Miyakogusa Predicted Gene
- Lj6g3v1093440.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1093440.1 Non Characterized Hit- tr|I1P1Y6|I1P1Y6_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,25.99,0.000000000009,seg,NULL; CGI-12 PROTEIN-RELATED,NULL;
Mitochondrial termination factor repeats,Mitochodrial
transcr,gene.g65726.t1.1
(362 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g049780.1 | transcription termination factor family protei... 443 e-124
Medtr5g041630.1 | transcription termination factor family protei... 217 1e-56
Medtr2g067230.1 | transcription termination factor family protei... 203 3e-52
Medtr7g081270.1 | transcription termination factor family protei... 146 2e-35
Medtr2g034600.1 | transcription termination factor family protei... 102 5e-22
Medtr2g034600.2 | transcription termination factor family protei... 102 6e-22
Medtr2g034600.3 | transcription termination factor family protei... 102 7e-22
Medtr4g070060.1 | transcription termination factor family protei... 98 1e-20
Medtr4g084630.1 | transcription termination factor family protei... 96 8e-20
Medtr6g003960.1 | transcription termination factor family protei... 94 2e-19
Medtr5g068860.1 | transcription termination factor family protei... 94 2e-19
Medtr1g115415.1 | transcription termination factor family protei... 88 1e-17
Medtr5g094610.1 | transcription termination factor family protei... 87 3e-17
Medtr0320s0040.1 | ARP2/3 complex ARPC3, 21 kDa subunit | LC | s... 61 1e-09
Medtr3g092710.1 | plastid transcriptionally active 15 protein | ... 58 1e-08
Medtr8g105560.1 | transcription termination factor family protei... 50 3e-06
Medtr2g061450.1 | transcription termination factor family protei... 49 5e-06
>Medtr2g049780.1 | transcription termination factor family protein |
HC | chr2:22364848-22363786 | 20130731
Length = 313
Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/262 (82%), Positives = 241/262 (91%), Gaps = 1/262 (0%)
Query: 101 QNHPLYTPTTHAKLSLQFKEKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSK 160
QNHPLYTPT + KLSLQFKEKILCLEVMG+D+G+ALSQNP+L TAT+ESI SII+FL+SK
Sbjct: 53 QNHPLYTPT-NEKLSLQFKEKILCLEVMGIDSGKALSQNPNLHTATLESIHSIITFLVSK 111
Query: 161 GIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVR 220
GIQHKDLPRIFGMCPKILTS IKT+LNPVFDFL+HDLKVPD++FRKVI KCPRLLTSSV
Sbjct: 112 GIQHKDLPRIFGMCPKILTSSIKTDLNPVFDFLIHDLKVPDHSFRKVIKKCPRLLTSSVV 171
Query: 221 DQLKPALFYLKRLGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLR 280
DQLKPALFYL RLG +DL LAYQD VLLVSNVERT+IPKL++LE+LGF+K EAR +VLR
Sbjct: 172 DQLKPALFYLNRLGLRDLEALAYQDCVLLVSNVERTIIPKLKHLESLGFTKEEARCMVLR 231
Query: 281 CPALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINL 340
CPAL TFSIENNF+PKFEYF+ EM KLEELKEFPQYF+FSLENRIK RHMEVV+ GINL
Sbjct: 232 CPALLTFSIENNFQPKFEYFSVEMKGKLEELKEFPQYFSFSLENRIKVRHMEVVESGINL 291
Query: 341 PLSVMLKSTDEEFRELIKQGDG 362
PLS+MLKSTD+EFRELIK+G G
Sbjct: 292 PLSLMLKSTDDEFRELIKKGAG 313
>Medtr5g041630.1 | transcription termination factor family protein |
HC | chr5:18278077-18276642 | 20130731
Length = 308
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 168/250 (67%)
Query: 109 TTHAKLSLQFKEKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLP 168
TT L F+EK+L LE + V+ +A QNP+LR+ + +++S+ L S GI +
Sbjct: 48 TTTPNRGLIFREKVLYLEKLKVNPEKAFKQNPNLRSCPLRTLKSVEQCLSSIGIHRSQMG 107
