Miyakogusa Predicted Gene
- Lj6g3v1201400.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1201400.1 tr|Q6WG36|Q6WG36_PEA RPA 70kDa subunit OS=Pisum
sativum PE=2 SV=1,81.35,0,REPLICATION FACTOR A 1, RFA1,NULL; Nucleic
acid-binding proteins,Nucleic acid-binding, OB-fold-like;,CUFF.59251.1
(625 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g041270.1 | replication protein A 70 kDa protein | HC | ch... 1055 0.0
Medtr3g047950.1 | replication factor A1 | HC | chr3:15999174-160... 792 0.0
Medtr4g109580.1 | replication protein A 70 kDa protein | HC | ch... 308 9e-84
Medtr4g109580.2 | replication protein A 70 kDa protein | HC | ch... 286 4e-77
Medtr4g109590.1 | replication factor-A carboxy-terminal domain p... 101 2e-21
Medtr8g062030.1 | replication factor-A carboxy-terminal domain p... 90 6e-18
Medtr8g479260.1 | replication factor-A carboxy-terminal domain p... 79 2e-14
Medtr2g008650.1 | replication factor-A carboxy-terminal domain p... 79 2e-14
Medtr5g027390.1 | replication factor-A-like protein | LC | chr5:... 79 2e-14
Medtr4g070090.1 | replication factor-A-like protein | HC | chr4:... 76 1e-13
Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 | 20... 75 2e-13
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p... 75 3e-13
Medtr4g036240.1 | replication factor-A carboxy-terminal domain p... 74 3e-13
Medtr1g105785.1 | replication factor-A carboxy-terminal domain p... 72 2e-12
Medtr1g075850.1 | replication factor-A carboxy-terminal domain p... 69 1e-11
Medtr5g026880.1 | replication factor-A protein 1, amine-terminal... 69 1e-11
Medtr6g039240.1 | animal RPA1 domain protein | LC | chr6:1418076... 69 1e-11
Medtr1g094230.1 | animal RPA1 domain protein | LC | chr1:4243647... 65 3e-10
Medtr8g463820.1 | animal RPA1 domain protein | LC | chr8:2251463... 65 3e-10
Medtr8g088810.1 | DUF223 domain protein | LC | chr8:36895897-368... 62 2e-09
Medtr1g052715.1 | DUF223 domain protein | LC | chr1:21677037-216... 61 4e-09
Medtr3g056270.1 | replication factor-A carboxy-terminal domain p... 57 7e-08
Medtr6g445520.1 | replication factor-A carboxy-terminal domain p... 56 9e-08
Medtr4g036240.2 | replication factor-A carboxy-terminal domain p... 54 4e-07
Medtr8g036090.1 | animal RPA1 domain protein | HC | chr8:1327908... 53 7e-07
Medtr4g471610.1 | animal RPA1 domain protein | HC | chr4:2707183... 53 7e-07
Medtr3g078440.1 | animal RPA1 domain protein | HC | chr3:3535014... 53 7e-07
Medtr8g096680.1 | animal RPA1 domain protein | HC | chr8:4055821... 53 1e-06
Medtr1g036740.1 | animal RPA1 domain protein | HC | chr1:1349734... 53 1e-06
Medtr2g062200.1 | DUF223 domain protein | LC | chr2:26248587-262... 53 1e-06
Medtr6g006000.1 | replication factor-A protein 1, amine-terminal... 52 1e-06
Medtr3g095950.1 | animal RPA1 domain protein | HC | chr3:4384560... 52 2e-06
Medtr3g116750.1 | animal RPA1 domain protein | HC | chr3:5461096... 52 2e-06
Medtr5g085220.1 | animal RPA1 domain protein | LC | chr5:3678902... 50 4e-06
Medtr1g072220.1 | DUF223 domain protein | LC | chr1:32050688-320... 50 6e-06
Medtr3g056240.1 | DUF223 domain protein | HC | chr3:22396065-223... 50 8e-06
>Medtr2g041270.1 | replication protein A 70 kDa protein | HC |
chr2:18105202-18100698 | 20130731
Length = 627
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/628 (82%), Positives = 573/628 (91%), Gaps = 4/628 (0%)
Query: 1 MSVNLTANAIPTIIGGDVNAKPLVQVLDVALVSGGNNSQQQQRYRVVLSDAVSSHQAMLA 60
M+VNLTANAI II GDV+AKPL+QVLD+A + NSQQQ RYR++LSDAVSSH AMLA
Sbjct: 1 MAVNLTANAITAIIAGDVDAKPLLQVLDIATIVSTKNSQQQ-RYRLLLSDAVSSHHAMLA 59
Query: 61 AQLNDHVRNGRVKKGSVVQLIDYICSTLQNRKIIVVLNMETIILDCEIIGNPKSFMNSDL 120
AQLND V GRVK+GS+VQL+DYIC+ LQNRKII+VLNMETII DCEIIGNPKSF++S+L
Sbjct: 60 AQLNDRVNTGRVKQGSIVQLLDYICTPLQNRKIIMVLNMETIIPDCEIIGNPKSFVDSEL 119
Query: 121 PILRNAAENLPRSSG---NNLAAKNASHNVQNFRPTVQPAYQPPPVYKGRGAIVKNEAPA 177
P+ + +N S NNLAA+NA N QNFRPTVQP YQPPP+YKGRGA++KNEAPA
Sbjct: 120 PVQKALPDNTVAGSSRSINNLAAQNAGSNGQNFRPTVQPPYQPPPLYKGRGAVMKNEAPA 179
Query: 178 RVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSV 237
RVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN+V
Sbjct: 180 RVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 239
Query: 238 VDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQF 297
VDRFY++IE GKVYLIS+GSLKPAQKNFNHLKNEWEI LD NST+ELCPDEDGSIPRQQF
Sbjct: 240 VDRFYEAIEVGKVYLISKGSLKPAQKNFNHLKNEWEIMLDLNSTIELCPDEDGSIPRQQF 299
Query: 298 SFRPISDIENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLW 357
SFRPISDIE ++N+ILDVIGVVTSVNPSVPILRKNGMET RRVLNLKD+SG+SVELTLW
Sbjct: 300 SFRPISDIEIVENNAILDVIGVVTSVNPSVPILRKNGMETLRRVLNLKDNSGKSVELTLW 359
Query: 358 GEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSISTTQLFINPDFPEAHSLRD 417
GEFCNREGQ+LQEMVDAGVFP+LAVKAGKV++FSGKSIGSISTTQLFINPDFPEA +LR+
Sbjct: 360 GEFCNREGQKLQEMVDAGVFPVLAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQTLRN 419
Query: 418 WFDQVGKDSASLSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFMKTD 477
WFDQVGKDSASLSISKD GGPKNEIRKTVSQIKDEGLGRS KPDWIT+RAT+SFM+TD
Sbjct: 420 WFDQVGKDSASLSISKDITHGGPKNEIRKTVSQIKDEGLGRSGKPDWITMRATVSFMRTD 479
Query: 478 TFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVT 537
FCYTACPLMIGDR C+KKVT+SG+ WQCDRCNQEFEECDYRYLLQAQI DH+GLTWVT
Sbjct: 480 PFCYTACPLMIGDRPCNKKVTKSGDTKWQCDRCNQEFEECDYRYLLQAQIQDHSGLTWVT 539
Query: 538 AFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFKLKIKEELYGDEQKVK 597
AFQEAGEEIMG AK+LY LK E++DD++FG+IIKS+LFN FVF+LKIKEELY +EQKVK
Sbjct: 540 AFQEAGEEIMGYPAKDLYVLKYEQEDDEKFGDIIKSRLFNEFVFRLKIKEELYNEEQKVK 599
Query: 598 ITVVKADQVNYSSESRYMLDLISKFCRQ 625
ITVVKAD+VNYS+ESRYMLD ISKF RQ
Sbjct: 600 ITVVKADKVNYSAESRYMLDFISKFRRQ 627
>Medtr3g047950.1 | replication factor A1 | HC |
chr3:15999174-16004293 | 20130731
