Miyakogusa Predicted Gene

Lj6g3v1126350.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1126350.2 Non Characterized Hit- tr|B4FEF9|B4FEF9_MAIZE
Uncharacterized protein OS=Zea mays PE=4 SV=1,76.92,9e-19,Helical
region found in SNAREs,Target SNARE coiled-coil domain; NOVEL PLANT
SNARE,NULL; VESICLE TRAN,CUFF.59126.2
         (270 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g123910.1 | novel plant SNARE-like protein | HC | chr4:510...   453   e-128
Medtr2g045960.1 | novel plant SNARE-like protein | HC | chr2:201...   451   e-127
Medtr4g099140.1 | novel plant SNARE-like protein | HC | chr4:410...   287   6e-78

>Medtr4g123910.1 | novel plant SNARE-like protein | HC |
           chr4:51088786-51082714 | 20130731
          Length = 269

 Score =  453 bits (1165), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/267 (85%), Positives = 245/267 (91%)

Query: 4   ANLQMSPQVEQIHGEIRDHFRALANGFPRLDKIKDSNRQSKQLEELAEKMRECQRLIKDF 63
           +NL+M+PQ+EQIHGEIRD FRALANGF +LDKIKDSNRQS QLEEL  KMR+C+RLIKDF
Sbjct: 3   SNLKMTPQLEQIHGEIRDIFRALANGFQKLDKIKDSNRQSTQLEELTGKMRDCKRLIKDF 62

Query: 64  DREIKDEEGRNPPEVSKQLNDEKQSMIREHNSYVALRKTYMNNLGNKKLELFDMGAGASE 123
           DREIKDE   NP EV+KQLNDEKQSMI+E NSYVALRKTYMN +GNKKLELFDMGAGASE
Sbjct: 63  DREIKDEGAGNPEEVNKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDMGAGASE 122

Query: 124 PIAEDNVQLASELSNQELINAGMKTMDETDQAIERSNQVVHQTIEMGTQTATTLNGQTEQ 183
             AE NVQLASE+SNQEL+NAGMKTMDETDQAIERS QVVHQTIE+GTQTA+TL GQTEQ
Sbjct: 123 STAEGNVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTIEVGTQTASTLKGQTEQ 182

Query: 184 MGRIINELDSLQFSIKKASQLVKEIGRKVATDTCIMLFLFLIVCGVAAIIVVKFVNPNNK 243
           MGRI+NELDS+QFSIKKASQLVKEIGR+VATD CIMLFLFLIVCGV AIIVVK VNPNNK
Sbjct: 183 MGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNK 242

Query: 244 DINDIPGLAPPAPTRRLLYVRTGENFD 270
           DI DIPGLAPP P+RRLLYVRTGE FD
Sbjct: 243 DIRDIPGLAPPVPSRRLLYVRTGELFD 269


>Medtr2g045960.1 | novel plant SNARE-like protein | HC |
           chr2:20128956-20137992 | 20130731
          Length = 265

 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/266 (85%), Positives = 246/266 (92%), Gaps = 1/266 (0%)

Query: 1   MATANLQMSPQVEQIHGEIRDHFRALANGFPRLDKIKDSNRQSKQLEELAEKMRECQRLI 60
           MAT+ LQM+PQVEQIHG+I D FRALANGF +LDKIKDSNRQS QLEEL  KMREC+ LI
Sbjct: 1   MATS-LQMTPQVEQIHGQIHDIFRALANGFQKLDKIKDSNRQSNQLEELTAKMRECKGLI 59

Query: 61  KDFDREIKDEEGRNPPEVSKQLNDEKQSMIREHNSYVALRKTYMNNLGNKKLELFDMGAG 120
           K+FDREIKDE+GRNPPEV+KQLNDEKQSMI+E NSYVALRKTYM+ LGNKKLELFD GAG
Sbjct: 60  KEFDREIKDEDGRNPPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKLELFDTGAG 119

Query: 121 ASEPIAEDNVQLASELSNQELINAGMKTMDETDQAIERSNQVVHQTIEMGTQTATTLNGQ 180
           +S+P+ E+NVQLASE+SNQELINAG KTMDETDQAIERS QVVHQTIE+GTQTATTL GQ
Sbjct: 120 SSQPMTEENVQLASEMSNQELINAGTKTMDETDQAIERSKQVVHQTIEVGTQTATTLKGQ 179

Query: 181 TEQMGRIINELDSLQFSIKKASQLVKEIGRKVATDTCIMLFLFLIVCGVAAIIVVKFVNP 240
           TEQMGRI+NELDS+QFSIKKASQLVKEIGRKVATD CIMLFLFLIVCGV AIIVVK VNP
Sbjct: 180 TEQMGRIVNELDSIQFSIKKASQLVKEIGRKVATDKCIMLFLFLIVCGVIAIIVVKIVNP 239

Query: 241 NNKDINDIPGLAPPAPTRRLLYVRTG 266
           +NKDI DIPGLAPP PTRRLLYVRTG
Sbjct: 240 HNKDIRDIPGLAPPVPTRRLLYVRTG 265


>Medtr4g099140.1 | novel plant SNARE-like protein | HC |
           chr4:41060024-41054160 | 20130731
          Length = 263

 Score =  287 bits (735), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 152/257 (59%), Positives = 200/257 (77%), Gaps = 5/257 (1%)

Query: 8   MSPQVEQIHGEIRDHFRALANGFPRLDKIKDSNRQSKQLEELAEKMRECQRLIKDFDREI 67
           +S  + +I G + D+FRAL+NGF +L+KIKD++R+S+QLEEL EKMREC+ LIK+FD+E+
Sbjct: 7   ISEDLAEIDGRVADNFRALSNGFQKLEKIKDASRKSRQLEELTEKMRECKGLIKEFDKEV 66

Query: 68  KDEEGRNPPEVSKQLNDEKQSMIREHNSYVALRKTYMNNLGNKKLELFDMGAGASEPIAE 127
           K  E     E +K LN++KQSMI+E NSYVAL+K Y +N+ NK++ELF+   G +E   E
Sbjct: 67  KALEASFDRETTKFLNEKKQSMIKELNSYVALKKQYASNIENKRIELFE---GPNEGDTE 123

Query: 128 DNVQLASELSNQELINAGMKTMDETDQAIERSNQVVHQTIEMGTQTATTLNGQTEQMGRI 187
           +NV LAS +SN++L++ G + MD+TDQAIER  ++V  T+ +GT+TA  L  QTEQM R+
Sbjct: 124 ENVLLASAMSNEQLMDHGNRMMDDTDQAIERGKRIVQDTVNIGTETAAALKAQTEQMSRV 183

Query: 188 INELDSLQFSIKKASQLVKEIGRKVATDTCIMLFLFLIVCGVAAIIVVKFVNPNNKDIND 247
           +NELDS+ FSIKKAS+LVKEIGR+VATD CIM  LFLIV GV AII+VK V+P NKDI D
Sbjct: 184 VNELDSIHFSIKKASKLVKEIGRQVATDKCIMALLFLIVIGVIAIIIVKLVHPENKDIRD 243

Query: 248 IPGLAPPAPT--RRLLY 262
           IPGLAPP  T  RRLL+
Sbjct: 244 IPGLAPPVVTNNRRLLW 260