Query: 169 RIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALF 228
RI M P++LT + +++ P+ DFLL+++++P ++ K I +CPRLL SSV ++L+PAL
Sbjct: 108 RILDMLPELLTCEPYSDIYPLLDFLLNEVEIPYHDVHKSILRCPRLLVSSVENRLRPALC 167
Query: 229 YLKRLGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFS 288
+L+ LGF L Q ++LLVS+VE TL+PK+E+L LGF++ E ++V+R P L TFS
Sbjct: 168 FLRELGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLMGLGFTRVEVSNMVVRSPGLLTFS 227
Query: 289 IENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKS 348
++ N PKFE+F EM + ELK FPQYF+FSLE RIKPRH +V+ G++L L ML+
Sbjct: 228 VDKNLAPKFEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHAMLVRLGLSLSLQEMLQI 287
Query: 349 TDEEFRELIK 358
+D + L++
Sbjct: 288 SDGDLIRLLE 297
>Medtr2g067230.1 | transcription termination factor family protein |
HC | chr2:28121064-28123893 | 20130731
Length = 328
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 159/237 (67%), Gaps = 5/237 (2%)
Query: 118 FKEKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKI 177
F++K+L LE +G+D+ + +P L TA+++ I+S + ++ + R+ GMCP+I
Sbjct: 69 FQKKVLYLESIGIDSFSLIENHPKLVTASLDDIKSTVKYITGMDFSSIEFRRLVGMCPEI 128
Query: 178 LTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKD 237
LT+ + +++ PVF FL +++V N + VIN+ PRL+ +V QL+P +++L+ +G ++
Sbjct: 129 LTTKV-SDIIPVFTFLHREVRVIGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIGIEE 187
Query: 238 LTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKF 297
+ + + LL +VE IP++EY +N+GFS+ + S+ R P LF +SI+NN EPK+
Sbjct: 188 VN----KHTHLLSCSVEDKFIPRIEYFKNIGFSRRDTTSMFRRFPQLFCYSIKNNLEPKY 243
Query: 298 EYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFR 354
YF EMGR L+E+KEFP YF+FSLENRIKPRH V+ G+ PL ++LK+++ F+
Sbjct: 244 NYFVVEMGRDLKEVKEFPHYFSFSLENRIKPRHKRCVEMGVCFPLPLLLKTSEVTFQ 300
>Medtr7g081270.1 | transcription termination factor family protein |
HC | chr7:31009132-31008262 | 20130731
Length = 284
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 127/211 (60%), Gaps = 4/211 (1%)
Query: 146 TMESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIK-TELNPVFDFLLHDLKVPDYNF 204
T+ I +II+FL S D+PR+ P + T+ I T L+PVF FL DL +
Sbjct: 70 TINHILTIITFLKSHSFTEADIPRLVHHSPHLFTTSISPTSLSPVFTFLASDLLASVEDS 129
Query: 205 RKVINKCPRLLTSSVRDQLKPALFYLKR-LGFKDLTPLAYQDSVLLVSNVERTLIPKLEY 263
+I +CP LL + V LKP L +L+ +G +L +++ LL + VE+ + ++ +
Sbjct: 130 HGLILRCPNLLFTDVNHILKPTLHFLREEVGVSNLNRPTNRNAHLLNTRVEKMRM-RVRF 188
Query: 264 LENL-GFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSL 322
LE + GF+ EAR++ R PA+ + +ENN PKF Y EM R++EELK+FPQ+F FSL
Sbjct: 189 LEEVVGFTYEEARNVCARLPAILGYDVENNLWPKFVYLVKEMEREVEELKKFPQFFGFSL 248
Query: 323 ENRIKPRHMEVVQCGINLPLSVMLKSTDEEF 353
+ RI PRH+ + + G+ +PL+ ML DE+F
Sbjct: 249 DKRIVPRHLHLKERGVRIPLNRMLMWGDEKF 279
>Medtr2g034600.1 | transcription termination factor family protein |
HC | chr2:13233091-13236843 | 20130731
Length = 557
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 15/242 (6%)
Query: 119 KEKILCLEVMGVDAGRALSQNPDLRTATM-ESIQSIISFLLSKGIQHKDLPRIFGMCPKI 177
KEKI+ + L++ P L ++ ++++ + F S G+ + ++ P +
Sbjct: 322 KEKIIII----------LTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPAL 371
Query: 178 LTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKD 237
LT + ++N DFL + V + N K++ +CP +++ SV D L+P Y + LG D
