Miyakogusa Predicted Gene

Lj6g3v1239570.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1239570.1 Non Characterized Hit- tr|C6TG27|C6TG27_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2 S,83.61,0,RNA
recognition motif,RNA recognition motif domain; RRM_1,RNA recognition
motif domain; PUTATIVE UNC,CUFF.59284.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g108290.1 | MKI67 interacting nucleolar phosphoprotein | H...   182   1e-46
Medtr4g127330.2 | RNA-binding (RRM/RBD/RNP motif) family protein...   178   2e-45
Medtr4g127330.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   178   2e-45
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    51   5e-07
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    50   6e-07

>Medtr1g108290.1 | MKI67 interacting nucleolar phosphoprotein | HC |
           chr1:48970128-48966656 | 20130731
          Length = 213

 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/108 (85%), Positives = 95/108 (87%), Gaps = 2/108 (1%)

Query: 15  RVTAIN-KPSE-GPDFLPLEGGPARKLPEQKPLENKGRVLYVGRIPHGFYEKEIEGYFGQ 72
           RV AIN KPSE   DFLPLEGGP RKLPE K LEN   VLY+GRIPHGFYEKE+E YFGQ
Sbjct: 16  RVNAINNKPSEHAADFLPLEGGPGRKLPELKQLENSSPVLYIGRIPHGFYEKEMEAYFGQ 75

Query: 73  FGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 120
           FGTIKRLRI+RNK TGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL
Sbjct: 76  FGTIKRLRISRNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 123


>Medtr4g127330.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:52834251-52836957 | 20130731
          Length = 182

 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 94/112 (83%), Gaps = 5/112 (4%)

Query: 12  SLKRVTAINKPSE---GPDFLPLEGGPARKLPEQKPLENKGRVLYVGRIPHGFYEKEIEG 68
           SLKR+ A  KPS      DFLPL+ GP RKLPE KPLEN   VLY+GRIPHGFYE E+E 
Sbjct: 12  SLKRINA--KPSHSQPAADFLPLDCGPGRKLPELKPLENTSPVLYIGRIPHGFYETEMEA 69

Query: 69  YFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 120
           YFGQFGT+KRLRIARNK TGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL
Sbjct: 70  YFGQFGTVKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 121


>Medtr4g127330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:52834251-52836886 | 20130731
          Length = 182

 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 94/112 (83%), Gaps = 5/112 (4%)

Query: 12  SLKRVTAINKPSE---GPDFLPLEGGPARKLPEQKPLENKGRVLYVGRIPHGFYEKEIEG 68
           SLKR+ A  KPS      DFLPL+ GP RKLPE KPLEN   VLY+GRIPHGFYE E+E 
Sbjct: 12  SLKRINA--KPSHSQPAADFLPLDCGPGRKLPELKPLENTSPVLYIGRIPHGFYETEMEA 69

Query: 69  YFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 120
           YFGQFGT+KRLRIARNK TGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL
Sbjct: 70  YFGQFGTVKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 121


>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:42749843-42753184 | 20130731
          Length = 493

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTM 111
           L++G I     E+ +  YF  +G +K   I +++TTG++R FGF+ F  P VA IV    
Sbjct: 8   LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67

Query: 112 HN 113
           HN
Sbjct: 68  HN 69


>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:42749843-42754792 | 20130731
          Length = 479

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTM 111
           L++G I     E+ +  YF  +G +K   I +++TTG++R FGF+ F  P VA IV    
Sbjct: 8   LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67

Query: 112 HN 113
           HN
Sbjct: 68  HN 69