Miyakogusa Predicted Gene

Lj6g3v1078320.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1078320.3 tr|A9T0I3|A9T0I3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_234584,25.75,3e-18,Reticulon,Reticulon; seg,NULL;
UNKNOWN PROTEIN,NULL; RETICULON,Reticulon,CUFF.58986.3
         (409 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g460800.1 | reticulon-like protein B2 | HC | chr2:25088304...   517   e-147
Medtr2g460800.2 | reticulon-like protein B2 | HC | chr2:25088385...   386   e-107
Medtr4g078740.1 | reticulon-like protein B2 | HC | chr4:30430555...   144   2e-34
Medtr2g090620.1 | reticulon-like protein B2 | HC | chr2:38774000...   140   2e-33

>Medtr2g460800.1 | reticulon-like protein B2 | HC |
           chr2:25088304-25093407 | 20130731
          Length = 576

 Score =  517 bits (1332), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/390 (68%), Positives = 296/390 (75%), Gaps = 33/390 (8%)

Query: 19  SFDVKEIS-IPESKVVKE--PENSKVSVNEPDKKMVISXXXXXXXXXXXXXXXXXXXXXX 75
           SFDVKEIS IPESKVV E   EN KV VNEP+KK+V++                      
Sbjct: 210 SFDVKEISSIPESKVVIENQQENDKVDVNEPEKKIVLNESEKKVVTN------------- 256

Query: 76  XXXXIESEPKKVVSAHMRFHHRNERKPVSVPVALKPSPTVRRNSTIYQNFSEPKS--IPK 133
                E+E KKVV+A+MRFHH+NER+PVSVP+ +K SPT+RRNS IYQNFS+P S  IPK
Sbjct: 257 -----EAEQKKVVNANMRFHHKNERRPVSVPLVVKQSPTIRRNSKIYQNFSKPNSGSIPK 311

Query: 134 AEEYYGDSVPPCFPQTQSKLQSLVDLIMWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLI 193
            EE         FPQTQ+KLQSLVDLIMWRD SR                YAKDINLSLI
Sbjct: 312 EEER------SSFPQTQNKLQSLVDLIMWRDVSRSAFVFGIGTFLIVSSSYAKDINLSLI 365

Query: 194 SVISYIGLVYLAVIFLYRALICRGVIEVEDSNYVLREDDAIWMLRLILPYLNEFLSRLKA 253
           S +SY+GLVYLAVIFLYR+LICRGVI+VEDSNYV+RE DAIWML+L+LPYLNEFLS+LKA
Sbjct: 366 SAMSYVGLVYLAVIFLYRSLICRGVIDVEDSNYVVREQDAIWMLKLVLPYLNEFLSKLKA 425

Query: 254 LFSGDPGTTIKLAVLLFVLARCGSFITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFW 313
           LFSGDPGTT+KLAVLLFVLARCGSFIT+WKMAK GFFGVF VPKICSSYSAQLTAYANFW
Sbjct: 426 LFSGDPGTTMKLAVLLFVLARCGSFITLWKMAKIGFFGVFIVPKICSSYSAQLTAYANFW 485

Query: 314 IRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYLVRXXXXX 373
           +RRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHY+VR     
Sbjct: 486 VRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYMVRDEWVE 545

Query: 374 XXXXXXXTWQEPVGVRQKQGRAANIVGTNK 403
                   W+E   VRQKQ    N V TNK
Sbjct: 546 DETGCDEAWEEE-PVRQKQ---RNFVATNK 571


>Medtr2g460800.2 | reticulon-like protein B2 | HC |
           chr2:25088385-25091137 | 20130731
          Length = 494

 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/299 (67%), Positives = 225/299 (75%), Gaps = 29/299 (9%)

Query: 19  SFDVKEIS-IPESKVVKE--PENSKVSVNEPDKKMVISXXXXXXXXXXXXXXXXXXXXXX 75
           SFDVKEIS IPESKVV E   EN KV VNEP+KK+V++                      
Sbjct: 210 SFDVKEISSIPESKVVIENQQENDKVDVNEPEKKIVLNESEKKVVTN------------- 256

Query: 76  XXXXIESEPKKVVSAHMRFHHRNERKPVSVPVALKPSPTVRRNSTIYQNFSEPKS--IPK 133
                E+E KKVV+A+MRFHH+NER+PVSVP+ +K SPT+RRNS IYQNFS+P S  IPK
Sbjct: 257 -----EAEQKKVVNANMRFHHKNERRPVSVPLVVKQSPTIRRNSKIYQNFSKPNSGSIPK 311