Length = 824
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/634 (62%), Positives = 479/634 (75%), Gaps = 64/634 (10%)
Query: 1 MSVNLTANAIPTIIGGDVNAKPLVQVLDVALVSGGNNSQQQQRYRVVLSDAVSSHQAMLA 60
MS+ LT NAIP I GDV+AKPLVQV+ + L+ ++S + +Y + LSD V SH A +A
Sbjct: 1 MSIKLTENAIPAITSGDVDAKPLVQVISITLLVDSDDSLLR-KYYLKLSDGVYSHSATIA 59
Query: 61 AQLNDHVRNGRVKKGSVVQLIDYICSTLQNRKIIVVLNMETIILDCEIIGNPKSFMNSDL 120
AQLND V GRVK+GS+V+L+DY+C T+ RKII+V METI+LD +IIGNPKSF++ +L
Sbjct: 60 AQLNDGVGTGRVKEGSIVKLLDYVCPTIVIRKIIIVHKMETIVLDSQIIGNPKSFVDPEL 119
Query: 121 PILRNAAENLPRSSGNNLAAKNASHNVQNFRPTVQPAYQPPPVYKGRGAIVKNEAPARVI 180
P+ V+NE P I
Sbjct: 120 PM------------------------------------------------VENEEP---I 128
Query: 181 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSVVDR 240
PIAAL+PY+G+WAIKARVT+KG LR YN+ G K FSFD+LDSDGGE++VTC N V+D
Sbjct: 129 PIAALHPYKGKWAIKARVTSKGHLRHYNSPEGYLKAFSFDVLDSDGGEVQVTCLNDVIDS 188
Query: 241 FYDSIEAGKVYLISRGSLKP-AQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
FY+ IE GKVYLIS+ L P K+ HLK +WEI L+SNSTVELCPDEDGSIP +FSF
Sbjct: 189 FYEVIEVGKVYLISKAGLIPVGSKDLKHLKIDWEIMLNSNSTVELCPDEDGSIPMHKFSF 248
Query: 300 RPISDIENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGE 359
R ISDIEN +SN+ILDVIGVVTSVN SV + R+N +E ++R+LNLKD+SGRSVELTLWGE
Sbjct: 249 RSISDIENIESNTILDVIGVVTSVNSSVLMSRENALEMRKRILNLKDNSGRSVELTLWGE 308
Query: 360 FCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSISTTQLFINPDFPEAHSLRDWF 419
CNREGQ L+++VDAG FP+LAVKAGKV +F GKSI +I ++LF+NPDFPEA SLR WF
Sbjct: 309 LCNREGQELKDIVDAGGFPVLAVKAGKVIEFRGKSINAIPISRLFVNPDFPEAQSLRLWF 368
Query: 420 DQVGKDSASLSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFMKTDTF 479
DQ GKDSAS SISKD GGPKNE+RKTVSQIKDEGLG +DKPDWIT RATISFMKTD F
Sbjct: 369 DQDGKDSASSSISKDISYGGPKNELRKTVSQIKDEGLGCTDKPDWITTRATISFMKTDVF 428
Query: 480 CYTACPLMIGDRQCSKKVTRSG-----------NMSWQCDRCNQEFEECDYRYLLQAQIL 528
CYTACP+MIGDR+C+KKVTRSG N W+CD CNQEF+ C+YRY+LQAQI+
Sbjct: 429 CYTACPVMIGDRRCNKKVTRSGERCSKKVTKTVNTRWKCDTCNQEFDVCEYRYILQAQIV 488
Query: 529 DHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFKLKIKEE 588
DHTGLT VTAF EAGE+IMG SAK+LY LK E++DD+RF +IIKS LFN FVF+LKI++E
Sbjct: 489 DHTGLTCVTAFNEAGEDIMGYSAKDLYVLKYEQEDDERFRDIIKSILFNQFVFRLKIQKE 548
Query: 589 LYGDEQKVKITVVKADQVNYSSESRYMLDLISKF 622
L G+EQKVKI VVKAD+VNYS+ES+YMLDLISKF
Sbjct: 549 LCGEEQKVKIIVVKADKVNYSAESKYMLDLISKF 582
>Medtr4g109580.1 | replication protein A 70 kDa protein | HC |
chr4:45544168-45547694 | 20130731
Length = 618
Score = 308 bits (790), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 197/650 (30%), Positives = 346/650 (53%), Gaps = 64/650 (9%)
Query: 1 MSVNLTANAIPTIIGGDVNAKP------LVQVLDVALVSGGNNSQQQQRYRVVLSDAVSS 54
M+ +++ NAI T++ +VQVLD L S GN RY SD
Sbjct: 1 MAKSVSPNAISTLLSNPSPDSSSDLPDIVVQVLD--LKSSGN------RYSFSASDGKKK 52
Query: 55 HQAMLAAQLNDHVRNGRVKKGSVVQLIDYICSTLQNR--KIIVVLNMETI--ILDCEIIG 110
+ ++ + V +G+++ +++++DY + + N+ K ++++ E + L+ EI
Sbjct: 53 LKGIIPSNQYSEVLSGKIQNLGLIRILDYTLNVIPNKSEKYLMLIKCEPVSPALETEIKS 112
Query: 111 NPKSFMNSDLPILRNAAENLPRSSGN----------NLAAKNASHNVQNFRPTVQPAYQP 160
L+ +++ + G+ ++ +K+A+ + PA
Sbjct: 113 EQSGI------TLKPKEDDVVKREGSTAGIVLKPKLDMVSKSAAQILHEQHANSAPA--- 163
Query: 161 PPVYKGRGAIVKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD 220
R A+ + RV P+ +LNPY G W IK VT+KG +R Y NARG+G VF+ +
Sbjct: 164 ------RLAMTR-----RVRPLVSLNPYMGGWTIKVSVTSKGTMRTYKNARGEGCVFNVE 212
Query: 221 LLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNS 280
L D DG +I+ T FN +FYD GKVY IS+GSLK A KNF + N++E+ L+ NS
Sbjct: 213 LTDEDGTQIQATMFNDAARKFYDKFAMGKVYYISKGSLKVANKNFKTVVNDYEMTLNENS 272
Query: 281 TVELCPDEDGSIPRQQFSFRPISDI-ENTDSNSILDVIGVVTSVNPSVPILRKNGMET-Q 338
VE +E +P +F+F PI + + + ++D++GVV +V+ ++ I RK+ ET
Sbjct: 273 EVEEVANEAAFVPETKFNFVPIDQLGPYVNKSELVDLVGVVKNVSSTMSIRRKSNNETVP 332
Query: 339 RRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSI 398
+R + + D + ++V ++LWG+ GQ L +M D P++A+K+ KV DF G S+ +I
Sbjct: 333 KRDITIADETKKTVVVSLWGDLATNIGQELLDMADKS--PVVAIKSLKVGDFQGISLSAI 390
Query: 399 STTQLFINPDFPEAHSLRDWFDQVGKDSASLSISKDFIPGGPKNEI-----RKTVSQIKD 453
S + + +NP+ PEA LR W+D GKD+A +IS I R +S I
Sbjct: 391 SRSLVLVNPEVPEAQKLRCWYDSEGKDAAMAAISSGSISSSNSGSRSVYSDRVPLSYITS 450
Query: 454 EGLGRSDKPDWITVRATISFMKTD-TFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQ 512
++KP + ++R ISF+K D Y AC + C+KKVT + + C+ C +
Sbjct: 451 NLSLGAEKPAFFSIRGNISFIKADQAMWYRAC------KTCNKKVTEDMDAGYWCESCQK 504
Query: 513 EFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIK 572
EC++RY++ A++ D +G +V+ F E E+I+GC A+EL LK+++ +++ + +K
Sbjct: 505 NDAECNFRYIMVAKVSDASGEAFVSTFNEEAEKIIGCPAEELDNLKSQDGEENPYDMKLK 564
Query: 573 SKLFNHFVFKLKIKEELYGDEQKVKITVVKADQVNYSSESRYMLDLISKF 622
+ + ++ + + Y E++ +IT +++++ES+++L+ ISK
Sbjct: 565 KATWIPHLLRVSVSQNEYNGEKRQRITARAVVPIDFAAESKFLLEDISKM 614
>Medtr4g109580.2 | replication protein A 70 kDa protein | HC |
chr4:45544168-45547694 | 20130731
Length = 560
Score = 286 bits (732), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 186/588 (31%), Positives = 311/588 (52%), Gaps = 64/588 (10%)
Query: 1 MSVNLTANAIPTIIGGDVNAKP------LVQVLDVALVSGGNNSQQQQRYRVVLSDAVSS 54
M+ +++ NAI T++ +VQVLD L S GN RY SD
Sbjct: 1 MAKSVSPNAISTLLSNPSPDSSSDLPDIVVQVLD--LKSSGN------RYSFSASDGKKK 52
Query: 55 HQAMLAAQLNDHVRNGRVKKGSVVQLIDYICSTLQNR--KIIVVLNMETI--ILDCEIIG 110
+ ++ + V +G+++ +++++DY + + N+ K ++++ E + L+ EI
Sbjct: 53 LKGIIPSNQYSEVLSGKIQNLGLIRILDYTLNVIPNKSEKYLMLIKCEPVSPALETEIKS 112
Query: 111 NPKSFMNSDLPILRNAAENLPRSSGN----------NLAAKNASHNVQNFRPTVQPAYQP 160
L+ +++ + G+ ++ +K+A+ + PA
Sbjct: 113 EQSGI------TLKPKEDDVVKREGSTAGIVLKPKLDMVSKSAAQILHEQHANSAPA--- 163
Query: 161 PPVYKGRGAIVKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD 220
R A+ + RV P+ +LNPY G W IK VT+KG +R Y NARG+G VF+ +
