Miyakogusa Predicted Gene

Lj6g3v1270800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1270800.1 Non Characterized Hit- tr|F6HGW5|F6HGW5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,38.46,0.008,
,CUFF.59313.1
         (228 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g038710.1 | hypothetical protein | HC | chr2:16949783-1694...   119   3e-27

>Medtr2g038710.1 | hypothetical protein | HC |
           chr2:16949783-16944511 | 20130731
          Length = 625

 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 62/228 (27%)

Query: 1   MKSHIKPPPTKYQASTTDTEETSKARHSEIDKSWNTKPENFLEEGEKSSSLVRNMQKAPV 60
           ++S IKPPPTKYQAS  + +++S+ +H E DKS NT+P  FL+E  KS++LVRN+Q+ PV
Sbjct: 326 IRSPIKPPPTKYQASPIEKKDSSETQHLEQDKSLNTEPRAFLQERLKSATLVRNLQQVPV 385

Query: 61  HFGESRDHMKQLNNVSPEETQQLKELSTIKTLNKQTVSN-------DRKRFKVSYNTDKE 113
             GES++ +K        +T QL ELST    NKQT SN       D    KV  + D+E
Sbjct: 386 QIGESKEKIK--------DTMQL-ELSTKNIPNKQTDSNARNEDQDDESNSKVRNSRDQE 436

Query: 114 EEKSDKVLMRTSAFETVTMSGTMP----EKHSPQKLDSVAHFGDKYHSFESSGVWIFPEE 169
           +E+++++L RTS  ET+ +SG +P    E+++P  L                        
Sbjct: 437 KERNNRILTRTSTCETINVSGKVPLKLSERNTPNNL------------------------ 472

Query: 170 PKKICITTSSKNVMDRVESQATKRLSHQRSLESSKIENIEKVQNHLET 217
                             SQ  K LSH+RSL+ +KIEN++K   + ET
Sbjct: 473 ------------------SQDAKCLSHERSLDFTKIENVDKNVPYTET 502