Miyakogusa Predicted Gene

Lj6g3v1201450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1201450.1 Non Characterized Hit- tr|I3SFU1|I3SFU1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,96.06,0,Snf7,Snf7; CHARGED MULTIVESICULAR BODY PROTEIN 2A
(CHROMATIN-MODIFYING PROTEIN 2A)(CHMP2A)(VACUOLAR ,CUFF.59247.1
         (223 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g041190.1 | charged multivesicular body protein | HC | chr...   297   6e-81
Medtr8g019700.1 | charged multivesicular body protein | HC | chr...   252   2e-67
Medtr7g097170.1 | charged multivesicular body protein | HC | chr...   114   1e-25
Medtr1g069715.1 | cytochrome P450 family protein | LC | chr1:303...   108   3e-24
Medtr2g047875.1 | charged multivesicular body protein | HC | chr...   105   4e-23
Medtr4g057565.1 | vacuolar sorting-associated-like protein | HC ...    57   1e-08
Medtr2g100420.1 | charged multivesicular body protein | HC | chr...    49   5e-06

>Medtr2g041190.1 | charged multivesicular body protein | HC |
           chr2:18065645-18070228 | 20130731
          Length = 223

 Score =  297 bits (760), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 154/203 (75%), Positives = 163/203 (80%)

Query: 1   MLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLK 60
           MLDKSIREIERERQGLQ QEKKLI EIKKSAKQGQMGAVRVMAKDLVRTRHQ+EKFYKLK
Sbjct: 21  MLDKSIREIERERQGLQTQEKKLIAEIKKSAKQGQMGAVRVMAKDLVRTRHQIEKFYKLK 80

Query: 61  SQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTT 120
           SQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP+LQKIMQ+FERQNEKMELT 
Sbjct: 81  SQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPNLQKIMQDFERQNEKMELTM 140

Query: 121 EVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQELLNXXXXXXXXXXXXTKVPQVE 180
           EVM                    VNQVLDEIGI++NQEL+N            TKVPQ E
Sbjct: 141 EVMGDAIDDALEGDEEEEETDELVNQVLDEIGIDINQELVNAPSSAVAAPAAKTKVPQAE 200

Query: 181 TAATDDGGIDSDLQARPHNISRI 203
           TAATDD GIDSDLQAR  N+ ++
Sbjct: 201 TAATDDSGIDSDLQARLDNLRKM 223


>Medtr8g019700.1 | charged multivesicular body protein | HC |
           chr8:7006345-7009232 | 20130731
          Length = 224

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/204 (70%), Positives = 157/204 (76%), Gaps = 1/204 (0%)

Query: 1   MLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLK 60
           MLDKSIREIERERQGLQ+QEKKLI EIKK+AKQGQMGAVRVMAKDL+RTRHQ+EKFYKLK
Sbjct: 21  MLDKSIREIERERQGLQSQEKKLIGEIKKNAKQGQMGAVRVMAKDLIRTRHQIEKFYKLK 80

Query: 61  SQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTT 120
           SQLQGV+LRIQTLKSTQAMG+AMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEL +
Sbjct: 81  SQLQGVALRIQTLKSTQAMGDAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVS 140

Query: 121 EVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQELLN-XXXXXXXXXXXXTKVPQV 179
           EVM                    VNQVLDEIGI++N ELLN              ++ Q 
Sbjct: 141 EVMGDAIDDALEGDEEEEETEDLVNQVLDEIGIDINSELLNAPASTSAAAPAAKNRIAQA 200

Query: 180 ETAATDDGGIDSDLQARPHNISRI 203
           E    DDGGID DLQAR  N+ ++
Sbjct: 201 EPTGNDDGGIDDDLQARLDNLRKM 224


>Medtr7g097170.1 | charged multivesicular body protein | HC |
           chr7:39086171-39082366 | 20130731
          Length = 212

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 93/158 (58%)

Query: 2   LDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKS 61
           +  + R IERE   LQ +EKKL+ EIK++AK G  GA +V+A+ L+R R Q+      ++
Sbjct: 21  MTNATRGIEREIGSLQLEEKKLVAEIKRTAKTGNEGATKVLARQLIRLRQQIANLQGSRA 80