Sbjct: 164 ------RLAMTR-----RVRPLVSLNPYMGGWTIKVSVTSKGTMRTYKNARGEGCVFNVE 212
Query: 221 LLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNS 280
L D DG +I+ T FN +FYD GKVY IS+GSLK A KNF + N++E+ L+ NS
Sbjct: 213 LTDEDGTQIQATMFNDAARKFYDKFAMGKVYYISKGSLKVANKNFKTVVNDYEMTLNENS 272
Query: 281 TVELCPDEDGSIPRQQFSFRPISDI-ENTDSNSILDVIGVVTSVNPSVPILRKNGMET-Q 338
VE +E +P +F+F PI + + + ++D++GVV +V+ ++ I RK+ ET
Sbjct: 273 EVEEVANEAAFVPETKFNFVPIDQLGPYVNKSELVDLVGVVKNVSSTMSIRRKSNNETVP 332
Query: 339 RRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSI 398
+R + + D + ++V ++LWG+ GQ L +M D P++A+K+ KV DF G S+ +I
Sbjct: 333 KRDITIADETKKTVVVSLWGDLATNIGQELLDMADKS--PVVAIKSLKVGDFQGISLSAI 390
Query: 399 STTQLFINPDFPEAHSLRDWFDQVGKDSASLSISKDFIPGGPKNEI-----RKTVSQIKD 453
S + + +NP+ PEA LR W+D GKD+A +IS I R +S I
Sbjct: 391 SRSLVLVNPEVPEAQKLRCWYDSEGKDAAMAAISSGSISSSNSGSRSVYSDRVPLSYITS 450
Query: 454 EGLGRSDKPDWITVRATISFMKTD-TFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQ 512
++KP + ++R ISF+K D Y AC + C+KKVT + + C+ C +
Sbjct: 451 NLSLGAEKPAFFSIRGNISFIKADQAMWYRAC------KTCNKKVTEDMDAGYWCESCQK 504
Query: 513 EFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNE 560
EC++RY++ A++ D +G +V+ F E E+I+GC A+EL LK++
Sbjct: 505 NDAECNFRYIMVAKVSDASGEAFVSTFNEEAEKIIGCPAEELDNLKSQ 552
>Medtr4g109590.1 | replication factor-A carboxy-terminal domain
protein | HC | chr4:45550465-45552007 | 20130731
Length = 267
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 134/279 (48%), Gaps = 42/279 (15%)
Query: 350 RSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSISTTQLFINPDF 409
++V +TLWG+ G L E+ D P++A+K+ KV DF G S+ ++ + + INPD
Sbjct: 18 KTVVVTLWGDLATNIGNELLEIADKS--PVVAIKSVKVWDFGGVSLSAMHRSLVMINPDV 75
Query: 410 PEAHSLRD---------WFDQVGKDSASLSISKDFIPGGPKNEIRKTVSQIKDEGLGRSD 460
PEA LR +D GKD+A +++ IP + S I+ +
Sbjct: 76 PEARKLRSSEAGIPLSPRYDSEGKDAAMVALRSGSIPS--------SNSGIRSFLFLYFE 127
Query: 461 KPDWITVRATISFMKTDT-FCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDY 519
+P + ++R ISF++ D Y AC + C+KK+T E
Sbjct: 128 QPAFFSIRGYISFIRPDQEMWYCAC------KTCNKKLT----------------ESMGD 165
Query: 520 RYLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHF 579
Y + ++ D + +++ F E E+I+GCSA EL L+++E +++ + +K +
Sbjct: 166 GYSMIVRVSDASSEAYISIFNEEAEKIIGCSADELNDLRSQEGEENPYLMKLKKATWIPH 225
Query: 580 VFKLKIKEELYGDEQKVKITVVKADQVNYSSESRYMLDL 618
+ ++ + + +E++ KIT V V+ ++ + L +
Sbjct: 226 LLRVSVSQNENNNEKRQKITAVAVVPVDLAANLNFSLKI 264
>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:25901653-25904109 | 20130731
Length = 575
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 165/364 (45%), Gaps = 45/364 (12%)
Query: 187 PYQGRWAIKARVTAKGDLRRY---NNARGDGKVFSFDLLDSDGGEIRVTCFNSVVDRFYD 243
P + W I+ RV ++ + N A LLD G +I+ ++ F
Sbjct: 13 PGRLNWRIRVRVVRMWEVPTFLKPNQANS----LEMVLLDQMGVKIQAIVRKQLIYVFQK 68
Query: 244 SIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFRPIS 303
+ G+VY IS S+ P+ ++ + ++I + V+ C +IP SF I
Sbjct: 69 RLREGEVYNISYFSVAPSTGSYRAATHPYKIVFQMTTKVQSC--TSATIPLYGLSFTSIV 126
Query: 304 DIEN--TDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEFC 361
D+ N + + ++DV+G+VT+V+ +R +G T+ + + D SG+ +E L+GE+
Sbjct: 127 DVSNHTVEYDYLVDVMGLVTAVSEEREYVR-DGSVTKMIIFEVTDHSGK-IECALFGEYV 184
Query: 362 NREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSI--GSISTTQLFINPDFPEAHSLRDWF 419
+ + + P++ V+ KV F K+ TT+L +NPD PE + +D
Sbjct: 185 ALWNGFVSKGFEG--LPVVVVQFAKVKIFRDKATLQNVKGTTRLIVNPDVPEVIAFKDRL 242
Query: 420 DQVG----------KDSASLSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRA 469
+G + S+ ++F+ PK KT+SQ L S++ + V A
Sbjct: 243 IGLGIQVPPTLTVLGGPSKPSMEEEFLRMYPK----KTISQ-----LFNSEEDGFFVVSA 293
Query: 470 TIS-FMKTDTFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQIL 528
+S F++ + + Y AC +C + VT ++ C C++ + RY ++ ++
Sbjct: 294 IVSGFVEGEEWWYPAC-------KCHRSVTADSG-AYYCKGCDKHVIQMVPRYKIKLRVD 345
Query: 529 DHTG 532
D TG
Sbjct: 346 DGTG 349
>Medtr8g479260.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:33777150-33779789 | 20130731
Length = 555
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/415 (20%), Positives = 175/415 (42%), Gaps = 48/415 (11%)
Query: 192 WAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVDRFYDSIEAGK 249
W +K ++ + +N G+ FS ++ LD G I + +++ +F + + GK
Sbjct: 20 WNLKGKIIRLWQVSDFN---GNRMPFSIEMVILDEAGDRIHASLKKTLIYKFRNDLFEGK 76
Query: 250 VYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFRPISDI--EN 307
+ + + K+ +++ +S V+ P +I + + PIS++
Sbjct: 77 CFSFENMGVANNGGGYRTTKHTYKLNFQLSSKVKYLPAL--TITKSPYQLVPISEVIGGT 134
Query: 308 TDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEFCNREGQR 367
D++ ++D+IGV+T V S L +NG T+ V+ L ++ G ++ TL+G + +
Sbjct: 135 YDTDYLVDIIGVLTGVG-SERELERNGNMTKLNVIEL-EAGGFKIQCTLFGSYVDD---- 188
Query: 368 LQEMVDAGVFP--ILAVKAGKVSDFSGK--SIGSISTTQLFINPDFPEAHSLRDWFDQVG 423
L + +G P I+ ++ K F K I T++ P A S+R+ +
Sbjct: 189 LNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCIGCTKVIFKPTCDAAVSMRNRLSETV 248
Query: 424 KDSASLSISK-----------DFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATIS 472
+ L +++ +F+ G P+N + +GL + + V TI
Sbjct: 249 DTPSPLGLTQLQPEAKLDPREEFLYGTPRNTM---------QGLKDATTNEVYVVLGTIK 299
Query: 473 -FMKTDTFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILDHT 531
+ + F YTAC CSK V M + C++C++ ++ RY L+ + +DHT
Sbjct: 300 RIVNRENFWYTACI-------CSKAVIPDSQMFY-CEKCDRHVKKVFSRYCLRVRAIDHT 351
Query: 532 GLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFKLKIK 586
+ F + + S ++ + I + F+FK++ K
Sbjct: 352 DCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKVETK 406
>Medtr2g008650.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:1569207-1566568 | 20130731
Length = 555
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/415 (20%), Positives = 175/415 (42%), Gaps = 48/415 (11%)
