Miyakogusa Predicted Gene

Lj6g3v1318670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1318670.1 Non Characterized Hit- tr|C6THQ8|C6THQ8_SOYBN
Putative uncharacterized protein (Fragment)
OS=Glycine,58.33,2e-18,LISH,LisH dimerisation motif; seg,NULL;
Lissencephaly type-1-like homology motif,LisH dimerisation
m,NODE_56480_length_408_cov_67.357841.path2.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g127160.1 | SRP40, carboxy-terminal domain protein | HC | ...   113   5e-26
Medtr4g127160.2 | SRP40, carboxy-terminal domain protein | HC | ...    50   6e-07

>Medtr4g127160.1 | SRP40, carboxy-terminal domain protein | HC |
           chr4:52755202-52750421 | 20130731
          Length = 410

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 74/114 (64%), Gaps = 6/114 (5%)

Query: 1   MPATPPSHKASSSTIFAFTPRQVLLRNQTMKHDADNGXXXXXXXXXXXXXHQSIARYFDR 60
           MPA P   K  S T+F FTPRQVLL N+TMK+   N              +QSIA Y +R
Sbjct: 1   MPANPSGIKGIS-TLFTFTPRQVLLSNRTMKNGTLN-----PEQKQKLLLNQSIALYLER 54

Query: 61  RGLSKSLKKFRSEAKIEKDNVDESSVDLEELFLKYLETCSQDVKSNVNDQKEQG 114
            G SK+LKKF SEAKIE DN + S+VDLEE+  KYLET S+D KS +NDQK QG
Sbjct: 55  SGFSKTLKKFLSEAKIENDNTEGSTVDLEEMCRKYLETGSKDAKSTINDQKAQG 108


>Medtr4g127160.2 | SRP40, carboxy-terminal domain protein | HC |
           chr4:52755176-52750495 | 20130731
          Length = 341

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 76  IEKDNVDESSVDLEELFLKYLETCSQDVKSNVNDQKEQG 114
           ++ DN + S+VDLEE+  KYLET S+D KS +NDQK QG
Sbjct: 1   MQNDNTEGSTVDLEEMCRKYLETGSKDAKSTINDQKAQG 39