Sbjct: 372 LTYSTQ-KINESLDFL-REFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGV-D 428
Query: 238 LTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKF 297
+ L + ++E + P ++ G++ E ++ R L+TFS+ N PK+
Sbjct: 429 VGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTMEEIGIMIKRYGMLYTFSLTENLMPKW 488
Query: 298 EYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELI 357
+YF M EL +FPQ+F +SLE RIKPR+ V G+ L L+ +L + F E++
Sbjct: 489 DYFL-TMDYPKSELVKFPQFFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNFEEIL 547
Query: 358 KQ 359
++
Sbjct: 548 RK 549
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 7/198 (3%)
Query: 154 ISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPR 213
I++L+ G+ + I P ++ ++ PV +F L +L VP ++ K P+
Sbjct: 276 IAYLMELGMNTDQVRSIMRRFPAFAYYSLEGKIKPVVEFFL-ELGVPKEKIIIILTKRPQ 334
Query: 214 LLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSK 271
L S+ LKP + + + LG + + Y+ LL + ++ + L++L G S+
Sbjct: 335 LCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQK-INESLDFLREFGVSE 393
Query: 272 GEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELK-EFPQYFAFSLENRIKPRH 330
++ RCP + ++S+E+N P YF +G + L PQ F S+E IKP
Sbjct: 394 ENIGKILTRCPTIVSYSVEDNLRPTAMYFRS-LGVDVGLLLFNCPQNFGLSIEANIKPVT 452
Query: 331 MEVVQCGINL-PLSVMLK 347
++ G + + +M+K
Sbjct: 453 QFFLERGYTMEEIGIMIK 470
>Medtr2g034600.2 | transcription termination factor family protein |
HC | chr2:13233091-13236856 | 20130731
Length = 561
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 15/242 (6%)
Query: 119 KEKILCLEVMGVDAGRALSQNPDLRTATM-ESIQSIISFLLSKGIQHKDLPRIFGMCPKI 177
KEKI+ + L++ P L ++ ++++ + F S G+ + ++ P +
Sbjct: 326 KEKIIII----------LTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPAL 375
Query: 178 LTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKD 237
LT + ++N DFL + V + N K++ +CP +++ SV D L+P Y + LG D
Sbjct: 376 LTYSTQ-KINESLDFL-REFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGV-D 432
Query: 238 LTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKF 297
+ L + ++E + P ++ G++ E ++ R L+TFS+ N PK+
Sbjct: 433 VGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTMEEIGIMIKRYGMLYTFSLTENLMPKW 492
Query: 298 EYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELI 357
+YF M EL +FPQ+F +SLE RIKPR+ V G+ L L+ +L + F E++
Sbjct: 493 DYFL-TMDYPKSELVKFPQFFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNFEEIL 551
Query: 358 KQ 359
++
Sbjct: 552 RK 553
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 7/198 (3%)
Query: 154 ISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPR 213
I++L+ G+ + I P ++ ++ PV +F L +L VP ++ K P+
Sbjct: 280 IAYLMELGMNTDQVRSIMRRFPAFAYYSLEGKIKPVVEFFL-ELGVPKEKIIIILTKRPQ 338
Query: 214 LLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSK 271
L S+ LKP + + + LG + + Y+ LL + ++ + L++L G S+
Sbjct: 339 LCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQK-INESLDFLREFGVSE 397
Query: 272 GEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELK-EFPQYFAFSLENRIKPRH 330
++ RCP + ++S+E+N P YF +G + L PQ F S+E IKP
Sbjct: 398 ENIGKILTRCPTIVSYSVEDNLRPTAMYFRS-LGVDVGLLLFNCPQNFGLSIEANIKPVT 456
Query: 331 MEVVQCGINL-PLSVMLK 347
++ G + + +M+K
Sbjct: 457 QFFLERGYTMEEIGIMIK 474
>Medtr2g034600.3 | transcription termination factor family protein |
HC | chr2:13233799-13236843 | 20130731