Query: 192 WAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVDRFYDSIEAGK 249
W +K ++ + +N G+ FS ++ LD G I + +++ +F + + GK
Sbjct: 20 WNLKGKIIRLWQVSDFN---GNRMPFSIEMVILDEAGDRIHASLKKTLIYKFRNDLFEGK 76
Query: 250 VYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFRPISDI--EN 307
+ + + K+ +++ +S V+ P +I + + PIS++
Sbjct: 77 CFSFENMGVANNGGGYRTTKHTYKLNFQFSSKVKYLPAL--TITKSPYQLVPISEVIGGT 134
Query: 308 TDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEFCNREGQR 367
D++ ++D+IGV+T V S L +NG T+ V+ L ++ G ++ TL+G + +
Sbjct: 135 YDTDYLVDIIGVLTGVG-SERELERNGNMTKLNVIEL-EAGGFKIQCTLFGSYVDD---- 188
Query: 368 LQEMVDAGVFP--ILAVKAGKVSDFSGK--SIGSISTTQLFINPDFPEAHSLRDWFDQVG 423
L + +G P I+ ++ K F K I T++ P A S+R+ +
Sbjct: 189 LNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCIGCTKVIFKPTCDAAVSMRNRLSETV 248
Query: 424 KDSASLSISK-----------DFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATIS 472
+ L +++ +F+ G P+N + +GL + + V TI
Sbjct: 249 DTPSPLGLTQLQPEAKLDPREEFLYGTPRNTM---------QGLKDATTNEVYVVLGTIK 299
Query: 473 -FMKTDTFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILDHT 531
+ + F YTAC CSK V M + C++C++ ++ RY L+ + +DHT
Sbjct: 300 RIVNRENFWYTACI-------CSKAVIPDSQMFY-CEKCDRHVKKVFSRYCLRVRAIDHT 351
Query: 532 GLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFKLKIK 586
+ F + + S ++ + I + F+FK++ K
Sbjct: 352 DCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKVETK 406
>Medtr5g027390.1 | replication factor-A-like protein | LC |
chr5:11382204-11385197 | 20130731
Length = 477
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 173/400 (43%), Gaps = 46/400 (11%)
Query: 204 LRRYNNARGDGKVFSFDLLDSDGGEIRVT-CFNSVVDRFYDS-----IEAGKVYLISRGS 257
L + +NA D K+ ++RV C ++ + R + ++ GK+Y+IS
Sbjct: 23 LNKLSNAAPDTKI-----------KVRVANCIHATIPRRFSPSLKKVLQEGKIYVISHYE 71
Query: 258 LKPAQKNFNHLKNEWEIF-LDSNSTVELCPDEDGSIPRQQFSFRPISD-IENTDSNSILD 315
+ ++ + ++N + ++ V +D +IPR F F +D I+ + D
Sbjct: 72 VSKNKEKYAVVENNPSMLSFYGDAIVTEEGSDDNTIPRYIFEFVNFNDLIKRCGKEVLAD 131
Query: 316 VIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAG 375
VIG + V+P NG + L+L D SG +++TLW ++ Q+L + + A
Sbjct: 132 VIGFIIDVDPIEEKTTVNG-KVDMLSLHLGDGSGNVLKVTLWDDYAPMFNQKLIDQMHAT 190
Query: 376 VFPILAV-KAGKVSDFSGKS---IGSISTTQLFINPDFPEAHSL---RDWFDQVGKDSAS 428
P +A+ + V + G + S +T ++IN D PE L + V K + +
Sbjct: 191 PKPNVAIFTSTLVKQYQGNCELYVSSSRSTTIYINIDTPEVADLILSSKGENSVLKTTET 250
Query: 429 LSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWI--TVRATISFMKTDTFCYTACPL 486
LS++ N KT+S++ + + D + V + + Y +CP
Sbjct: 251 LSLT---------NVDVKTISELLSMAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCP- 300
Query: 487 MIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEI 546
C K V+ S + C+ C ++ + RY L+ Q+ D T T F E E++
Sbjct: 301 -----HCRKTVS-STETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTIFVLFAEVAEQL 354
Query: 547 MGCSAKELY-FLKNEEQDDDRFGEIIKSKLFNHFVFKLKI 585
+L L+N+ D + ++ + + +F++K+
Sbjct: 355 AQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKL 394
>Medtr4g070090.1 | replication factor-A-like protein | HC |
chr4:26377794-26380276 | 20130731
Length = 502
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 161/370 (43%), Gaps = 34/370 (9%)
Query: 233 CFNSVVDRFYDS-----IEAGKVYLISRGSLKPAQKNFNHLKNEWEIF-LDSNSTVELCP 286
C ++ + R + ++ GK+Y+IS + ++ + ++N + ++ V
Sbjct: 74 CIHATIPRRFSPSLKKVLQEGKIYVISHFEVSKNKEKYAVVENNPSMLSFYGDAIVTEEG 133
Query: 287 DEDGSIPRQQFSFRPISD-IENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLK 345
+D +IPR F F +D I+ + DVIG + V+P NG + L+L
Sbjct: 134 SDDNTIPRYIFEFVNFNDLIKRCGKEVLADVIGFIIDVDPIEEKTTVNG-KVDMLSLHLG 192
Query: 346 DSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAV-KAGKVSDFSGKS---IGSISTT 401
D SG +++TLW ++ Q+L + + A P +A+ + V + G + S +T
Sbjct: 193 DGSGNVLKVTLWDDYAPMFNQKLIDQMHATPKPNVAIFTSTLVKQYQGNCELYVSSSRST 252
Query: 402 QLFINPDFPEAHSL---RDWFDQVGKDSASLSISKDFIPGGPKNEIRKTVSQIKDEGLGR 458
++IN D PE L + V K + +LS++ N KT+S++ +
Sbjct: 253 TIYINIDTPEVADLILSSKGKNSVLKTTETLSLT---------NVDVKTISELLSMAVSG 303
Query: 459 SDKPDWI--TVRATISFMKTDTFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEE 516
+ D + V + + Y +CP C K V+ S + C+ C ++ +
Sbjct: 304 VYQGDVVYNCVATVDDILLKNGLYYVSCP------HCRKTVS-STETDFNCEHCTKKVDY 356
Query: 517 CDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELY-FLKNEEQDDDRFGEIIKSKL 575
RY L+ Q+ D T T F E E++ +L L+N+ D + ++ +
Sbjct: 357 PKIRYRLELQVNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHII 416
Query: 576 FNHFVFKLKI 585
+ +F++K+
Sbjct: 417 GSKHIFQVKL 426
>Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 |
20130731
Length = 665
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 14/209 (6%)
Query: 221 LLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNS 280
L+D +G +I T ++ F + GKVY +S ++ + + +++ +
Sbjct: 42 LIDQNGVKIHATIPKQLMYLFQHKLIEGKVYKLSNFTVLLNSGAYRTTHHTYKLIFQMKT 101
Query: 281 TVELCPDEDGS-IPRQQFSFRPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMET 337
VE D + S IP + IS I D ++DVIG++T ++ +R +G T
Sbjct: 102 KVEESHDYEISLIPNHGLTLTDISQITSRTQDYEYLVDVIGLMTGISAEREFVR-DGKLT 160
Query: 338 QRRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGK-SIG 396
+ V+ L D SG+ E TL+G + + + + + V+ P++ ++ KV F GK SI
Sbjct: 161 KILVIELTDHSGK-CECTLFGNYVDELHKLMSKAVEGS--PVIVIQFAKVKIFRGKASIQ 217
Query: 397 SI--STTQLFINPDFPEAHSLRD----WF 419
++ STT++++NP FPEA ++ WF
Sbjct: 218 NVVGSTTRIYLNPSFPEALKFKEGKEVWF 246
>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:33436158-33438920 | 20130731
Length = 517
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 146/333 (43%), Gaps = 37/333 (11%)
Query: 221 LLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNS 280
L+D G +I + + F + GKVY +S S+ P+ ++ + ++I +
Sbjct: 46 LIDEMGTKIHASVRKQLFYVFQSKLSEGKVYEMSCFSVAPSVGSYRTTLHPYKIVFQMTT 105