Query: 62  QLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTE 121
           Q++G++   Q + +  ++   MKG TKAM  MN+QM      K+MQEF++Q+ +M++TTE
Sbjct: 81  QMRGIATHTQAMHAHSSVAVGMKGATKAMAAMNKQMEPAKQAKVMQEFQKQSAQMDMTTE 140

Query: 122 VMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQEL 159
           +M                     NQVLDEIGI++  +L
Sbjct: 141 MMSDVIDDALDDDEAEEETEELTNQVLDEIGIDIASQL 178


>Medtr1g069715.1 | cytochrome P450 family protein | LC |
           chr1:30367208-30373894 | 20130731
          Length = 677

 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 91/155 (58%)

Query: 5   SIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQ 64
           + R IE+E   LQ +EKKL+ EIKK+AK G   A +++A+ LVR R Q+      ++Q++
Sbjct: 489 ATRGIEKEIGALQLEEKKLVAEIKKTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMR 548

Query: 65  GVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTEVMX 124
           G++   Q L +  ++   MKG +KAM  MN+QM      KI+QEF++Q+ +M++TTE+M 
Sbjct: 549 GIATHTQALYAQSSISAGMKGASKAMEAMNKQMAPTKQAKIIQEFQKQSAQMDITTEMMA 608

Query: 125 XXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQEL 159
                               NQVLDEIG++V  +L
Sbjct: 609 DAIDDVLDNDEAEDETEDLTNQVLDEIGVDVASQL 643


>Medtr2g047875.1 | charged multivesicular body protein | HC |
           chr2:20962877-20956118 | 20130731
          Length = 216

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 90/155 (58%)

Query: 5   SIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQ 64
           + R IERE   LQ +EKKL+ EIK+ AK G   + +++A+ LVR R Q+      ++Q++
Sbjct: 24  ATRGIEREIASLQMEEKKLVAEIKREAKTGNEASTKILARQLVRLRQQITNLQGSRAQIR 83

Query: 65  GVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTEVMX 124
           GV+   Q L ++ ++   MKG TKAM  MN+QM      K++QEF++Q+ ++++T E+M 
Sbjct: 84  GVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAKQAKVIQEFQKQSAQLDMTIEMMS 143

Query: 125 XXXXXXXXXXXXXXXXXXXVNQVLDEIGINVNQEL 159
                               NQVLDEIG+++  +L
Sbjct: 144 ESIDETLDKDEAEEESEELTNQVLDEIGVDIASQL 178


>Medtr4g057565.1 | vacuolar sorting-associated-like protein | HC |
           chr4:21106196-21110863 | 20130731
          Length = 227

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 2   LDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKS 61
           L +  R IER+ + +Q +EK +   IK++AK+  +G+ + +A +LVR+R  V + Y+ K+
Sbjct: 25  LRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDIGSAKALATELVRSRKTVNRLYENKA 84

Query: 62  QLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTT 120
           QL  +S+ + +++   + +G   K   + M  +N  M  P +   MQEF ++  K  +  
Sbjct: 85  QLNSISMHLGESVAIARTVGHLSKS-AEVMKLVNNLMKAPEMAVAMQEFSKEMTKAGVIE 143

Query: 121 EVM 123
           E++
Sbjct: 144 EIV 146


>Medtr2g100420.1 | charged multivesicular body protein | HC |
           chr2:43153549-43152380 | 20130731
          Length = 205

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%)

Query: 32  KQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMG 91
           ++G M   R+ A++ +R R +   + +L S+L  VS R+ T      + ++M  + K++ 
Sbjct: 44  EKGNMDGARIYAENAIRKRTEQMNYLRLSSRLDAVSARLDTQAKMSTISKSMGNIVKSLE 103

Query: 92  QMNRQMNLPSLQKIMQEFERQNEKMELTTEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEI 151
                 NL  + + M +FE+Q   ME+  E M                    + QV D+ 
Sbjct: 104 SSLATGNLQKMSETMDQFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDY 163

Query: 152 GINVNQEL 159
           G+ V+  L
Sbjct: 164 GLEVSVNL 171