Miyakogusa Predicted Gene

Lj6g3v1239560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1239560.1 tr|G7IIL3|G7IIL3_MEDTR RecA OS=Medicago
truncatula GN=MTR_2g039670 PE=3 SV=1,84.98,0,RECA_1,DNA
recombination/repair protein RecA, conserved site; DNA REPAIR PROTEIN
RECA,DNA recombinat,CUFF.59283.1
         (426 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g039670.1 | DNA repair and recombination protein | HC | ch...   726   0.0  
Medtr4g126040.1 | DNA repair protein RecA, putative | HC | chr4:...   595   e-170
Medtr7g090880.1 | DNA repair protein RecA, putative | HC | chr7:...   301   7e-82
Medtr8g461220.1 | DNA repair and recombination protein | HC | ch...   270   2e-72

>Medtr2g039670.1 | DNA repair and recombination protein | HC |
           chr2:17387359-17378929 | 20130731
          Length = 424

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/426 (82%), Positives = 380/426 (89%), Gaps = 2/426 (0%)

Query: 1   MARLLRNANTFLLKRSFLHHNLPTRSCYEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEE 60
           MARLLR+  TF L RSF HH+LPTR C + GV+GTSQVLSFST+KGK+RSKSDG +S EE
Sbjct: 1   MARLLRS--TFFLNRSFFHHHLPTRFCSKNGVLGTSQVLSFSTNKGKKRSKSDGSDSGEE 58

Query: 61  NMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGR 120
           NMSKKDLALQQA+DQITS FGKGSIMWLGR+VSPKNVPVVSTGSFALDIALGI GLPKGR
Sbjct: 59  NMSKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPKGR 118

Query: 121 VVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPD 180
           VVEIFGPEASGKTTLALHVI+EAQK GGYCAF+DAEHALDK+LAESIGVNT+NLLLSQPD
Sbjct: 119 VVEIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPD 178

Query: 181 CGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCH 240
           CGEQALSLVDTLIRSG            LVPKGELDGEMGDAHMAMQARLMSQALRKLCH
Sbjct: 179 CGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCH 238

Query: 241 SLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEET 300
           SLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKR+G VKKGEET
Sbjct: 239 SLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRVGFVKKGEET 298

Query: 301 LGSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRN 360
           +GS VLVKVVKNKHAPPFKTAQFELEFGKGICR+AEIIELSIK+K I+KSGSFYEYNG+N
Sbjct: 299 VGSQVLVKVVKNKHAPPFKTAQFELEFGKGICREAEIIELSIKHKFIKKSGSFYEYNGKN 358

Query: 361 YHGKDALKRFLADSSSTEELATKLREKLLNGETDTAPEAQVTIGDVSEETVFPDSTDEEA 420
           YHGKDALK  L +    ++L TKLREKLLN ET+T  E+Q  +GDV+EE + PDSTDEE 
Sbjct: 359 YHGKDALKSHLINGDGLQDLTTKLREKLLNAETETVSESQEMVGDVTEEMLSPDSTDEET 418

Query: 421 AAVVEA 426
           A V EA
Sbjct: 419 AVVAEA 424


>Medtr4g126040.1 | DNA repair protein RecA, putative | HC |
           chr4:52380345-52386177 | 20130731
          Length = 417

 Score =  595 bits (1535), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 324/428 (75%), Positives = 354/428 (82%), Gaps = 13/428 (3%)

Query: 1   MARLLRNANTFLLKRSFLHHNLPTRSCYEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEE 60
           MA LLR  N+ L +  F    +      + G+  TSQ+L FS+ KG+RRSKSDG +S EE
Sbjct: 1   MASLLRT-NSLLTRSLFAAQGV------KLGLSSTSQILHFSS-KGRRRSKSDGSDSGEE 52

Query: 61  NMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGR 120
           NMSKKDLAL QALDQITSAFGKGSIMWLGRS +PK+VPVVSTGSFALDIALG GGLPKGR
Sbjct: 53  NMSKKDLALNQALDQITSAFGKGSIMWLGRSDTPKDVPVVSTGSFALDIALGCGGLPKGR 112

Query: 121 VVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPD 180
           VVEI+GPEASGKTTLALHVI+EAQK GGYC FVDAEHALDKTLAESIGVNT+NLLLSQPD
Sbjct: 113 VVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTQNLLLSQPD 172

Query: 181 CGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCH 240
           CGEQALSLVDTLIRSG            LVPKGELDGEMGDAHMAMQARLMSQALRKL H
Sbjct: 173 CGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 232

Query: 241 SLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEET 300
           SLSLSQ ILIFINQVRSKISTFGGFGGPTEVTCGGNALKFY+SVRLNIKRIG +KKGEE 
Sbjct: 233 SLSLSQSILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFIKKGEEV 292

Query: 301 LGSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRN 360
           +GS VLVKVVKNK APPFKTA+FEL+FGKGICR+AEII+LS+KYK I K+GS Y YN  N
Sbjct: 293 VGSQVLVKVVKNKLAPPFKTAEFELQFGKGICREAEIIKLSLKYKFITKAGSMYYYNEHN 352

