Miyakogusa Predicted Gene

Lj6g3v1211750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1211750.1 tr|Q56YV7|Q56YV7_ARATH Ribosomal protein L18ae
family protein OS=Arabidopsis thaliana GN=At1g54217
P,62.37,4e-19,seg,NULL,CUFF.59250.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g125770.3 | ribosomal protein L18ae family protein | HC | ...   179   8e-46
Medtr4g125770.1 | ribosomal protein L18ae family protein | HC | ...   179   8e-46
Medtr4g125770.2 | ribosomal protein L18ae family protein | HC | ...   179   8e-46
Medtr4g125770.4 | ribosomal protein L18ae family protein | HC | ...   143   4e-35
Medtr8g018810.1 | ribosomal protein L18ae family protein, putati...   110   3e-25

>Medtr4g125770.3 | ribosomal protein L18ae family protein | HC |
           chr4:52204012-52198828 | 20130731
          Length = 147

 Score =  179 bits (453), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 100/139 (71%), Gaps = 2/139 (1%)

Query: 1   MDKGASMEETADLRNGVELTRPVSDKHLDLLRPSARNYSVFR--DATDNDKGKYALIRDP 58
           MDK   +EE  DLR GVE  R +S K+ DLLRP AR+ S  +  D   + KGKYAL+RDP
Sbjct: 1   MDKDGRVEENVDLRKGVESARSISVKNFDLLRPFARSNSRGQAGDPMAHGKGKYALVRDP 60

Query: 59  EDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERXXXXXXX 118
           EDFQ+GLYDKPLPCFGCG+GWFSFL GF+CPP+W+YATILYFGN+YRKDPRER       
Sbjct: 61  EDFQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 119 XXXXXCSVALLITGVILLF 137
                CSV +LI   ILL 
Sbjct: 121 IAALVCSVGMLIFAAILLL 139


>Medtr4g125770.1 | ribosomal protein L18ae family protein | HC |
           chr4:52203886-52198941 | 20130731
          Length = 147

 Score =  179 bits (453), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 100/139 (71%), Gaps = 2/139 (1%)

Query: 1   MDKGASMEETADLRNGVELTRPVSDKHLDLLRPSARNYSVFR--DATDNDKGKYALIRDP 58
           MDK   +EE  DLR GVE  R +S K+ DLLRP AR+ S  +  D   + KGKYAL+RDP
Sbjct: 1   MDKDGRVEENVDLRKGVESARSISVKNFDLLRPFARSNSRGQAGDPMAHGKGKYALVRDP 60

Query: 59  EDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERXXXXXXX 118
           EDFQ+GLYDKPLPCFGCG+GWFSFL GF+CPP+W+YATILYFGN+YRKDPRER       
Sbjct: 61  EDFQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 119 XXXXXCSVALLITGVILLF 137
                CSV +LI   ILL 
Sbjct: 121 IAALVCSVGMLIFAAILLL 139


>Medtr4g125770.2 | ribosomal protein L18ae family protein | HC |
           chr4:52203886-52198941 | 20130731
          Length = 144

 Score =  179 bits (453), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 99/137 (72%), Gaps = 1/137 (0%)

Query: 1   MDKGASMEETADLRNGVELTRPVSDKHLDLLRPSARNYSVFRDATDNDKGKYALIRDPED 60
           MDK   +EE  DLR GVE  R +S K+ DLLRP AR+ S   D   + KGKYAL+RDPED
Sbjct: 1   MDKDGRVEENVDLRKGVESARSISVKNFDLLRPFARSNSR-GDPMAHGKGKYALVRDPED 59

Query: 61  FQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERXXXXXXXXX 120
           FQ+GLYDKPLPCFGCG+GWFSFL GF+CPP+W+YATILYFGN+YRKDPRER         
Sbjct: 60  FQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILYFGNHYRKDPRERAGLGASAIA 119

Query: 121 XXXCSVALLITGVILLF 137
              CSV +LI   ILL 
Sbjct: 120 ALVCSVGMLIFAAILLL 136


>Medtr4g125770.4 | ribosomal protein L18ae family protein | HC |
           chr4:52204012-52198941 | 20130731
          Length = 110

 Score =  143 bits (361), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 73/94 (77%)

Query: 43  DATDNDKGKYALIRDPEDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGN 102
           D   + KGKYAL+RDPEDFQ+GLYDKPLPCFGCG+GWFSFL GF+CPP+W+YATILYFGN
Sbjct: 8   DPMAHGKGKYALVRDPEDFQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILYFGN 67

Query: 103 YYRKDPRERXXXXXXXXXXXXCSVALLITGVILL 136
           +YRKDPRER            CSV +LI   ILL
Sbjct: 68  HYRKDPRERAGLGASAIAALVCSVGMLIFAAILL 101


>Medtr8g018810.1 | ribosomal protein L18ae family protein, putative
           | HC | chr8:6509862-6506637 | 20130731
          Length = 96

 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 61/93 (65%)

Query: 44  ATDNDKGKYALIRDPEDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNY 103
             D  KG YA I DPE    G +DKPLPCFGCG+GWFSFL GF CP  WYYATILYFGNY
Sbjct: 3   TADGIKGDYAPILDPEHPPLGKFDKPLPCFGCGIGWFSFLLGFACPLTWYYATILYFGNY 62

Query: 104 YRKDPRERXXXXXXXXXXXXCSVALLITGVILL 136
           Y KDPRER            C++ ++IT +++ 
Sbjct: 63  YHKDPRERAGLAASAIAALICTITVVITILVIF 95