Query: 281 TVELCPDEDGSIPRQQFSFRPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQ 338
V+ C E SIP S I+D+ +D + ++DV+G +T ++ +R +G T+
Sbjct: 106 KVQAC--EGASIPSLGISLCKIADVCQHTSDHDYLVDVLGFMTGISVEREYVR-DGKVTK 162
Query: 339 RRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSI--G 396
+ + D+SG+ E L+G++ + + + + G PI+ V+ KV F K+
Sbjct: 163 MVIFEITDASGK-CECALFGQYVDTLNKLMGK--SGGGMPIILVQFAKVKIFRDKASLQN 219
Query: 397 SISTTQLFINPDFPEAHSLRDWFDQVGKDSAS---------LSISKDFIPGGPKNEIRKT 447
++TT++ INP +A +R D +S +S+ +DF+ PK + +
Sbjct: 220 VMNTTRILINPPIEQADQIRKSVTFGSMDVSSVPRIGARSKVSLEEDFLRTFPKKTLEQL 279
Query: 448 VSQIKDEGLGRSDKPDWITVRATI-SFMKTDTFCYTACPLMIGDRQCSKKVTRSGNMSWQ 506
S +D V ATI + + + Y AC +C + V+ ++
Sbjct: 280 HSTFED---------GVFVVYATIGGLVDHEDWWYPAC-------KCHRSVSADSG-AFY 322
Query: 507 CDRCNQEFEECDYRYLLQAQILDHTGLTWVTAF 539
C C + + R+ ++ + D T + F
Sbjct: 323 CKGCAKHVFQMVPRFRVKVNVSDATNVGVFVVF 355
>Medtr4g036240.1 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830642-11833873 | 20130731
Length = 560
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 98/443 (22%), Positives = 186/443 (41%), Gaps = 45/443 (10%)
Query: 181 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD--LLDSDGGEIRVTCFNSVV 238
PI+ ++ + W IKARV + +N + FS + L+DS+G I + +++
Sbjct: 7 PISQISSSKPAWNIKARVVRLWKVSDFNR---NTLPFSIEMVLMDSEGSRIHASIKKTLL 63
Query: 239 DRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFS 298
+F I GKVY S ++ A ++ + L+ + P + F
Sbjct: 64 YKFQSEIREGKVY--SFENMGVAANGGSYKTTHYPYKLNFQFGTKCLPLCGALVSGSDFK 121
Query: 299 FRPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTL 356
F PISDI + D + ++DVIG++T V R NG T+ V+ + ++ G ++ TL
Sbjct: 122 FVPISDIVGGSYDCDYLVDVIGMLTGVGTEREYER-NGSATKLNVIAM-EADGYKLQCTL 179
Query: 357 WGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSG--KSIGSISTTQLFINPDFPEAHS 414
+G + + L A V +++++ KV F ++ T+L NP E +
Sbjct: 180 FGTYVDELNTFLATGETANV--VVSIQLAKVKVFQDNIHIQNCLNCTRLKFNPVCVEGTA 237
Query: 415 LRDWF---DQVGKDSASLSIS------KDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWI 465
++ D L++ +DF+ P+ I +GL S +
Sbjct: 238 FKNRMIENDDTPSPLTQLAVEPSIDPLQDFLFNTPRTTI---------QGLKDSQQEGMY 288
Query: 466 TVRATIS-FMKTDTFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQ 524
V T+ + + + YTAC C+K V + M + C++CN+ + RY ++
Sbjct: 289 VVLGTVKQIVNPENWYYTAC-------MCNKSVYPAEGMHF-CEKCNRHVVKVFPRYSIK 340
Query: 525 AQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFKLK 584
+++D + F + S ++ L+ D+ I + + ++FK++
Sbjct: 341 VRVVDDSDCATFVLFDRDATMLFNKSCADI--LETHRADEGVLPTEIAALVNCTYLFKVE 398
Query: 585 IKEELYGD-EQKVKITVVKADQV 606
K + EQ ++ V D V
Sbjct: 399 FKTAISPRFEQSFRVKKVCTDGV 421
>Medtr1g105785.1 | replication factor-A carboxy-terminal domain
protein | HC | chr1:47732917-47735741 | 20130731
Length = 566
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 159/380 (41%), Gaps = 47/380 (12%)
Query: 179 VIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSVV 238
+ P+AA+ + ++ RV + +NN D + LLD G+I+ + +V
Sbjct: 5 ITPVAAIVAGKINIKLRVRVVHVWTVSEFNNPNEDNSIHML-LLDDKLGKIQASAKKHLV 63
Query: 239 DRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFS 298
R ++E G Y I + + ++ +++ L N+ + + +IP F
Sbjct: 64 PRIRSNVEEGSTYDIENVLVTKNDPKYQVTQHRFKLNLIDNT--KFFKIDAATIPLNHFD 121
Query: 299 FRPISDI-ENTDSNSILDVIGVVTSVNPSVPILRK---NGMETQRRVLNLKDSSGRSVEL 354
F P ++I E ++DVIG V + L++ NG ++ L L+DS R V
Sbjct: 122 FMPFNEILEAEREEKVVDVIGQVVERDE----LKERDVNGRRSKIMDLTLQDSESRRVHC 177
Query: 355 TLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSIST----TQLFINPDFP 410
TLW + R L D I+ ++ K+ + G I +S T+L + D P
Sbjct: 178 TLWANYAERMNSFLAAH-DPSSPVIVLIQQCKLKKYQG--IMGVSNAFFGTKLLLEGDLP 234
Query: 411 EAHSLRDWFDQVGKDSASLSISKDFIPGGPKNEIRKTVSQIKD---------EGLGRSDK 461
EA + D G S SIS +N VS + D E L + +
Sbjct: 235 EAIEFKSKIDG-GDVQVSQSIS--------QNTTSTVVSLVDDMLQTKRMTIEDLIEATE 285
Query: 462 PDWITVRATISFMKTD-TFCYTACPLMIGDRQCSKKV-TRSGNMSWQCDRCNQEFEECDY 519
V ATI ++++ ++ Y AC +C+ +V T +G + C +CN
Sbjct: 286 QCQGIVLATICGIESEYSWYYQACT------KCAGRVRTVAGRL--YCGKCNTGRNAVP- 336
Query: 520 RYLLQAQILDHTGLTWVTAF 539
R+ L Q++D+TG T F
Sbjct: 337 RFKLHVQVMDNTGSTSFILF 356
>Medtr1g075850.1 | replication factor-A carboxy-terminal domain
protein | LC | chr1:33615520-33612872 | 20130731
Length = 528
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 152/352 (43%), Gaps = 44/352 (12%)
Query: 192 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSVVDRFYDSIEAGKVY 251
W IK RV ++ + N V G +I ++ F + GKVY
Sbjct: 18 WKIKVRVLRLWEVPAFLNPDQTNSV-------EMGTKIHAGVRKQLLYVFQSKLSEGKVY 70
Query: 252 LISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFRPISDI--ENTD 309
+S S+ P+ ++ + ++I + V++C ED SIP S I D+ +D
Sbjct: 71 QMSCFSVAPSVGSYRTTSHPYKIVFQMTTKVQVC--EDASIPSFGISLCKIVDVCQHTSD 128
Query: 310 SNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEFCNREGQRLQ 369
+ ++DV+G +T ++ +R +G T+ V + D+SG+ E L+G++ + + +
Sbjct: 129 HDYLVDVLGFMTDISAEREYVR-DGKVTKMVVFEITDASGK-CECALFGQYVDTLNKLMG 186
Query: 370 EMVDAGVFPILAVKAGKVSDFSGKSI--GSISTTQLFINPDFPEAHSLRDWFDQVGKDSA 427
+ AG PI+ V+ KV F K+ I+TT + IN + +R D +
Sbjct: 187 K--SAGGMPIILVQFAKVKIFRDKASLQNVINTTWILINLPIEQDDQVRKSVTFGSTDVS 244
Query: 428 SL---------SISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATIS-FMKTD 477
S+ S+ +DF+ PK + + S D+G+ V +TIS + +
Sbjct: 245 SIPRIGSRSKVSLEEDFLRTYPKKTLEQLHSTF-DDGV--------FVVYSTISGLVDHE 295
Query: 478 TFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILD 529
+ Y AC +C + V+ ++ C C + + R+ ++ + D
Sbjct: 296 DWWYPAC-------KCHRSVSADSG-AFYCKGCAKHVFQMVPRFRVKVNVSD 339
>Medtr5g026880.1 | replication factor-A protein 1, amine-terminal
domain protein | HC | chr5:11111702-11112243 | 20130731
Length = 135
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 13/113 (11%)
