Miyakogusa Predicted Gene

Lj6g3v1105040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1105040.1 Non Characterized Hit- tr|I0Z4P9|I0Z4P9_9CHLO
Uncharacterized protein (Fragment) OS=Coccomyxa
subell,44.96,4e-19,FAMILY NOT NAMED,NULL; LSD1: zinc finger domain,
LSD1 subclass,Zinc finger, LSD1-type; zf-LSD1,Zinc
,NODE_56327_length_431_cov_77.517403.path2.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g089310.2 | LSD1-type zinc finger protein | HC | chr8:3710...   181   1e-46
Medtr8g089310.1 | LSD1-type zinc finger protein | HC | chr8:3710...   181   1e-46
Medtr8g089310.3 | LSD1-type zinc finger protein | HC | chr8:3710...   180   2e-46
Medtr2g047838.1 | LSD1-type zinc finger protein | HC | chr2:2090...   178   9e-46
Medtr4g098500.3 | LSD1-type zinc finger protein | HC | chr4:4058...   150   3e-37
Medtr4g098500.1 | LSD1-type zinc finger protein | HC | chr4:4058...   149   5e-37
Medtr4g098500.2 | LSD1-type zinc finger protein | HC | chr4:4058...   149   5e-37
Medtr4g088850.1 | LSD1-type zinc finger protein | HC | chr4:3545...    77   3e-15
Medtr4g088850.2 | LSD1-type zinc finger protein | HC | chr4:3545...    76   6e-15

>Medtr8g089310.2 | LSD1-type zinc finger protein | HC |
           chr8:37104096-37109257 | 20130731
          Length = 189

 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 96/112 (85%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
           M+ QLVCNGCRN L+YPRGA NVCCA CN IT VPP GM+MSQLYCGGCRTLLMY  GAT
Sbjct: 14  MQSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAT 73

Query: 61  SVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
           SVRCSCC+T+   P SNQV+H+ CGNCRT LMYP+GA SVKCA+CHYITN++
Sbjct: 74  SVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNIN 125


>Medtr8g089310.1 | LSD1-type zinc finger protein | HC |
           chr8:37102205-37109257 | 20130731
          Length = 223

 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 96/112 (85%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
           M+ QLVCNGCRN L+YPRGA NVCCA CN IT VPP GM+MSQLYCGGCRTLLMY  GAT
Sbjct: 48  MQSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAT 107

Query: 61  SVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
           SVRCSCC+T+   P SNQV+H+ CGNCRT LMYP+GA SVKCA+CHYITN++
Sbjct: 108 SVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNIN 159


>Medtr8g089310.3 | LSD1-type zinc finger protein | HC |
           chr8:37104112-37109257 | 20130731
          Length = 176

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 96/112 (85%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
           M+ QLVCNGCRN L+YPRGA NVCCA CN IT VPP GM+MSQLYCGGCRTLLMY  GAT
Sbjct: 1   MQSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAT 60

Query: 61  SVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
           SVRCSCC+T+   P SNQV+H+ CGNCRT LMYP+GA SVKCA+CHYITN++
Sbjct: 61  SVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNIN 112


>Medtr2g047838.1 | LSD1-type zinc finger protein | HC |
           chr2:20900056-20906924 | 20130731
          Length = 173

 Score =  178 bits (452), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 87/115 (75%), Positives = 97/115 (84%), Gaps = 3/115 (2%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPA---GMEMSQLYCGGCRTLLMYAN 57
           MR  ++C GCRNIL+YPRGA NVCCA C+ ITPV P    GMEMSQLYCGGCRTLLM+A 
Sbjct: 1   MRSHIMCTGCRNILLYPRGASNVCCAVCSTITPVIPVLPPGMEMSQLYCGGCRTLLMHAR 60

Query: 58  GATSVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
           GAT+VRCSCCNTI  VP+SNQ++HI CGNCRT LMYPHGA SVKCA+CHYITNV 
Sbjct: 61  GATTVRCSCCNTINLVPDSNQMNHIRCGNCRTTLMYPHGAPSVKCAVCHYITNVD 115


>Medtr4g098500.3 | LSD1-type zinc finger protein | HC |
           chr4:40586719-40583419 | 20130731
          Length = 128

 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 89/108 (82%)

Query: 4   QLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATSVR 63
           QLVC+GCRN+L+YP GA +VCCA CN +T VPP G EM+QL CGGC TLLMY  GATSV+
Sbjct: 7   QLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQ 66

Query: 64  CSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
           CSCC+T+    E+NQV+H++CGNCR  LMY +GA SVKCA+C+++T+V
Sbjct: 67  CSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV 114


>Medtr4g098500.1 | LSD1-type zinc finger protein | HC |
           chr4:40586734-40583419 | 20130731
          Length = 154

 Score =  149 bits (376), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 90/110 (81%)

Query: 2   RCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATS 61
           + QLVC+GCRN+L+YP GA +VCCA CN +T VPP G EM+QL CGGC TLLMY  GATS
Sbjct: 31  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 90

Query: 62  VRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
           V+CSCC+T+    E+NQV+H++CGNCR  LMY +GA SVKCA+C+++T+V
Sbjct: 91  VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV 140


>Medtr4g098500.2 | LSD1-type zinc finger protein | HC |
           chr4:40586719-40583419 | 20130731
          Length = 154

 Score =  149 bits (376), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 90/110 (81%)

Query: 2   RCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATS 61
           + QLVC+GCRN+L+YP GA +VCCA CN +T VPP G EM+QL CGGC TLLMY  GATS
Sbjct: 31  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 90

Query: 62  VRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
           V+CSCC+T+    E+NQV+H++CGNCR  LMY +GA SVKCA+C+++T+V
Sbjct: 91  VQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV 140


>Medtr4g088850.1 | LSD1-type zinc finger protein | HC |
           chr4:35453282-35456672 | 20130731
          Length = 133

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 47/71 (66%)

Query: 41  MSQLYCGGCRTLLMYANGATSVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSV 100
            +Q+ CG CR LL Y  GA  V+CSCC T+  V E++QV  + CG+C   LMYP+GA  V
Sbjct: 40  FAQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQV 99

Query: 101 KCAICHYITNV 111
           +C+ C ++T +
Sbjct: 100 RCSSCRFVTEI 110



 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 4   QLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATSVR 63
           Q+VC  CR +L YP GA +V C+ C  +  V  A  ++ Q+ CG C  LLMY  GA  VR
Sbjct: 42  QMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEAD-QVGQVKCGSCAVLLMYPYGAPQVR 100

Query: 64  CSCCNTITRVPESNQ 78
           CS C  +T +   N+
Sbjct: 101 CSSCRFVTEIGADNK 115


>Medtr4g088850.2 | LSD1-type zinc finger protein | HC |
           chr4:35453282-35456687 | 20130731
          Length = 149

 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 47/71 (66%)

Query: 41  MSQLYCGGCRTLLMYANGATSVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSV 100
            +Q+ CG CR LL Y  GA  V+CSCC T+  V E++QV  + CG+C   LMYP+GA  V
Sbjct: 40  FAQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQV 99

Query: 101 KCAICHYITNV 111
           +C+ C ++T +
Sbjct: 100 RCSSCRFVTEI 110



 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 4   QLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATSVR 63
           Q+VC  CR +L YP GA +V C+ C  +  V  A  ++ Q+ CG C  LLMY  GA  VR
Sbjct: 42  QMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEAD-QVGQVKCGSCAVLLMYPYGAPQVR 100

Query: 64  CSCCNTITRV 73
           CS C  +T +
Sbjct: 101 CSSCRFVTEI 110