Miyakogusa Predicted Gene

Lj6g3v1314090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1314090.1 tr|Q6I608|Q6I608_ORYSJ Os05g0556900 protein
OS=Oryza sativa subsp. japonica GN=OJ1214_E03.11 PE=1
SV,76.27,2e-19,Translation proteins,Translation elongation/initiation
factor/Ribosomal, beta-barrel; 60S RIBOSOMAL
,NODE_44211_length_208_cov_760.216370.path2.1
         (59 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0699s0020.1 | 60S ribosomal protein L35a-3 | HC | scaffold0...   118   9e-28
Medtr0699s0010.1 | 60S ribosomal protein L35a-3 | HC | scaffold0...   117   2e-27
Medtr5g081705.1 | 60S ribosomal protein L35a-3 | HC | chr5:35007...   115   7e-27
Medtr5g081705.2 | 60S ribosomal protein L35a-3 | HC | chr5:35007...    91   3e-19

>Medtr0699s0020.1 | 60S ribosomal protein L35a-3 | HC |
           scaffold0699:7647-4886 | 20130731
          Length = 112

 Score =  118 bits (296), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 54/59 (91%), Positives = 58/59 (98%)

Query: 1   MAYIYKAKVKQNGTHYRCIWGKVIRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI 59
           MAYIYKAKVK+NGTHYRCIWGKV RPHGNSG+VRAKFKSNLPP+SMG+RVRVFMYPSNI
Sbjct: 54  MAYIYKAKVKKNGTHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMGSRVRVFMYPSNI 112


>Medtr0699s0010.1 | 60S ribosomal protein L35a-3 | HC |
           scaffold0699:1724-643 | 20130731
          Length = 112

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 57/59 (96%)

Query: 1   MAYIYKAKVKQNGTHYRCIWGKVIRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI 59
           M YIYKAKVK+NGTHYRCIWGKV RPHGNSG+VRAKFKSNLPP+SMG+RVRVFMYPSNI
Sbjct: 54  MTYIYKAKVKKNGTHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMGSRVRVFMYPSNI 112


>Medtr5g081705.1 | 60S ribosomal protein L35a-3 | HC |
           chr5:35007665-35010755 | 20130731
          Length = 137

 Score =  115 bits (289), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 58/59 (98%)

Query: 1   MAYIYKAKVKQNGTHYRCIWGKVIRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI 59
           +AYIYKAKVK++G+HYRCIWGKV RPHGNSG+VRAKFKSNLPP+SMGARVRVFMYPSNI
Sbjct: 79  LAYIYKAKVKKDGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMGARVRVFMYPSNI 137


>Medtr5g081705.2 | 60S ribosomal protein L35a-3 | HC |
           chr5:35007665-35010398 | 20130731
          Length = 130

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1   MAYIYKAKVKQNGTHYRCIWGKVIRPHGNSGVVRAKFKSNLPPRSM 46
           +AYIYKAKVK++G+HYRCIWGKV RPHGNSG+VRAKFKSNLPP+SM
Sbjct: 79  LAYIYKAKVKKDGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSM 124