Miyakogusa Predicted Gene

Lj6g3v1161820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1161820.1 Non Characterized Hit- tr|C5Y1H4|C5Y1H4_SORBI
Putative uncharacterized protein Sb04g032730
OS=Sorghu,40.35,0.000000000006,DOG1,DOG1 domain; seg,NULL,CUFF.59157.1
         (286 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g044090.1 | seed dormancy control protein | HC | chr2:1917...   330   1e-90

>Medtr2g044090.1 | seed dormancy control protein | HC |
           chr2:19172702-19171836 | 20130731
          Length = 288

 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 166/294 (56%), Positives = 205/294 (69%), Gaps = 35/294 (11%)

Query: 1   MLKAVFSRQKQ-------SQSQGFKEYYSEWFTALKNNLLPLLRRSISGDSPTILSTHVE 53
           MLK+VF+RQKQ       S S+ FKEYY+EWF  LKNN LPLLRRSISGDS T+LSTHVE
Sbjct: 1   MLKSVFNRQKQHTSSSSSSTSRPFKEYYTEWFNTLKNNHLPLLRRSISGDSLTLLSTHVE 60

Query: 54  MLHQHFQSYYHALDAAITSDPTQLLSQPWRHPLEIPLLWLGDLHPSIFTNLARSFLXXXX 113
           ++HQHFQSYYH LDAA  +DP+Q+L+Q W + LE PLLW+ DLHP IFTNLARSFL    
Sbjct: 61  LIHQHFQSYYHTLDAAAITDPSQILNQDWHNSLEKPLLWISDLHPFIFTNLARSFLDDED 120

Query: 114 XXXXXXXXXXXXXXXXXXXXXXNHSLADQIDRVXXXXXXLNLHRPWQVALAWRNPPESLL 173
                                      ++ +        ++  RPWQ+A+AWRNP E+L+
Sbjct: 121 ---------------------------NETETNDNSSVSMSSDRPWQIAMAWRNPSETLI 153

Query: 174 LRMDEIECGLRVIVPTLSDRLARAEAGFVHRVVGDWFQCRE-SKGAAKVAVGEDVRAHMD 232
            RM++IECGL+ IVPTL+DRL RAE  F+  VVGDWF C++      KV +G DVR +++
Sbjct: 154 TRMEQIECGLKSIVPTLNDRLTRAEGCFIKNVVGDWFSCKDRGDNKGKVVLGNDVRVYIE 213

Query: 233 EVVSVFLCANRVRRSVLVDIISAATVYQAALFLEGLAQFLIGFKDHDLLTSAQH 286
           E VSV L ANR+RRSVLVDIISAA+VYQAALFLE L+ FLIGFKDHDL+ + +H
Sbjct: 214 EFVSVVLYANRLRRSVLVDIISAASVYQAALFLEALSMFLIGFKDHDLVHAVEH 267