Miyakogusa Predicted Gene

Lj6g3v1329830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1329830.1 tr|B6VJ14|B6VJ14_BROIN Ribosomal protein S1A
(Fragment) OS=Bromus inermis GN=rps1A PE=4 SV=1,68.92,1e-18,S1
RNA-BINDING DOMAIN-CONTAINING PROTEIN,NULL,CUFF.59372.1
         (205 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g012880.1 | ribosomal protein S1 | HC | chr6:4011501-40154...   304   3e-83
Medtr6g012880.2 | ribosomal protein S1 | HC | chr6:4011504-40154...   304   3e-83

>Medtr6g012880.1 | ribosomal protein S1 | HC | chr6:4011501-4015491
           | 20130731
          Length = 204

 Score =  304 bits (779), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 177/205 (86%), Gaps = 1/205 (0%)

Query: 1   MSSYLSRSFSRCNSSLFLCSGKALQSEVLRLGKDTFLVDAGPGSARICMQDEPIGVPINR 60
           MS YLSR F RCNSS FLCSGKALQSEVLRLGK+TFLVDAGPG+ + C++DE   VPIN 
Sbjct: 1   MSIYLSRLFPRCNSSSFLCSGKALQSEVLRLGKETFLVDAGPGTPKNCLRDELTRVPINP 60

Query: 61  ATTRFENKVGFVGQGAGESLIKKKILERFFIDLVAGESLMKDRATARFNELVGSTDGVPG 120
           AT RFENKVGF+ + AGE+ I+KK LER FIDLVAGE L+K+RA ARFN++ GSTD V  
Sbjct: 61  AT-RFENKVGFLDRAAGETHIRKKNLERLFIDLVAGEPLIKERAAARFNDMAGSTDVVTD 119

Query: 121 EPLLLLPRRFRQNRAWLELNKVWRTNTKVKGFMIDKVRGGYSVAIAGFLTFLPFGSYLRR 180
           EPLLLLPRRFRQ+RAW++L+K+WRTNTKVKGF+IDKVRGGYSVAIAGF+ +LPF S+ +R
Sbjct: 120 EPLLLLPRRFRQDRAWMKLHKIWRTNTKVKGFIIDKVRGGYSVAIAGFIAYLPFRSHSKR 179

Query: 181 KKMRISNDRFTIETINPKRSNIVVF 205
           ++ RISND+FTIE+INPK  +I+VF
Sbjct: 180 QRRRISNDQFTIESINPKNKSIMVF 204


>Medtr6g012880.2 | ribosomal protein S1 | HC | chr6:4011504-4015491
           | 20130731
          Length = 204

 Score =  304 bits (779), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 177/205 (86%), Gaps = 1/205 (0%)

Query: 1   MSSYLSRSFSRCNSSLFLCSGKALQSEVLRLGKDTFLVDAGPGSARICMQDEPIGVPINR 60
           MS YLSR F RCNSS FLCSGKALQSEVLRLGK+TFLVDAGPG+ + C++DE   VPIN 
Sbjct: 1   MSIYLSRLFPRCNSSSFLCSGKALQSEVLRLGKETFLVDAGPGTPKNCLRDELTRVPINP 60

Query: 61  ATTRFENKVGFVGQGAGESLIKKKILERFFIDLVAGESLMKDRATARFNELVGSTDGVPG 120
           AT RFENKVGF+ + AGE+ I+KK LER FIDLVAGE L+K+RA ARFN++ GSTD V  
Sbjct: 61  AT-RFENKVGFLDRAAGETHIRKKNLERLFIDLVAGEPLIKERAAARFNDMAGSTDVVTD 119

Query: 121 EPLLLLPRRFRQNRAWLELNKVWRTNTKVKGFMIDKVRGGYSVAIAGFLTFLPFGSYLRR 180
           EPLLLLPRRFRQ+RAW++L+K+WRTNTKVKGF+IDKVRGGYSVAIAGF+ +LPF S+ +R
Sbjct: 120 EPLLLLPRRFRQDRAWMKLHKIWRTNTKVKGFIIDKVRGGYSVAIAGFIAYLPFRSHSKR 179

Query: 181 KKMRISNDRFTIETINPKRSNIVVF 205
           ++ RISND+FTIE+INPK  +I+VF
Sbjct: 180 QRRRISNDQFTIESINPKNKSIMVF 204