Miyakogusa Predicted Gene
- Lj6g3v1094850.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1094850.1 Non Characterized Hit- tr|I1MHT6|I1MHT6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56638
PE,87.76,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; NONSENSE-MEDIATED MRNA
DECAY PROTEIN 2 (UP-FRAMESHIFT SUPPRESSOR,CUFF.59123.1
(1208 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g048630.1 | regulator of nonsense transcripts-like protein... 1183 0.0
>Medtr2g048630.1 | regulator of nonsense transcripts-like protein | HC
| chr2:21440873-21453740 | 20130731
Length = 1275
Score = 1183 bits (3061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/687 (83%), Positives = 602/687 (87%), Gaps = 3/687 (0%)
Query: 484 LRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFSVPRTSLELLP 543
LRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFSVPRTSLELL
Sbjct: 467 LRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFSVPRTSLELLA 526
Query: 544 YYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIKNIRFIGELCKFKIAP 603
YYSRMVATLSTCMKDVSS+LLQMLEEEFNFLINKKDQMNIETKI+NIRFIGELCKFKIAP
Sbjct: 527 YYSRMVATLSTCMKDVSSLLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAP 586
Query: 604 AGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNL 663
AGLVFSCLKACLDDF+HHNIDVACNLLETCGRFLYRSPETSIRM NMLEILMRLKNVKNL
Sbjct: 587 AGLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETSIRMGNMLEILMRLKNVKNL 646
Query: 664 DPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPW 723
DPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDK+TIEHVLRQLRKLPW
Sbjct: 647 DPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKTTIEHVLRQLRKLPW 706
Query: 724 SECEPYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRIGLELNDY 783
S+CE YLLKCFMKV+KGKYGQIHL+ASLAAGLSRYHDEFAVAIVDEVLEEIRIGLELNDY
Sbjct: 707 SDCELYLLKCFMKVHKGKYGQIHLVASLAAGLSRYHDEFAVAIVDEVLEEIRIGLELNDY 766
Query: 784 GMQQRRVAYMRFLGELYNYKHADSSVIFETLYLILVYGHGTPEQDVLDPPEDFFRIRLII 843
GMQQRRVA MRFLGELYNYKHADSSVIFETLYLI+V+GHGTPEQDVLDPPEDFFRIRLII
Sbjct: 767 GMQQRRVANMRFLGELYNYKHADSSVIFETLYLIIVFGHGTPEQDVLDPPEDFFRIRLII 826
Query: 844 TLLETCGHYFDHGSSKRKLDRFLIHFQRYILSKGALPLDVEFDLQDLFVDLRPNMVRYSS 903
TLLETCGHYFDHGSSK+KLDRFL+HFQRYILSKGALPLDVEFDLQDLF DLRP+MVRY+S
Sbjct: 827 TLLETCGHYFDHGSSKKKLDRFLMHFQRYILSKGALPLDVEFDLQDLFADLRPSMVRYTS 886
Query: 904 IXXXXXXXXXXXXHDRIVSADKASGEKQS--EKPPRRTTSSMVVGNGQSIDNGAEDNGVQ 961
+ HDRIVS DKAS EK S +KP R+TS+ +V NGQ+ DNG E+NGVQ
Sbjct: 887 VDEVNAALVELEEHDRIVSTDKASSEKHSHTDKPLSRSTSTTMVSNGQNNDNGIEENGVQ 946
Query: 962 DDVNDGEADSGSDVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVRQK 1021
D+VN+GE DSGSDVI VHVRQK
Sbjct: 947 DNVNEGEHDSGSDVI-DAEGHDDEELDEENHDDGGETEDDDEDEDGPASDDEDEVHVRQK 1005
Query: 1022 VTEVDPLEEASFDQELKAVLQESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGTGG 1081
VTEVDPLEEA FDQELKAV+QESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGTGG
Sbjct: 1006 VTEVDPLEEADFDQELKAVVQESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGTGG 1065
Query: 1082 ESGDEALDEDTDGNKEVQVKVLVKRGNKQQTKQMYIPRNSSLVQSTXXXXXXXXXXXXDI 1141
ESGDEALDEDT +KEVQVKVLVKRGNKQQTKQMYIP +SSLVQST DI
Sbjct: 1066 ESGDEALDEDTGVSKEVQVKVLVKRGNKQQTKQMYIPSDSSLVQSTKQKEAAELQEKEDI 1125
Query: 1142 KRLVLEYNDREEEELNGLGTQPTNWMQ 1168
KRL+LEYNDREEEELNGLG QP+NWMQ
Sbjct: 1126 KRLILEYNDREEEELNGLGAQPSNWMQ 1152
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/428 (85%), Positives = 393/428 (91%), Gaps = 1/428 (0%)
Query: 1 MDQHEDECRTGGESNSKQDDEEAVAHLEEIKKSIEAKIALRQSNLNPDRPDSGFLRTLDS 60
MDQ+EDECR GE+N+KQDDEEAVAHLEEIKKSIEAK+ALRQ+NLNP+RPD+GF RTLDS
Sbjct: 1 MDQNEDECRNEGETNNKQDDEEAVAHLEEIKKSIEAKMALRQTNLNPERPDTGFFRTLDS 60
Query: 61 SIKRNTAVIKKLKQINEELREALMDELRTVNMSKFVSEAVAAICDAKLRSSDIQAAVQIC 120
SIKRNTAVIKKLKQINEE RE+LMD+LR+VN+SKFVSEAVAAIC+AKLRSSDIQAAVQIC
Sbjct: 61 SIKRNTAVIKKLKQINEEQRESLMDDLRSVNLSKFVSEAVAAICEAKLRSSDIQAAVQIC 120
Query: 121 SLLHQRYKDFAPSLIQGLLKIFSPGKPGDESDTDKNXXXXXXXXXXXXXXXXFFVGVIED 180
SLLHQRYKDF P+LIQGLLK+FSPGK GDE+D+DKN FFVGVIED
Sbjct: 121 SLLHQRYKDFVPTLIQGLLKVFSPGKSGDETDSDKNLKAMKKRSSLKLLLELFFVGVIED 180
Query: 181 GAIFITIIKDLTSVEQLKDRDATQTSLTLLSSFARQGRIFLGLSVNGPEIHEEFFKGLAI 240
G IFI+IIKDLTSVEQLKDR+ATQTSLTLLSSFARQGRIFLGLSV GPEIHEEF KGL I
Sbjct: 181 GGIFISIIKDLTSVEQLKDREATQTSLTLLSSFARQGRIFLGLSVTGPEIHEEFMKGLNI 240
Query: 241 TADQKKVLRKACYAFYDAAAELLQSEHSSLRVMEHENSKILNAKGELSEENVASYEKLRK 300
TADQKKV+RKACY+FYD AAELLQSEHSSLR+MEHENSKILNAKGELSEEN++SYEKLRK
Sbjct: 241 TADQKKVIRKACYSFYDTAAELLQSEHSSLRLMEHENSKILNAKGELSEENLSSYEKLRK 300
Query: 301 SYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAISSASGKDSSVVEPIWDDEDTR 360
SYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEA+SSA+GKDSSVVEPIWDDEDTR
Sbjct: 301 SYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAVSSAAGKDSSVVEPIWDDEDTR 360
Query: 361 AFYECLPDLRAFVPAVLLGETEPKSNEQSVKSQDQSTEILPESDKGQ-TTRESGEVSTDP 419
AFYECLPDLRAFVPAVLLGETEPK NEQSVK QDQSTEILPESDK Q T +SGEVST+
Sbjct: 361 AFYECLPDLRAFVPAVLLGETEPKVNEQSVKGQDQSTEILPESDKSQLVTLDSGEVSTES 420
Query: 420 SALPEGES 427
S LPEGES
Sbjct: 421 SVLPEGES 428