Miyakogusa Predicted Gene

Lj6g3v1089080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1089080.1 CUFF.59049.1
         (499 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g116470.1 | hypothetical protein | HC | chr4:48250980-4824...   437   e-122

>Medtr4g116470.1 | hypothetical protein | HC |
           chr4:48250980-48248965 | 20130731
          Length = 485

 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/492 (52%), Positives = 321/492 (65%), Gaps = 57/492 (11%)

Query: 48  MVPSNAPKTYYSSIHNSITSLCKTILPVGFNKRHRLVSAEH---KLQSDNLKWQQDTLHQ 104
           MV +N   TYYS++H+SITS CKTILP  F KR  L SAEH   KLQSDNLKWQQD+ HQ
Sbjct: 1   MVYTNYTPTYYSTLHDSITSFCKTILPFNFKKR-SLPSAEHRLSKLQSDNLKWQQDSFHQ 59

Query: 105 LLNLMALHRDDILPEAEVSAFKAHLLETLLACPHPQRDYPLILRDKIGFLQELLDAKCIS 164
           +LNLM LH++ I+ E EV AFK HLLETL+A P P++++P+I+RDK+ FLQELL AKCIS
Sbjct: 60  VLNLMGLHKEGIVAETEVKAFKTHLLETLIASP-PEQEHPIIIRDKLLFLQELLYAKCIS 118

Query: 165 EGEYHSSRRPLLQRLAAQGGEIGGRDVMVVAEAQDREQNSEEEWSVIDLKDDQCLMXX-- 222
           E +YHSS+RPL+QRLA QG +I  RDV +  +++D ++NSEEEWSVIDLKDD+ LM    
Sbjct: 119 EEDYHSSKRPLVQRLAVQGAKIDARDV-IAGKSKDLKENSEEEWSVIDLKDDKSLMNKEN 177

Query: 223 -----XXXXXXXXXXXXXXXGAFSFGSSNKHGKHSKEKSIFDSPSLQMHSAHSKIPSSTI 277
                                 F F SSNKH     EKSIFDSP L  H   S   +  +
Sbjct: 178 LNSKGKSSHGSALKQIKGAASVFGFVSSNKH-----EKSIFDSPPL--HKQQSDGKTILM 230

Query: 278 YANNETRHAKDSPLWDGPENFKRKPFGILFHREKKEGHSGGDQVLEPEGRTTKKQWGFKG 337
             +   + AK+S    G  + KRKPF  LFH+E KEG+ GG +V +  G++ KKQWGF G
Sbjct: 231 EESEPPKPAKES----GGGSSKRKPFRTLFHKEHKEGNGGGSEVEQRGGKSVKKQWGFDG 286

Query: 338 FEKLRKNDLDD-ETAPLSLLMEN-------------------------KLHLHSDVSPSE 371
            +K ++N+LDD ETAPL L   +                         K  LHSD +PS+
Sbjct: 287 LKKWKRNELDDDETAPLPLNQRSDSEAFSASSQSFARAVGDGPDTKLIKKKLHSDGAPSD 346

Query: 372 FSISDKVSEDKINKEVSIIQTELRSTNTNAKFSNDQIQAISTEHPENKPELKKHFPKSPC 431
           F I DKV  + I KE+S IQTEL STN N KFSNDQ++AIST  P +K +LK +FPKS C
Sbjct: 347 FFI-DKVLGNNIKKELSRIQTELSSTNPNLKFSNDQMEAISTRIPVDKADLKNYFPKSWC 405

Query: 432 DRYGSVVLDAVKE----NVGEKENMRNHAEEKYES--TMGWTTFEDDENLHPNLFAHQDN 485
           D+YG VVLD VK+    +V E EN R+ + EK+ S  +  WTTF+DDEN+HPNLF H DN
Sbjct: 406 DKYGDVVLDVVKKEFKNHVEEMENKRSISREKHLSGNSKRWTTFDDDENVHPNLFGHHDN 465

Query: 486 SLRSSSINPFSQ 497
           S+RSS+INPFSQ
Sbjct: 466 SVRSSNINPFSQ 477