Query: 1 MSVNLTANAIPTIIGGDVNAKPLVQVLDVALVSGGNNSQQQQRYRVVLSDAVSSHQAMLA 60
M+VNLT AI T+ +P++QV D+ LV N+ + YR+VLSD + Q ML
Sbjct: 1 MAVNLTQGAIITMCFTSEVWEPVLQVFDMKLVQSQQNNTTEP-YRLVLSDGLYYQQGMLV 59
Query: 61 AQLNDHVRNGRVKKGSVVQLIDYICSTLQNRKIIVVLNMETIILD-CEIIGNP 112
Q N V +GR++KGS+V+L + C +++ +I+D C++IG P
Sbjct: 60 VQKNHLVHSGRLQKGSIVKLSHFYCD-----------DVKYVIMDKCDLIGKP 101
>Medtr6g039240.1 | animal RPA1 domain protein | LC |
chr6:14180761-14182238 | 20130731
Length = 289
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 137/300 (45%), Gaps = 47/300 (15%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS +L +D G I + +++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLP---FSMELVLMDRKGDRIGASIRRTLIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS ++ ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKEQLQEGMVFTISSFNVASNSGSYRPSRNEYKLNFTINTKVKL--SKTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLW 357
P D+ E+ D+N ++DVIGV+ V G+E + +D + R + TL+
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGV----------GVEREYE----RDGTYR-FKCTLF 167
Query: 358 GEFCNREGQRLQEMVDAGVF--PILAVKAGKVSDFSGKSI--GSISTTQLFINPDFPEAH 413
GE+ + L + +G ++A+ KV F GK + S+T++ NP+ E
Sbjct: 168 GEYV----EELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITFNPEIGETK 223
Query: 414 SLRDWFDQVGKDSAS-----------LSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKP 462
LR F +S + +S+ ++F+ P R T+ ++K+ G+ P
Sbjct: 224 ELRKSFLSANTNSPASGLIQLPNSSCISVHEEFLLLTP----RTTIEELKNVYFGKVCTP 279
>Medtr1g094230.1 | animal RPA1 domain protein | LC |
chr1:42436471-42437983 | 20130731
Length = 303
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 138/305 (45%), Gaps = 47/305 (15%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS +L +D G I + +++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLP---FSMELVLMDRKGDRIGASIRRTLIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS ++ ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKEQLQEGMVFTISSFNVASNSGSYRPSRNEYKLNFTINTKVKL--SKTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLW 357
P D+ E+ D+N ++DVIGV+ V G+E + +D + R + TL+
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGV----------GVEREYE----RDGTYR-FKCTLF 167
Query: 358 GEFCNREGQRLQEMVDAGVF--PILAVKAGKVSDFSGKSI--GSISTTQLFINPDFPEAH 413
GE+ + L + +G ++A+ KV F GK + S T++ NP+ E
Sbjct: 168 GEYV----EELNSFLSSGESQNAVVAIMLTKVKLFQGKPALRNAFSYTRITFNPEMGETK 223
Query: 414 SLRDWFDQVGKDSAS-----------LSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKP 462
+R F +S + + ++++F+ P R T+ ++K+ G+ P
Sbjct: 224 EIRKSFLSANTNSPASGLIQLPNSSRIPVNEEFLLLTP----RTTIEELKNVYFGKVCTP 279
Query: 463 DWITV 467
I +
Sbjct: 280 FGIML 284
>Medtr8g463820.1 | animal RPA1 domain protein | LC |
chr8:22514633-22516142 | 20130731
Length = 283
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 133/291 (45%), Gaps = 47/291 (16%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS +L +D G I + +++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLP---FSMELVLMDRKGDRIGASIRRTLIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS + ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKEQLQEGMVFTISSFDVASNSGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLW 357
P D+ E+ D+N ++DVIGV+ V G+E + +D + R + TL+
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGV----------GVEREYE----RDGTYR-FKCTLF 167
Query: 358 GEFCNREGQRLQEMVDAGVF--PILAVKAGKVSDFSGKSI--GSISTTQLFINPDFPEAH 413
GE+ + L + +G ++A+ KV F GK + S+T++ NP+ E
Sbjct: 168 GEYV----EELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITFNPEIGETK 223
Query: 414 SLRDWFDQVGKDSAS-----------LSISKDFIPGGPKNEIRKTVSQIKD 453
LR F +S + +S+ ++F+ P R T+ ++K+
Sbjct: 224 ELRKSFLSANTNSPASGLIQLPNSSCISVHEEFLLLTP----RTTIEELKN 270
>Medtr8g088810.1 | DUF223 domain protein | LC |
chr8:36895897-36893498 | 20130731
Length = 306
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 11/239 (4%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSVVDRF 241
I+ ++P + W + RV + Y N + + F L+D G +I + +++ +F
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLPFSM-EFVLIDRKGDQIGASIRRTLIYKF 66
Query: 242 YDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFRP 301
+ ++ G V+ IS + ++ NE+++ N+ V+L + +P +SF P
Sbjct: 67 KEQLQEGMVFTISSFDVASNSGSYRPSHNEYKLNFTINTKVKLS--KTILVPINVYSFTP 124
Query: 302 ISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGE 359
D+ E+ D+N ++DVIGV+ V R+ G +T+ V+ L DS+G + TL+GE
Sbjct: 125 APDVFNESYDNNYLVDVIGVIIGVGVEREYERE-GTKTKMNVIEL-DSNGYRFKCTLFGE 182
Query: 360 FCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSI--GSISTTQLFINPDFPEAHSLR 416
+ L V ++A+ KV F GK ++S+T++ NP+ E LR
Sbjct: 183 YVEELNSLLSSDESQNV--VVAIMLTKVKLFQGKPALQNALSSTRITFNPEIGETKELR 239
>Medtr1g052715.1 | DUF223 domain protein | LC |
chr1:21677037-21675057 | 20130731
Length = 334
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Query: 221 LLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNS 280
LLD+ G I + ++ +F D E G +Y+I + + F +++++ L +
Sbjct: 5 LLDNQGVTIHASVRKHLLPQFKDQFEKGSIYVIEKLMVAQNDPTFKTTPHKYKLNLMGGT 64
Query: 281 TVELCPDEDGSIPRQQFSFRPISDIENTD-SNSILDVIGVVTSVNPSVPILRKNGMETQR 339
T+ D + IP++ F F DI N + ++DVIG V + + + KNG +
Sbjct: 65 TIFKLKDSN-EIPKRHFQFMTFVDIMNCHKEDRLIDVIGHVVEKD-ELKVTEKNGKTNKV 122
Query: 340 RVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIG--- 396
L+D G + TLW ++ + +R E D + ++ ++ K+ + G ++G
Sbjct: 123 MDATLEDLDGNRIHCTLWDDYA-EQLKRFLESHDPNLPAVILIQMCKLKKYFG-AMGISN 180
Query: 397 SISTTQLFINPDFPEAHS 414
+ T+L + + PE S
Sbjct: 181 AFYGTKLLFDVELPEVAS 198
>Medtr3g056270.1 | replication factor-A carboxy-terminal domain
protein | HC | chr3:22409504-22413525 | 20130731
Length = 719
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 84/406 (20%), Positives = 163/406 (40%), Gaps = 40/406 (9%)