Query: 361 YHGKDALKRFLADS-SSTEELATKLREKLLNGETDTAPEAQVTIGDVSEETVFPD-STDE 418
           + G DALK FLA++ S+ EEL  K+REKLL  ETD  PE+    GDV+EE    D STDE
Sbjct: 353 FRGVDALKSFLAENYSALEELEMKIREKLLKPETDKLPESD---GDVTEEIATLDSSTDE 409

Query: 419 EAAAVVEA 426
           EA AVVEA
Sbjct: 410 EAIAVVEA 417


>Medtr7g090880.1 | DNA repair protein RecA, putative | HC |
           chr7:35807573-35802538 | 20130731
          Length = 391

 Score =  301 bits (772), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 171/364 (46%), Positives = 235/364 (64%), Gaps = 7/364 (1%)

Query: 12  LLKRSFLHHNLPTRSCYEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEE-NMSKKDLALQ 70
           LL  SFL+   P+R    + ++    V + S       S  + DE  ++   ++K+ AL 
Sbjct: 14  LLSSSFLY---PSRKNGFREIMTRIGVNTCSLSTTAEASDLECDEIHDDVKAAEKNNALC 70

Query: 71  QALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGPEAS 130
            A+ Q+ S F K S++ L +    +   VVSTGS  LDIALGIGGLPKGR+VEI+G EA+
Sbjct: 71  LAVSQLASEFSKESMLSLQKFFRVRYANVVSTGSLKLDIALGIGGLPKGRIVEIYGREAA 130

Query: 131 GKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVD 190
           GKTTLAL +I EAQKLGGYCA++D E ALD +L ES+GVNTKNLL+S PDC E  LS+VD
Sbjct: 131 GKTTLALQIIKEAQKLGGYCAYLDVESALDLSLVESMGVNTKNLLISNPDCAENLLSMVD 190

Query: 191 TLIRSGXXXXXXXXXXXXLVPKGELDGEMGDA-HMAMQARLMSQALRKLCHSLSLSQCIL 249
           TL +SG            LVPK ELD ++G A    + +R+M+QALRK+ +SLS SQ +L
Sbjct: 191 TLTKSGAVDVIVVDSVAALVPKCELD-QLGVATSQDLHSRIMTQALRKIHYSLSRSQTLL 249

Query: 250 IFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETLGSHVLVKV 309
           IF+NQVR     FGG G   EVTCGGNAL+FY++VRL + R+GL+K  ++  G  V  +V
Sbjct: 250 IFVNQVRFSPKAFGGRGPMEEVTCGGNALRFYAAVRLRLSRMGLIKTEDKVEGITVCAQV 309

Query: 310 VKNKHAP-PFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNYHGKDALK 368
           VKNK AP   K A+  ++FG+G C+++E+  L+ ++ LI K    Y   G  +  ++A +
Sbjct: 310 VKNKLAPAAMKKAELGIKFGRGFCQESEVFALACEHGLIMKDEGNYFIEGEPFTSREAAE 369

Query: 369 RFLA 372
           +FLA
Sbjct: 370 QFLA 373


>Medtr8g461220.1 | DNA repair and recombination protein | HC |
           chr8:21510596-21499546 | 20130731
          Length = 418

 Score =  270 bits (690), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/353 (43%), Positives = 218/353 (61%), Gaps = 13/353 (3%)

Query: 68  ALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGP 127
           AL+ A++ I S+FGKGS+  LG S     V    +G  ALD ALG GGLPKGR+VEIFGP
Sbjct: 70  ALEAAMNDINSSFGKGSVTRLG-SAGGALVETFPSGCLALDFALG-GGLPKGRIVEIFGP 127

Query: 128 EASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALS 187
           E+SGKTTLALH I+E QKLGG    VDAEHA D   ++++GV+ +NL++ QPD GE AL 
Sbjct: 128 ESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKAVGVDVENLIVCQPDHGEMALE 187

Query: 188 LVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQC 247
           + D + RSG            L P+ E++GE+G   M +QARLMSQALRK+  + S + C
Sbjct: 188 IADRMCRSGAIDLICVDSVSALTPRAEVEGEIGMQQMGLQARLMSQALRKMSGNASKAGC 247

Query: 248 ILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVK--KGEETLGSHV 305
            LIF+NQ+R KI  +  +G P EVT GG ALKF++SVRL I+ IG +K  KG+E +G  V
Sbjct: 248 TLIFLNQIRYKIGVY--YGNP-EVTSGGIALKFFASVRLEIRSIGKIKSAKGDEEVGLKV 304

Query: 306 LVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEY-NGRNYHGK 364
            V+V K+K + P+K A+F++ FG+G+ +   I++ +    ++ K GS+Y Y + R   G+
Sbjct: 305 RVRVQKSKVSRPYKVAEFDISFGEGVNKLGCILDCAEMMNIVLKKGSWYSYGDHRLGQGR 364

Query: 365 DALKRFLADSSSTEELATKLREKLLNGETDTAPEAQVTIGDVSEETVFPDSTD 417
           +   ++L +++   E   K+    +N  T+     Q T        + P   D
Sbjct: 365 EKTLQYLKENTHLLEEVEKVVRSSMNDGTN-----QTTFSHTKNSPMLPQDED 412