Length = 496
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 15/242 (6%)
Query: 119 KEKILCLEVMGVDAGRALSQNPDLRTATM-ESIQSIISFLLSKGIQHKDLPRIFGMCPKI 177
KEKI+ + L++ P L ++ ++++ + F S G+ + ++ P +
Sbjct: 261 KEKIIII----------LTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPAL 310
Query: 178 LTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKD 237
LT + ++N DFL + V + N K++ +CP +++ SV D L+P Y + LG D
Sbjct: 311 LTYSTQ-KINESLDFL-REFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGV-D 367
Query: 238 LTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKF 297
+ L + ++E + P ++ G++ E ++ R L+TFS+ N PK+
Sbjct: 368 VGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTMEEIGIMIKRYGMLYTFSLTENLMPKW 427
Query: 298 EYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELI 357
+YF M EL +FPQ+F +SLE RIKPR+ V G+ L L+ +L + F E++
Sbjct: 428 DYFL-TMDYPKSELVKFPQFFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNFEEIL 486
Query: 358 KQ 359
++
Sbjct: 487 RK 488
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 7/198 (3%)
Query: 154 ISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPR 213
I++L+ G+ + I P ++ ++ PV +F L +L VP ++ K P+
Sbjct: 215 IAYLMELGMNTDQVRSIMRRFPAFAYYSLEGKIKPVVEFFL-ELGVPKEKIIIILTKRPQ 273
Query: 214 LLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSK 271
L S+ LKP + + + LG + + Y+ LL + ++ + L++L G S+
Sbjct: 274 LCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQK-INESLDFLREFGVSE 332
Query: 272 GEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELK-EFPQYFAFSLENRIKPRH 330
++ RCP + ++S+E+N P YF +G + L PQ F S+E IKP
Sbjct: 333 ENIGKILTRCPTIVSYSVEDNLRPTAMYFRS-LGVDVGLLLFNCPQNFGLSIEANIKPVT 391
Query: 331 MEVVQCGINL-PLSVMLK 347
++ G + + +M+K
Sbjct: 392 QFFLERGYTMEEIGIMIK 409
>Medtr4g070060.1 | transcription termination factor family protein |
HC | chr4:26370303-26365871 | 20130731
Length = 617
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%)
Query: 131 DAGRALSQNPDLRTATMES-IQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPV 189
D G+ L+ P L ++E + ++ +L GI + R+ + P + D++ + P
Sbjct: 361 DVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPK 420
Query: 190 FDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPA-LFYLKRLGF--KDLTPLAYQDS 246
F DL V + K++ K P LLT S+ +++P +F + + G +++ +
Sbjct: 421 VKFF-QDLGVRNDGIAKMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVIALGP 479
Query: 247 VLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGR 306
LL ++ L ++Y +LG + ++ P L ++I+ PK+ Y M R
Sbjct: 480 ELLGCSIVHKLEGNVKYYLSLGIRLQQLGEMIADFPMLLRYNIDV-LRPKYTYLRKTMVR 538
Query: 307 KLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELIK 358
L++ EFP++F++SLE RI PRH +V+ IN+ L ML TDEEF ++K
Sbjct: 539 TLKDAIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNNMVK 590
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 90/194 (46%), Gaps = 6/194 (3%)
Query: 117 QFKEKILCLEVMGVD---AGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGM 173
+ E + LE GV G +S+ P L + ++E +++ + F L G+ KD +
Sbjct: 273 ELDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLEEVKTRVQFYLDMGLDAKDFGTMVFD 332
Query: 174 CPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRL 233
PK L E+N D+ L + + + K++ P+L+ S+ +Q KP + YL
Sbjct: 333 FPKALGHYTLEEMNRKVDY-LKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYY 391