Query: 216 VFSFDLLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIF 275
V S L G +I + ++ +F I GKVY + ++ + ++
Sbjct: 200 VVSIQLAKVKGSKIHASIKKTLWYKFQSEIREGKVYSFENMGVAANGGSYKTTHHPYK-- 257
Query: 276 LDSNSTVELCPDEDGSIPRQQFSFRPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKN 333
L+ + P + F F PI DI + D + ++DVIG++T V R N
Sbjct: 258 LNVQFGTKCLPLCGALVSGSDFKFVPIFDIVGGSYDCDYLVDVIGMLTGVGTEREYER-N 316
Query: 334 GMETQRRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGK 393
G T+ V+ + ++ G ++ TL+G + + L A V +++++ KV F
Sbjct: 317 GSATKLNVIAM-EADGYKLQCTLFGTYVDELNTFLATGETANV--VVSIQLAKVKVFQDN 373
Query: 394 SI--GSISTTQLFINPDFPEAHSLRDWF---DQVGKDSASLSIS------KDFIPGGPKN 442
++ T+L NP E + ++ D L++ +DF+ P+
Sbjct: 374 IHIQNCLNCTRLKFNPVCAEGTAFKNRMIENDDTPSPLTQLAVEPSIDPLQDFLFNTPRT 433
Query: 443 EIRKTVSQIKDEGLGRSDKPDWITVRATIS-FMKTDTFCYTACPLMIGDRQCSKKVTRSG 501
I +GL S + V T+ + + + YTAC C+K V +
Sbjct: 434 TI---------QGLKDSQQEGMYVVLGTVKQIVNPENWYYTAC-------MCNKSVYPAE 477
Query: 502 NMSWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEE 561
M + C++CN+ + RY ++ +++D + F + S ++ L+
Sbjct: 478 GMHF-CEKCNRHVVKVFPRYSIKVRVVDDSDCATFVLFDRDATMLFNKSCADI--LETHR 534
Query: 562 QDDDRFGEIIKSKLFNHFVFKLKIKEELYGD-EQKVKITVVKADQV 606
D+ I + + ++FK++ K + EQ ++ V D V
Sbjct: 535 ADEGVLPTEIGALVNCTYLFKVEFKTAISPRFEQSFRVKKVCTDGV 580
>Medtr6g445520.1 | replication factor-A carboxy-terminal domain
protein | HC | chr6:15886770-15884303 | 20130731
Length = 428
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 55/279 (19%)
Query: 333 NGMETQRRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAG-----VFPILAVKAGKV 387
NG +T+ + L D G ++T++G++ + L V AG + +L K
Sbjct: 16 NGAKTKMVAMEL-DYDGFKFKVTIFGQY----AEELNAFVAAGETDKVIVVVLLAKVMIW 70
Query: 388 SD------FSGKSIGSISTTQLFINPDFPEAHSLRDWFDQVGKDS------------ASL 429
D + +I +T+L NPD AH L+ VGKD + +
Sbjct: 71 QDRFFPICMAATVQNTIYSTKLIFNPDLIVAHDLKK--RMVGKDGVPSPGITFLQDPSRI 128
Query: 430 SISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISF-MKTDTFCYTACPLMI 488
+ DF+ P RKTV +K+ + V+AT+ F + TD + YTAC
Sbjct: 129 TEEDDFLKITP----RKTVEDLKECAMESC-----FVVKATVKFVIDTDEWWYTAC---- 175
Query: 489 GDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMG 548
C+KKV M + C +CN+ RY+++ +++D T F ++
Sbjct: 176 ---VCNKKVVPDEKMFF-CAKCNKHVIHVCPRYMIKVRVIDETDSATFVIFDRDATLLLK 231
Query: 549 CSAKELYFLKNEEQDDDRFGEI---IKSKLFNHFVFKLK 584
+A ++ E D G + I S + + F+FK++
Sbjct: 232 KTAADVI----ESMGSDESGTLPKEISSLVESTFLFKVE 266
>Medtr4g036240.2 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830210-11833873 | 20130731
Length = 480
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 137/325 (42%), Gaps = 38/325 (11%)
Query: 297 FSFRPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVEL 354
F F PISDI + D + ++DVIG++T V R NG T+ V+ + ++ G ++
Sbjct: 40 FKFVPISDIVGGSYDCDYLVDVIGMLTGVGTEREYER-NGSATKLNVIAM-EADGYKLQC 97
Query: 355 TLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSI--GSISTTQLFINPDFPEA 412
TL+G + + L A V +++++ KV F ++ T+L NP E
Sbjct: 98 TLFGTYVDELNTFLATGETANV--VVSIQLAKVKVFQDNIHIQNCLNCTRLKFNPVCVEG 155
Query: 413 HSLRDWF---DQVGKDSASLSIS------KDFIPGGPKNEIRKTVSQIKDEGLGRSDKPD 463
+ ++ D L++ +DF+ P+ I +GL S +
Sbjct: 156 TAFKNRMIENDDTPSPLTQLAVEPSIDPLQDFLFNTPRTTI---------QGLKDSQQEG 206
Query: 464 WITVRATIS-FMKTDTFCYTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYL 522
V T+ + + + YTAC C+K V + M + C++CN+ + RY
Sbjct: 207 MYVVLGTVKQIVNPENWYYTAC-------MCNKSVYPAEGMHF-CEKCNRHVVKVFPRYS 258
Query: 523 LQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFK 582
++ +++D + F + S ++ L+ D+ I + + ++FK
Sbjct: 259 IKVRVVDDSDCATFVLFDRDATMLFNKSCADI--LETHRADEGVLPTEIAALVNCTYLFK 316
Query: 583 LKIKEELYGD-EQKVKITVVKADQV 606
++ K + EQ ++ V D V
Sbjct: 317 VEFKTAISPRFEQSFRVKKVCTDGV 341
>Medtr8g036090.1 | animal RPA1 domain protein | HC |
chr8:13279086-13278300 | 20130731
Length = 172
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS +L +D G I + +++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLP---FSMELVLMDRKGDRIGASIRRTLIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS ++ ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKEQLQEGMVFTISSFNVASNSGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSG 349
P D+ E+ D+N ++DVIGV+ V R +G++T+ V+ L DS+G
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGVGVEREYER-DGVKTKMNVIEL-DSNG 172
>Medtr4g471610.1 | animal RPA1 domain protein | HC |
chr4:27071837-27072623 | 20130731
Length = 172
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS +L +D G I + +++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLP---FSMELVLMDRKGDRIGASIRRTLIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS ++ ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKEQLQEGMVFTISSFNVASNSGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSG 349
P D+ E+ D+N ++DVIGV+ V R +G++T+ V+ L DS+G
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGVGVEREYER-DGVKTKMNVIEL-DSNG 172
>Medtr3g078440.1 | animal RPA1 domain protein | HC |
chr3:35350146-35349360 | 20130731
Length = 172
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS +L +D G I + +++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLP---FSMELVLMDRKGDRIGASIRRTLIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS ++ ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKEQLQEGMVFTISSFNVASNSGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSG 349
P D+ E+ D+N ++DVIGV+ V R +G++T+ V+ L DS+G
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGVGVEREYER-DGVKTKMNVIEL-DSNG 172
>Medtr8g096680.1 | animal RPA1 domain protein | HC |
chr8:40558216-40559002 | 20130731
Length = 172