Query: 134 AEEYYGDSVPPCFPQTQSKLQSLVDLIMWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLI 193
            EE         FPQTQ+KLQSLVDLIMWRD SR                YAKDINLSLI
Sbjct: 312 EEER------SSFPQTQNKLQSLVDLIMWRDVSRSAFVFGIGTFLIVSSSYAKDINLSLI 365

Query: 194 SVISYIGLVYLAVIFLYRALICRGVIEVEDSNYVLREDDAIWMLRLILPYLNEFLSRLKA 253
           S +SY+GLVYLAVIFLYR+LICRGVI+VEDSNYV+RE DAIWML+L+LPYLNEFLS+LKA
Sbjct: 366 SAMSYVGLVYLAVIFLYRSLICRGVIDVEDSNYVVREQDAIWMLKLVLPYLNEFLSKLKA 425

Query: 254 LFSGDPGTTIKLAVLLFVLARCGSFITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANF 312
           LFSGDPGTT+KLAVLLFVLARCGSFIT+WKMAK GFFGVF VPKICSSYSAQLTAY  F
Sbjct: 426 LFSGDPGTTMKLAVLLFVLARCGSFITLWKMAKIGFFGVFIVPKICSSYSAQLTAYGKF 484


>Medtr4g078740.1 | reticulon-like protein B2 | HC |
           chr4:30430555-30433018 | 20130731
          Length = 313

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 136/259 (52%), Gaps = 14/259 (5%)

Query: 110 KPSPTVRRNSTIYQNFSEPKSI--PKAEEYYGDSVPPCFPQTQSKLQSLV-DLIMWRDFS 166
           K    +RR   ++  F+  +    PKA E  G  +         ++  L+ +LIMW+D +
Sbjct: 20  KGREDIRRIDLVWYLFNHRQETFSPKAGEENGGDL--------DRIGMLITELIMWKDVT 71

Query: 167 RXXXXXXXXXXXXXXXXYAKDINLSLISVISYIGLVYLAVIFLYRALICRGVIEVEDSNY 226
           +                + K IN S+ S IS + ++ LAV F   ++  RG  + +   Y
Sbjct: 72  KSTLWFGFGSLCFLSTCFTKGINFSIFSAISQLAILILAVSFFSNSVCQRG--QAKGRGY 129

Query: 227 V-LREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKLAVLLFVLARCGSFITIWKMA 285
           V L++DD + + +LILP LN   S+   LFSG+P  T+K+A LL + A  G  ITIW+++
Sbjct: 130 VKLKDDDILRLAKLILPALNFAFSKTTELFSGEPSMTLKVAPLLLLGAEYGHLITIWRLS 189

Query: 286 KFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVV 345
             GFF  F+VPK+ S YSAQ+         R  D W++C+HKK V +      WNLS++ 
Sbjct: 190 AIGFFVNFSVPKLYSCYSAQINQRVECLKLRLLDTWNACSHKKIVVVSALVTFWNLSTIR 249

Query: 346 ARIWAVFVLFVAFRYYQQH 364
            RI   F+L V  +Y+QQ+
Sbjct: 250 TRICTAFLLIVLLKYFQQN 268


>Medtr2g090620.1 | reticulon-like protein B2 | HC |
           chr2:38774000-38777144 | 20130731
          Length = 394

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 120/213 (56%), Gaps = 5/213 (2%)

Query: 154 QSLVDLIMWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLISVISYIGLVYLAVIFLYRAL 213
           Q + DL+MW+D ++                +++  + S++S +S + ++ L V F   ++
Sbjct: 137 QLVSDLVMWKDVTKSTLWFGLGCICLLSSCFSQGFSFSIVSALSQLAILILGVSFFSNSI 196

Query: 214 I-CRGVIEVEDSNYV-LREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKLAVLLFV 271
              +GV   E+ +YV ++EDD + + +LILP LN  +SR + LFSG+P  T+K+   L +
Sbjct: 197 SQSKGV---EEKSYVKIKEDDVLRLAKLILPALNFAISRTRVLFSGEPSMTLKVIPFLLL 253

Query: 272 LARCGSFITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVA 331
            A  G  ITI ++   GFF  FT+PKI S Y++Q+   A        D W +CTHKK + 
Sbjct: 254 GAEFGHLITIRRLCVTGFFVSFTIPKIYSCYTSQIDKRAEGLKLLLFDTWCACTHKKKLM 313

Query: 332 LGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQH 364
           + +    WNLSS+  RI+  F+L V FRY +QH
Sbjct: 314 VSVLLTFWNLSSIKTRIFTAFMLLVLFRYLKQH 346