Query: 234 GF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIEN 291
G + + ++ ++E T++PK+++ ++LG ++++ P L T+S+
Sbjct: 392 GITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFFQDLGVRNDGIAKMLVKFPTLLTYSLYK 451
Query: 292 NFEPKFEYFAGEMG 305
P + + G
Sbjct: 452 KIRPVVIFLMTKAG 465
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 9/185 (4%)
Query: 150 IQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVIN 209
+ I+ +L G++ + + + CPK+L+ ++ E+ F L D+ + +F ++
Sbjct: 274 LDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLE-EVKTRVQFYL-DMGLDAKDFGTMVF 331
Query: 210 KCPRLLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLIPKLEYLENL 267
P+ L +++ + YLK G KD+ L L+ ++E P ++YL
Sbjct: 332 DFPKALGHYTLEEMNRKVDYLKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYY 391
Query: 268 GFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRK----LEELKEFPQYFAFSLE 323
G ++ R ++ P +F +E PK ++F ++G + + L +FP +SL
Sbjct: 392 GITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFFQ-DLGVRNDGIAKMLVKFPTLLTYSLY 450
Query: 324 NRIKP 328
+I+P
Sbjct: 451 KKIRP 455
>Medtr4g084630.1 | transcription termination factor family protein |
HC | chr4:32962573-32960937 | 20130731
Length = 332
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 130/250 (52%), Gaps = 10/250 (4%)
Query: 114 LSLQFKEKIL----CLEVMGV---DAGRALSQNPDLRTATMES-IQSIISFLLSKGIQHK 165
L L EKI+ CL + + A+++ P + + ++E + +++F + G+ K
Sbjct: 69 LVLGLNEKIVPMVECLNTLATKPHEVASAIAKFPQILSCSVEEKLCPLLAFFQTLGVPEK 128
Query: 166 DLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKP 225
+ +I + P++++ I+T++ + FL + K++ K P ++ SV +L+P
Sbjct: 129 HIGKILLLNPRLISYSIETKMTEIVKFLASVGLDKNGMIGKIMVKDPYIMGYSVDKRLRP 188
Query: 226 ALFYLKRLGFK--DLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPA 283
+LK +G DL LA +L +V++ L+ ++L+N GF + LV+ P
Sbjct: 189 TSEFLKSIGLTEHDLQVLALNFPSILSRDVDKVLVHNYDFLKNCGFQGRQIVDLVVGYPP 248
Query: 284 LFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLS 343
+ S+ N+ EP+ ++ MGR+++E+ ++P +F L+ ++ RH + + +N LS
Sbjct: 249 ILIKSVRNSLEPRIKFLVDVMGREVDEIIDYPCFFRHGLKKKLVSRHKLLKKRNLNCSLS 308
Query: 344 VMLKSTDEEF 353
ML +++F
Sbjct: 309 EMLDCNEKKF 318
>Medtr6g003960.1 | transcription termination factor family protein |
HC | chr6:35948-29152 | 20130731
Length = 609
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 4/222 (1%)
Query: 134 RALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFL 193
RA+ + P L + ++ ++ G+Q K L ++ P++L + L V F
Sbjct: 368 RAIKRQPQLLGCSTSKLKLMVDQFAELGVQRKKLYQVITRSPQLLLQKPEDFLQVVMFF- 426
Query: 194 LHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGF-KDLTPLAYQD-SVLLVS 251
++ N +++ +CP + +S+ L+ + +L R+ K PL + LLVS
Sbjct: 427 -ENMGFDKENIGRILARCPEIFATSISKTLQSKIEFLSRIEVSKAYIPLVIRKYPELLVS 485
Query: 252 NVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEEL 311
++ +TL ++ Y +G S+ E +V + L +SI+ PK E+ M R + ++
Sbjct: 486 DINKTLPQRIVYFMKVGLSEKEIALMVRKFSPLLGYSIKEVLMPKLEFLVNSMKRPVRDV 545
Query: 312 KEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEF 353
+P+YF++SLE +IKPR+ + I L ML DEEF
Sbjct: 546 VRYPRYFSYSLEKKIKPRYRVLKGRNIECSLKDMLAKNDEEF 587
>Medtr5g068860.1 | transcription termination factor family protein |
HC | chr5:29165945-29163659 | 20130731
Length = 530
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 41/264 (15%)
