Miyakogusa Predicted Gene

Lj6g3v1226320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1226320.1 Non Characterized Hit- tr|I3STA5|I3STA5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.51,0,coiled-coil,NULL; Utp11,Small-subunit processome, Utp11;
U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 1,CUFF.59271.1
         (203 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094380.1 | U3 small nucleolar RNA-associated protein, put...   325   2e-89
Medtr4g094380.2 | U3 small nucleolar RNA-associated protein, put...   237   6e-63

>Medtr4g094380.1 | U3 small nucleolar RNA-associated protein,
           putative | HC | chr4:37865132-37860451 | 20130731
          Length = 229

 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 154/203 (75%), Positives = 183/203 (90%)

Query: 1   MSSLRNALPRRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQ 60
           MSSLRNA+PR AHKER QPSSRKKFG LEKHKDYVERAKAFH KE+TLR+LREKAANRN+
Sbjct: 1   MSSLRNAVPRPAHKERPQPSSRKKFGILEKHKDYVERAKAFHVKEDTLRVLREKAANRNE 60

Query: 61  DEFYFKMIRTRTEDGVHRPESEANKYTQDELMLMKTQDLGYVLQKLQSERKKIEKLAASL 120
           DEFYFKM+ ++T DGVHRP +E NKYTQDEL+LMKTQD+GYVLQKLQSE+KK+EKL+A+L
Sbjct: 61  DEFYFKMVNSKTVDGVHRPVNEDNKYTQDELILMKTQDMGYVLQKLQSEKKKVEKLSANL 120

Query: 121 HSIDNQPTNKHILFAEDREEAKELQSQYSRSEIPLISDNIHTNIKRKIDRSYKELEARRT 180
           H ID++P NKH+ FAEDREEAKEL+ Q S+ ++P  SDNI  N+KRK +RSYKELEAR+ 
Sbjct: 121 HLIDHKPANKHVYFAEDREEAKELKQQLSKRKVPSTSDNIPDNLKRKTERSYKELEARKA 180

Query: 181 RLSQLQKMYMDMSMKKELQKNGR 203
           R+SQL+K+YMDM++KKELQKNGR
Sbjct: 181 RVSQLEKVYMDMALKKELQKNGR 203


>Medtr4g094380.2 | U3 small nucleolar RNA-associated protein,
           putative | HC | chr4:37865128-37860462 | 20130731
          Length = 168

 Score =  237 bits (604), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 111/140 (79%), Positives = 128/140 (91%)

Query: 1   MSSLRNALPRRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQ 60
           MSSLRNA+PR AHKER QPSSRKKFG LEKHKDYVERAKAFH KE+TLR+LREKAANRN+
Sbjct: 1   MSSLRNAVPRPAHKERPQPSSRKKFGILEKHKDYVERAKAFHVKEDTLRVLREKAANRNE 60

Query: 61  DEFYFKMIRTRTEDGVHRPESEANKYTQDELMLMKTQDLGYVLQKLQSERKKIEKLAASL 120
           DEFYFKM+ ++T DGVHRP +E NKYTQDEL+LMKTQD+GYVLQKLQSE+KK+EKL+A+L
Sbjct: 61  DEFYFKMVNSKTVDGVHRPVNEDNKYTQDELILMKTQDMGYVLQKLQSEKKKVEKLSANL 120

Query: 121 HSIDNQPTNKHILFAEDREE 140
           H ID++P NKH+ FAEDR E
Sbjct: 121 HLIDHKPANKHVYFAEDRFE 140