Miyakogusa Predicted Gene

Lj6g3v1126350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1126350.1 tr|D7L787|D7L787_ARALL NPSN13 OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_479220 PE=4 SV=1,72.73,3e-19,
,CUFF.59126.1
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g123910.1 | novel plant SNARE-like protein | HC | chr4:510...   110   2e-25
Medtr2g045960.1 | novel plant SNARE-like protein | HC | chr2:201...   106   4e-24
Medtr4g099140.1 | novel plant SNARE-like protein | HC | chr4:410...    57   3e-09

>Medtr4g123910.1 | novel plant SNARE-like protein | HC |
           chr4:51088786-51082714 | 20130731
          Length = 269

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 58/68 (85%)

Query: 6   QWYMNNLGNKKLELFDMGAGASEPIAEDNVQLASELSNQELINAGMKTMDETDQAIERSN 65
           + YMN +GNKKLELFDMGAGASE  AE NVQLASE+SNQEL+NAGMKTMDETDQAIERS 
Sbjct: 100 KTYMNTIGNKKLELFDMGAGASESTAEGNVQLASEMSNQELVNAGMKTMDETDQAIERSK 159

Query: 66  QVTLQNYD 73
           QV  Q  +
Sbjct: 160 QVVHQTIE 167


>Medtr2g045960.1 | novel plant SNARE-like protein | HC |
           chr2:20128956-20137992 | 20130731
          Length = 265

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 58/68 (85%)

Query: 6   QWYMNNLGNKKLELFDMGAGASEPIAEDNVQLASELSNQELINAGMKTMDETDQAIERSN 65
           + YM+ LGNKKLELFD GAG+S+P+ E+NVQLASE+SNQELINAG KTMDETDQAIERS 
Sbjct: 100 KTYMSTLGNKKLELFDTGAGSSQPMTEENVQLASEMSNQELINAGTKTMDETDQAIERSK 159

Query: 66  QVTLQNYD 73
           QV  Q  +
Sbjct: 160 QVVHQTIE 167


>Medtr4g099140.1 | novel plant SNARE-like protein | HC |
           chr4:41060024-41054160 | 20130731
          Length = 263

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 45/63 (71%), Gaps = 3/63 (4%)

Query: 6   QWYMNNLGNKKLELFDMGAGASEPIAEDNVQLASELSNQELINAGMKTMDETDQAIERSN 65
           + Y +N+ NK++ELF+   G +E   E+NV LAS +SN++L++ G + MD+TDQAIER  
Sbjct: 100 KQYASNIENKRIELFE---GPNEGDTEENVLLASAMSNEQLMDHGNRMMDDTDQAIERGK 156

Query: 66  QVT 68
           ++ 
Sbjct: 157 RIV 159