Miyakogusa Predicted Gene

Lj6g3v1104890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1104890.1 Non Characterized Hit- tr|B3RY12|B3RY12_TRIAD
Putative uncharacterized protein OS=Trichoplax
adhaere,40.21,0.0000000002,RNA-binding domain, RBD,NULL; RRM,RNA
recognition motif domain; SUBFAMILY NOT NAMED,NULL;
TRANSCRIPT,CUFF.59104.1
         (567 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g048340.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   615   e-176

>Medtr2g048340.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr2:21279528-21285135 | 20130731
          Length = 660

 Score =  615 bits (1585), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 343/585 (58%), Positives = 414/585 (70%), Gaps = 32/585 (5%)

Query: 1   MEEEEQEQSAVRIFVGGLGEAVTGDDLQRLFASLGTVQSIDTIRTKGRSLAYLDFIPSPT 60
           MEEEE E+  VRIFVGG+GEAVT DD++RLF SLG+VQS++TIRTKGRSLAYLDF+    
Sbjct: 1   MEEEESEKRTVRIFVGGIGEAVTSDDIRRLFESLGSVQSLETIRTKGRSLAYLDFL---A 57

Query: 61  DPKSLTKLFSKYNGCAWKGGRLRLEKAKENYLARLKKEWEEEALVNSIQSPSDDDDVPAQ 120
           D KSL+KLFSKYNGC WKGG+L+LEKAKE+YL RLKKEWEE+A++ SI+ P+ D  V   
Sbjct: 58  DSKSLSKLFSKYNGCVWKGGKLKLEKAKEHYLDRLKKEWEEDAIL-SIEPPASD--VSTH 114

Query: 121 NNEL-EENPNARRASNIPDTKQLRVFFPRLRKVKSIPFSGSGKHKYSFQNIKVPPMPVHF 179
             +L +E PNARR  + PD K L ++FPRLR VKSIPFSG+GKHKYSFQNIKV P+PVHF
Sbjct: 115 KEDLVKEKPNARRIVD-PDAKPLNIYFPRLRTVKSIPFSGTGKHKYSFQNIKVGPLPVHF 173

Query: 180 CDCEEHCSPFVKERGKVPSHGTAXXXXXX-----XXXXXXMNAVMNKLFEKEKVSNTKDL 234
           CDCEEHCSPF+ ++ K+  +G                   MNAVMNKL EKEKVSNTK L
Sbjct: 174 CDCEEHCSPFITKKEKLSMNGETEREKSEIGGINDEEINIMNAVMNKLLEKEKVSNTKHL 233

Query: 235 EKGQDSFKSPDALPLNECEVDSATDDDDDG---LIINIETKKSKAALSGSHELERIMENP 291
            K  DSF+S   +  NECEVDSATDD DD    LI NI TKK+KAAL+G+ ELERIME+ 
Sbjct: 234 GKKHDSFESLSVIHSNECEVDSATDDGDDDDDDLITNIATKKNKAALTGTEELERIMESQ 293

Query: 292 ESWSNKTRIAKEEPKESMLQVQKRSDDNHNKVKKRKPLPELESESNGCVSTTPGSKSNTK 351
           E WSNKT IA+EEP    ++ QKRS  N NKVKKRK L + ESESNG  S+TP  KS  +
Sbjct: 294 E-WSNKTNIAEEEP----VEAQKRSKSNSNKVKKRKSLSKSESESNGVASSTPVGKSKMQ 348

Query: 352 TLPDELGSGAHP----------AKVSWIQKSSWKELLGQGGSAAFSASLILPKPDSGIDQ 401
           TL DE+GSGA P          AKVSW QKSSW+EL+G+GG+A+FSASLI PK DS  DQ
Sbjct: 349 TLLDEVGSGAKPTEPEYDFGESAKVSWSQKSSWRELVGKGGNASFSASLISPKFDSADDQ 408

Query: 402 QRXXXXXXXXXXXXXXXXXXXXXXYRGSEPTNTQVIQESAEPQPTNKRVIKELAKAQPTD 461
           Q                       Y  SEPTNT+VI+E ++ QPT+ +VI+E  +AQ T+
Sbjct: 409 QNSDGSYTSSSTNDETEDMESDE-YPESEPTNTKVIEEPSKSQPTDTQVIEEHGEAQATN 467

Query: 462 KGVINEPAEVQPINKGVMNEPTEAHPTHKQVTNELAETQHNVAPNNTGRGASWLRKQSWT 521
             VI EPAE  P N  V+ EP EA PT+KQV  E AETQHN+AP  TG G SW +K+SWT
Sbjct: 468 TRVIEEPAESLPTNAQVIEEPAEAQPTNKQVITEPAETQHNIAPKITGTGVSWWQKKSWT 527

Query: 522 QLVSPSNNSFSISQILPDITFPEPIFKEPVVDPANSDDCKHGGVN 566
           QL + +N+ FS+SQ+LPDI+FPE   KEP++ PA S +CKH G +
Sbjct: 528 QLANENNSPFSLSQLLPDISFPEQTAKEPILYPAGSSECKHNGAD 572