Query: 131 DAGRALSQNPDLRTATMESIQSI-ISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPV 189
D R L + P++ +E S +++L+ G+ ++L I P+IL + + P
Sbjct: 223 DIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRELGGILTRFPEILGMRVGRVIKPF 282
Query: 190 FDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFK------------- 236
++L L +P ++I P +L + +++KP + L+ +
Sbjct: 283 VEYL-ESLGIPRLAIARLIETQPYILGFDLDEKVKPNVKSLEEFNVRETSLASIIAQYPD 341
Query: 237 ----DLTP-LAYQDSVL--------------------LVSNVERTLIPKLEYLENLGFSK 271
DL P LA + SVL +VS ++ +++L++ GFS
Sbjct: 342 IIGTDLEPKLADKRSVLNSVLDLDAEDFGLIIEKMPQVVSLSSTPMLKHVDFLKDCGFSV 401
Query: 272 GEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHM 331
+ R +++ CP L +I + + F+YF EM R LE+L EFP +F + LE+ IKPRH
Sbjct: 402 DQMRKMIVGCPQLLALNI-DIMKLSFDYFQSEMERPLEDLVEFPAFFTYGLESTIKPRHN 460
Query: 332 EVVQCGINLPLSVMLKSTDEEFRE 355
V + G+ L+ ML +DE+F +
Sbjct: 461 MVTKKGLKCSLAWMLNCSDEKFEQ 484
>Medtr1g115415.1 | transcription termination factor family protein |
HC | chr1:52109146-52107512 | 20130731
Length = 501
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 45/298 (15%)
Query: 106 YTPTTHAKLSLQFKEKILCLEVMGV---DAGRALSQNPDLRTATMESIQSI-ISFLLSKG 161
Y HA + ++ I L + V D G L + P+L +E S +++L+S G
Sbjct: 163 YPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIG 222
Query: 162 IQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRD 221
+ +D+ + P L + T + P+ D+L+ +L +P +++ K LL + +
Sbjct: 223 VNPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLV-NLGLPKRILARMLEKRAYLLGYDLEE 281
Query: 222 QLKPALFYLKRLGFKD----------------------------------LTPLAYQDSV 247
+KP + L G + + P + V
Sbjct: 282 TVKPNVDCLISFGLRKEYLPSVIAQYPLIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVV 341
Query: 248 ----LLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGE 303
+VS + ++ +E+L + S+V++CP L +E + + +F E
Sbjct: 342 EKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLVALRVEL-MKNSYYFFKSE 400
Query: 304 MGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRELIKQGD 361
MGR ++EL EFP+YF +SLE+RIKPR+ + GI L+ ML +D+ F E + QG+
Sbjct: 401 MGRPVKELVEFPEYFTYSLESRIKPRYQRLKTKGIKCSLNWMLNCSDQRFEERL-QGN 457
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Query: 142 LRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFLLH-DLKVP 200
L + +++ ++ +L GI L P++L + + EL PV FL D++
Sbjct: 131 LGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQVLHASVIVELAPVIKFLRGLDVEKD 190
Query: 201 DYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGF--KDLTPLAYQDSVLLVSNVERTLI 258
D F V+ K P LL + + ++ YL +G +D+ P+ Q L V +
Sbjct: 191 DIGF--VLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIK 248
Query: 259 PKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFE 298
P ++YL NLG K ++ + L + +E +P +
Sbjct: 249 PLVDYLVNLGLPKRILARMLEKRAYLLGYDLEETVKPNVD 288
>Medtr5g094610.1 | transcription termination factor family protein |
HC | chr5:41344877-41348219 | 20130731
Length = 503
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 121/246 (49%), Gaps = 12/246 (4%)
Query: 119 KEKILCLEVMGV---DAGRALSQNPDLRTATMES-IQSIISFLLSKGIQHKDLPRIFGMC 174
+E+I L +GV D R L + P + T+E+ +++ ++FL+ G+ + +I
Sbjct: 227 QERIDYLMSLGVKHKDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSTKIGQIIAST 286
Query: 175 PKILTSDIKTELNPVFDFLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKR-- 232
