Miyakogusa Predicted Gene

Lj6g3v1104970.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1104970.1 tr|A4RYQ1|A4RYQ1_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_32107,36.79,0.0000000000006,SUBFAMILY NOT NAMED,NULL;
VACUOLAR PROTEIN SORTING 54,NULL;
Vps54,Vps54-like,NODE_13018_length_2374_cov_61.317184.path2.1
         (478 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g047908.1 | vacuolar sorting protein | HC | chr2:21009669-...   803   0.0  

>Medtr2g047908.1 | vacuolar sorting protein | HC |
            chr2:21009669-20992664 | 20130731
          Length = 1001

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/486 (81%), Positives = 424/486 (87%), Gaps = 25/486 (5%)

Query: 1    MSKNFRADVLRENAEAVFAACDAAHGRWAKLLGVRAVLHPRLKLQEFLTIYNITQEFITA 60
            MSKNFRADVLRENAEAVFAACDAAHGRWAKLLGVR  LHPRLKLQEFLT+YNIT EFITA
Sbjct: 533  MSKNFRADVLRENAEAVFAACDAAHGRWAKLLGVRTTLHPRLKLQEFLTVYNITHEFITA 592

Query: 61   TEKIGGRLGYSIRGTLQSQAKAFVDFQHESRMAKIKALLDQETWVEIDVPEEFQSIINIL 120
            TEKIGGRLGYSIRG L SQAKAF+D QH+SR +KI A+LDQETWVEIDVP+EFQSIIN L
Sbjct: 593  TEKIGGRLGYSIRGILHSQAKAFIDCQHDSRASKIMAVLDQETWVEIDVPDEFQSIINTL 652

Query: 121  FSSDVLTSGNLNGTEEDNAHSYSD---NN-----ADAVHSNAEHQVEQTNSIETSRKSAG 172
            F  D L+SG+ NG EEDN++SY D   NN     AD   SNAE  VEQT+S + S+K   
Sbjct: 653  FPLDALSSGDPNGVEEDNSNSYHDLATNNDARPMADTGQSNAEQNVEQTDSTDESKK--- 709

Query: 173  SDGSKPLVDSVEPNRGNNRISSAQNNNVEKDHKKSVSQALLYKGVGYHMVNCGLILLKML 232
                        PNRG+++  S ++ + EKD KKS SQ L YKGVGYHMVNCGLILLKML
Sbjct: 710  ------------PNRGHSK--SLESISTEKDQKKSASQPLFYKGVGYHMVNCGLILLKML 755

Query: 233  SEYIDMNNVLPTLSSEVVHRVAEILKFFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQ 292
            SEYIDMNN+LP LSSEVVHRV EILK+FNTRTCQLVLGA AMQVSGLKSITSKHLALASQ
Sbjct: 756  SEYIDMNNLLPALSSEVVHRVVEILKYFNTRTCQLVLGAKAMQVSGLKSITSKHLALASQ 815

Query: 293  VISFIHAIIPEIRQILFLKVPETRKSLLLSEIDRVAQDYKVHRDEIHSKLVQIMRERLLV 352
            VISFIHAIIPEIRQILFLKVPE RK LLLSEIDRVAQDYKVHRDEIH+KLVQIMRERLLV
Sbjct: 816  VISFIHAIIPEIRQILFLKVPENRKLLLLSEIDRVAQDYKVHRDEIHTKLVQIMRERLLV 875

Query: 353  HLRGLPQIVESWNRPEEADPQPSQFARSLTKEVGYLQRVLSRTLNDEDVHAIFRQVVIIF 412
            HLRGLPQIVESWNRPE+ADPQPSQFARSLTKEVG+LQRVLSRTLN++DV AIFRQVV+IF
Sbjct: 876  HLRGLPQIVESWNRPEDADPQPSQFARSLTKEVGFLQRVLSRTLNEDDVQAIFRQVVVIF 935

Query: 413  HSQISEAFSRFDISTSQAQNRLSRDIKHILQCIRSLPSGDLGKSDTPNWGQLDEFLVQRF 472
            HSQISEAFSRFDISTSQAQNRL RDIKHILQCIRSLPSGDL KSDTPNWGQLDEFLVQRF
Sbjct: 936  HSQISEAFSRFDISTSQAQNRLYRDIKHILQCIRSLPSGDLSKSDTPNWGQLDEFLVQRF 995

Query: 473  GSDAVQ 478
            G+DAVQ
Sbjct: 996  GNDAVQ 1001