMLSKATKGVSE 416

Query: 161 AWKKLHGKEVVVECKFDGDRIQIH--KNGTEIHFFSRNFLDHS-EYAHAMSAII-IQNIL 216
              K    E   E K+DG+R QIH  +NG+ +  +SRN   ++ ++   ++A+  ++   
Sbjct: 417 ILNKFQDVEFTCEYKYDGERAQIHFLENGS-VEIYSRNAERNTGKFPDVVTAVSRLKKTS 475

Query: 217 VDRCILDGEMLVWDTSLNRFAEF 239
           V   ILD E++ +D +  R   F
Sbjct: 476 VTSFILDCELVAYDRTKQRILPF 498