P + + ++ L P +L+ ++ + + + KVI P++L + L +L +
Sbjct: 287 PSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRLMFLNKEL 346
Query: 233 -LGFKDLTPLAYQDSVLLVSNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIEN 291
+ + + + LL +++ L+P++ +L ++G + ++ + + S+E
Sbjct: 347 DAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEA 406
Query: 292 NFEPKFEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGIN----LPLSVMLK 347
N +PK+ Y E+ +++ L ++P Y + SL+ RI+PRH +V PL ++
Sbjct: 407 NLKPKYLYLVNELHNEVQTLTKYPMYLSLSLDQRIRPRHKFLVSLKKAPKGPFPLGSLV- 465
Query: 348 STDEEF 353
TDE F
Sbjct: 466 PTDESF 471
>Medtr0320s0040.1 | ARP2/3 complex ARPC3, 21 kDa subunit | LC |
scaffold0320:12511-20285 | 20130731
Length = 225
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 118 FKEKILCLEVMGVDAGRALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKI 177
F++K+L LE +G+D+ + +P L TA+++ I+S + ++ + R+ GMCP+I
Sbjct: 48 FQKKVLYLESIGIDSFSLIENHPKLVTASLDDIKSTVKYITGMDFSTIEFRRLVGMCPEI 107
Query: 178 LTSDIKTELNPVFDFLLHDLKVPDYNFRKV 207
LT+ + +++ PVF FL +++V N + V
Sbjct: 108 LTTKV-SDIIPVFTFLHREVRVNGSNIKHV 136
>Medtr3g092710.1 | plastid transcriptionally active 15 protein | HC
| chr3:42360298-42362077 | 20130731
Length = 506
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 15/205 (7%)
Query: 133 GRALSQNPDLRTATMESIQSIISFLLS-KGIQHKDLPRIFGMCPKILTSDIKTELNPVFD 191
G+ L++ P + ++E ++ I FL + + + +I + P I TS + +L P
Sbjct: 271 GKVLNRFPIILNYSVEHLEEHIKFLRCFADLDDQQIFKIVLVFPAIFTSSRERKLRPRIQ 330
Query: 192 FLLHDLKVPDYNFRKVINKCPRLLTSSVRDQLKPALFYLKRLGFKDLTPLAYQDSVLLVS 251
FL D F K++ K L+ S R L L L ++G+K Y+ L V+
Sbjct: 331 FLKECGLDADEIF-KLLTKAALFLSISFRSNLAYKLGVLVKIGYK------YRTKELAVA 383
Query: 252 NVERTLIP------KLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMG 305
T I + N GFS + ++ + P + + + E K +Y EM
Sbjct: 384 IAASTRISCENMQKMVSLFLNYGFSLEDIFAMSKKHPQILQYH-HASLEKKMDYMIEEMN 442
Query: 306 RKLEELKEFPQYFAFSLENRIKPRH 330
R ++EL +FP Y + L++RIK R+
Sbjct: 443 RDIQELLDFPAYLGYKLDDRIKHRY 467
>Medtr8g105560.1 | transcription termination factor family protein |
HC | chr8:44520352-44517998 | 20130731
Length = 560
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 297 FEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQCGINLPLSVMLKSTDEEFRE 355
+ +F E+GR ++EL EFP+YF +SLE+RIK + + G+ L+ ML +D+ F E
Sbjct: 429 YYFFKSEIGRPVKELVEFPEYFTYSLESRIKTKGLR--SKGMKCSLNWMLSCSDQRFEE 485
>Medtr2g061450.1 | transcription termination factor family protein |
HC | chr2:26047796-26046155 | 20130731
Length = 432
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 91/200 (45%), Gaps = 11/200 (5%)
Query: 134 RALSQNPDLRTATMESIQSIISFLLSKGIQHKDLPRIFGMCPKILTSDIKTELNPVFDFL 193
R L + P I +I+FL+ + ++ R+ + PK+L I+ L P L
Sbjct: 153 RVLEEFPSAVVMGETQIVGVINFLMEFRVPKDEIDRVVRLFPKVLGFSIEDRLKP----L 208
Query: 194 LHDLKVPDYNFRKV---INKCPRLLTSSVRDQLKPALFYLKRLGFKDLTPLAYQDSVLLV 250
+H+L+ ++ R+V + + PR+L + + L L+ L ++ L+
Sbjct: 209 IHELRGLGFSSREVRAEVVRDPRILGMEI-GEFSRCLKLLQSLKCREAIKERIFGEGLVR 267
Query: 251 SNVERTLIPKLEYLENLGFSKGEARSLVLRCPALFTFSIENNFEPKFEYFAGEMGRKLEE 310
+ E L +++ L G + +A ++ + P L + +E + E K E+ M ++
Sbjct: 268 ACFEVKL--RVDCLCGRGLIRRDALKVLWKEPRLIAYDLE-DIEKKIEFLIQRMKYGVDC 324
Query: 311 LKEFPQYFAFSLENRIKPRH 330
L E P+Y + E +I PR+
Sbjct: 325 LHEVPEYLGVNFEKQIVPRY 344