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 11/172 (6%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS +L +D G I + +++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLP---FSMELVLMDRKGDRIGASIRRTLIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS + ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKEQLQEGMVFTISSFDVASNSGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSG 349
P D+ E+ D+N ++DVIGV+ V R +G++T+ V+ L DS+G
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGVGVEREYER-DGVKTKMNVIEL-DSNG 172
>Medtr1g036740.1 | animal RPA1 domain protein | HC |
chr1:13497342-13498128 | 20130731
Length = 172
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 11/172 (6%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS +L +D G I + +++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLP---FSMELVLMDRKGDRIGASIRRTLIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS + ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKEQLQEGMVFTISSFDVASNSGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSG 349
P D+ E+ D+N ++DVIGV+ V R +G++T+ V+ L DS+G
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGVGVEREYER-DGVKTKMNVIEL-DSNG 172
>Medtr2g062200.1 | DUF223 domain protein | LC |
chr2:26248587-26247742 | 20130731
Length = 185
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 25/196 (12%)
Query: 221 LLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNS 280
L+D+ G +I T +++ +F ++ GKVY +S + ++ K+E+++ N+
Sbjct: 3 LMDASGNKIHATVRRTLIYKFEKDLQEGKVYSMSGFGVAANLGSYRTTKHEYKLNFQFNT 62
Query: 281 TVELCPDEDGSIPRQQFSFRPISD---IENT--DSNSILDVIGVVTSVNPSVPILRKNGM 335
V+LC S+P + PIS+ + N+ D++ ++DV+G++T V R NG
Sbjct: 63 KVKLCGKN--SVPDDIY---PISNSIVVFNSEYDTDYLVDVMGMLTGVGMQREYER-NGA 116
Query: 336 ETQRRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVF--PILAVKAGKVSDFSGK 393
+T+ + L + G ++TL+G++ + L V AG I+ V KV + G
Sbjct: 117 KTKMVAMKL-NYDGFKFKVTLFGQYAD----ELNAFVAAGETNKVIVVVLLAKVKIWQGN 171
Query: 394 SIGSISTTQLFINPDF 409
F NP F
Sbjct: 172 IF-------FFCNPKF 180
>Medtr6g006000.1 | replication factor-A protein 1, amine-terminal
domain protein | LC | chr6:953298-952270 | 20130731
Length = 206
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 18/131 (13%)
Query: 3 VNLTANAIPTII-----GGDVNAKP--LVQVLDVA---LVSGGNNSQQQQRYRVVLSDAV 52
VNLT+NAI I+ G KP L+Q+L + + G N ++L D
Sbjct: 31 VNLTSNAIHDILFVHKEGTLKGEKPYMLMQILHIVNFPITEGLCNKPH-----LLLWDGQ 85
Query: 53 SSHQAMLAAQLN-DHVRNGRVKKGSVVQLIDYICSTLQN-RKIIVVLNMETIILDCEIIG 110
++H A+L+ L+ ++R G + GS+V+L+ Y C TL + KIIVVL M + D ++G
Sbjct: 86 NAHYALLSVSLSRTYLREG-YRVGSIVRLMQYCCRTLDSGDKIIVVLKMNMMKADAMVVG 144
Query: 111 NPKSFMNSDLP 121
+P + + LP
Sbjct: 145 DPPNAEDIRLP 155
>Medtr3g095950.1 | animal RPA1 domain protein | HC |
chr3:43845609-43846394 | 20130731
Length = 172
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS +L +D G I + +++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLP---FSMELVLIDRKGDRIGASIRRTLIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS ++ ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSG 349
P D+ E+ D+N ++DVIGV+ V R +G++T+ V+ L DS+G
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGVGVEKEYER-DGVKTKMNVIEL-DSNG 172
>Medtr3g116750.1 | animal RPA1 domain protein | HC |
chr3:54610965-54611750 | 20130731
Length = 172
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS +L +D G I + +++
Sbjct: 8 ISNVSPRKQSWTLVVRVARAWFGQDYKNKKLP---FSMELVLIDRKGDRIGASIRRTLIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS ++ ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSG 349
P D+ E+ D+N ++DVIGV+ V R +G++T+ V+ L DS+G
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGVGVEKEYER-DGVKTKMNVIEL-DSNG 172
>Medtr5g085220.1 | animal RPA1 domain protein | LC |
chr5:36789021-36788235 | 20130731
Length = 172
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 182 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNSVVD 239
I+ ++P + W + RV + Y N + FS DL +D G I + ++
Sbjct: 8 ISNVSPRKQSWTLVVRVVPAWFGKDYKNKKLS---FSMDLVLIDRKGDRIGASIRRILIY 64
Query: 240 RFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSF 299
+F + ++ G V+ IS + ++ +NE+++ N+ V+L + +P +SF
Sbjct: 65 KFKEQLQEGMVFTISSFIVASNSGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 300 RPISDI--ENTDSNSILDVIGVVTSV 323
P D+ E+ D+N ++DVIGV+ V
Sbjct: 123 TPAPDVFNESYDNNCLVDVIGVMIGV 148
>Medtr1g072220.1 | DUF223 domain protein | LC |
chr1:32050688-32051353 | 20130731
Length = 131
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 221 LLDSDGGEIRVTCFNSVVDRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNS 280
L+D G I V+ +++ +F + ++ G V+ IS + + +NE+++ N+
Sbjct: 5 LMDRKGDRIGVSIRRTLIYKFKEQLQEGMVFTISSSDVASNSDLYRPSRNEYKLNFTINT 64
Query: 281 TVELCPDEDGSIPRQQFSFRPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQ 338
V+L + +P +SF P DI E+ D+N ++DVIGV+ V R +G++T+
Sbjct: 65 KVKLS--KTVLVPTNVYSFTPAPDIFNESYDNNYLVDVIGVMIGVGVEREYER-DGVKTK 121
Query: 339 RRVLNLKDSSG 349
V+ L DS+G
Sbjct: 122 MNVIEL-DSNG 131
>Medtr3g056240.1 | DUF223 domain protein | HC |
chr3:22396065-22393475 | 20130731
Length = 323
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 15/215 (6%)
Query: 181 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD--LLDSDGGEIRVTCFNSVV 238
PI+ ++ + IKARV L +N + FS + L+DS+G I + ++
Sbjct: 7 PISQISSSKPAGNIKARVVRLWKLSDFNR---NTLPFSIEMVLMDSEGSRIHASIKKTLW 63
Query: 239 DRFYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEI-FLDSNSTVELCPDEDGSIPRQQF 297
+F I GKVY + ++ + +++ F + LC + F
Sbjct: 64 YKFQSEIREGKVYSFENMGVAANGGSYKTTHHPYKLNFQFGTKCLPLC---GALVSGSDF 120
Query: 298 SFRPISDI--ENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELT 355
F PISDI + D + ++DVIG++T V R NG T+ V+ + ++ G ++ T
Sbjct: 121 KFVPISDIVGGSYDCDYLVDVIGMLTGVGTEREYER-NGSATKLNVIAM-EADGYKLQCT 178
Query: 356 LWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDF 390
L+G + + L A V +++++ KV F
Sbjct: 179 LFGTYVDELNTFLATGETANV--VVSIQLAKVKRF 211