Miyakogusa Predicted Gene

Lj6g3v1088800.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1088800.1 Non Characterized Hit- tr|B9SC14|B9SC14_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,50,6e-19,HemD-like,Tetrapyrrole biosynthesis, uroporphyrinogen III
synthase; seg,NULL,CUFF.59016.1
         (106 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g052525.1 | uroporphyrinogen III synthase | HC | chr1:2138...   141   2e-34

>Medtr1g052525.1 | uroporphyrinogen III synthase | HC |
           chr1:21384805-21383883 | 20130731
          Length = 294

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 81/111 (72%), Gaps = 5/111 (4%)

Query: 1   MALTTAMSTGGTTAHNPTVAFTTPPNYAARLSHLLTVNTFKPLWCPTLIIQPTPSNLTPF 60
           MALTT ++ GG T HNP+VAFTTP NYA+RLSHLLTVN FKPLWCPTL IQPTPS  +P+
Sbjct: 1   MALTTMLNGGGNTIHNPSVAFTTPQNYASRLSHLLTVNAFKPLWCPTLTIQPTPSTFSPY 60

Query: 61  -----LDPFSAIAFTSRTAIQSFIHATEXXXXXXXXXXXXTFTVAALGKDA 106
                LDPFSAIAFTSRTAIQSF  A              TFTVAALGKD+
Sbjct: 61  LSPHSLDPFSAIAFTSRTAIQSFHQAISSLSHPPLSVDGPTFTVAALGKDS 111