Miyakogusa Predicted Gene

Lj6g3v1077810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1077810.1 Non Characterized Hit- tr|H9MAB2|H9MAB2_PINLA
Uncharacterized protein (Fragment) OS=Pinus
lambertian,40.87,1e-16,APO,APO domain; seg,NULL; coiled-coil,NULL;
UNCHARACTERIZED,NULL; EUKARYOTIC TRANSLATION INITIATION ,CUFF.58949.1
         (442 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g088390.1 | APO RNA-binding protein | HC | chr2:37254350-3...   581   e-166
Medtr2g067610.1 | APO RNA-binding protein | HC | chr2:28298590-2...   540   e-153
Medtr6g059930.1 | APO RNA-binding protein | HC | chr6:20583169-2...   291   1e-78
Medtr6g059930.2 | APO RNA-binding protein | HC | chr6:20582557-2...   290   2e-78
Medtr5g072520.1 | APO RNA-binding protein | HC | chr5:30879261-3...   247   2e-65
Medtr2g088750.1 | APO RNA-binding protein | HC | chr2:37418951-3...   201   2e-51
Medtr1g054885.1 | photosystem one accumulation protein | HC | ch...    75   1e-13

>Medtr2g088390.1 | APO RNA-binding protein | HC |
           chr2:37254350-37249092 | 20130731
          Length = 447

 Score =  581 bits (1497), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 279/370 (75%), Positives = 311/370 (84%), Gaps = 2/370 (0%)

Query: 73  RNEVPQNADFPRRYSKKEKKPFPVPXXXXXXXXXXXXXXKMKNEPQKPLSLSAPKNGLLV 132
           RNEVPQNADF R YS+KEKKPFPVP              KMK+EP++   + APKNGLLV
Sbjct: 80  RNEVPQNADFHRHYSRKEKKPFPVPIVELRRAARERIK-KMKDEPRRK-PMPAPKNGLLV 137

Query: 133 KKLIPTAYKVYNSRITLINNXXXXXXXXXXHACGYCSEIHVGPVGHPFKSCRGTQANIRK 192
           K LIP AY VYN+RITLINN          HACG+CSEIHVGPVGHPFKSC+GTQ+NIRK
Sbjct: 138 KNLIPEAYDVYNARITLINNLKKLLKVVPVHACGWCSEIHVGPVGHPFKSCKGTQSNIRK 197

Query: 193 GLHEWTNAHFEDILTPVEAYHLSDRLGKRITHEERFSIPRIPAVVELCIQAGVEIPEYPT 252
           G+HEWTNAH EDIL P++A+HL DRLGKRITHE+RFSIPRIPAVVELCIQAGV+I E+PT
Sbjct: 198 GIHEWTNAHVEDILIPIDAFHLYDRLGKRITHEQRFSIPRIPAVVELCIQAGVKIREFPT 257

Query: 253 XXXXXXXXXXXXXEYVDADESELPDQMPENPPKLLLTEIPDSEIVAPVDKEEIVQLAEET 312
                        E+VDADESELPD++P+NP + L+ EIPDS+IVAPV+KEE+V LAEET
Sbjct: 258 KRRRKPIIRIGKKEFVDADESELPDEVPDNPTQPLIAEIPDSDIVAPVNKEEVVHLAEET 317

Query: 313 LQAWERMRKGAKRLMGMYRVRVCGYCPEIHVGPQGHKAQNCGAHKHQQRNGQHGWQSSVL 372
           LQAWE+MRKG KRLM MY VRVCGYCPEIHVGP GHKAQNCGAHKHQQRNGQHGWQS+VL
Sbjct: 318 LQAWEQMRKGTKRLMRMYHVRVCGYCPEIHVGPSGHKAQNCGAHKHQQRNGQHGWQSAVL 377

Query: 373 NDLIPPRFVWHVPDVNGPPLQRELREFYGQAPAVVEMCIQAGAALPEQYKSTMRLDVGIP 432
           +DLIPPRFVWHVPDVNGPPL+REL+ FYGQAPAVVEMCIQAGAALPEQYKSTMRLDVGIP
Sbjct: 378 DDLIPPRFVWHVPDVNGPPLERELKNFYGQAPAVVEMCIQAGAALPEQYKSTMRLDVGIP 437

Query: 433 STMQEAEMVV 442
           ST++EAEMVV
Sbjct: 438 STLREAEMVV 447


>Medtr2g067610.1 | APO RNA-binding protein | HC |
           chr2:28298590-28300383 | 20130731
          Length = 329

 Score =  540 bits (1390), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/330 (77%), Positives = 287/330 (86%), Gaps = 1/330 (0%)

Query: 113 MKNEPQKPLSLSAPKNGLLVKKLIPTAYKVYNSRITLINNXXXXXXXXXXHACGYCSEIH 172
           MK+EP++   + APKNGLLVK LIP AY VYN+RITLINN          HACG+CSEIH
Sbjct: 1   MKDEPRRK-PMPAPKNGLLVKNLIPEAYDVYNARITLINNLKKLLKVVPVHACGWCSEIH 59

Query: 173 VGPVGHPFKSCRGTQANIRKGLHEWTNAHFEDILTPVEAYHLSDRLGKRITHEERFSIPR 232
           VGPVGHPFKSC+GTQ+NIRKG+HEWTNAH EDIL P++A+HL DRLGKRITHE+RFSIPR
Sbjct: 60  VGPVGHPFKSCKGTQSNIRKGIHEWTNAHVEDILIPIDAFHLYDRLGKRITHEQRFSIPR 119

Query: 233 IPAVVELCIQAGVEIPEYPTXXXXXXXXXXXXXEYVDADESELPDQMPENPPKLLLTEIP 292
           IPAVVELCIQAGV+I E+PT             E+VDADESELPD++P+NP + L+ EIP
Sbjct: 120 IPAVVELCIQAGVKIREFPTKRRRKPIIRIGKKEFVDADESELPDEVPDNPTQPLIAEIP 179

Query: 293 DSEIVAPVDKEEIVQLAEETLQAWERMRKGAKRLMGMYRVRVCGYCPEIHVGPQGHKAQN 352
           DS+IVAPV+KEE+V LAEETLQAWE+MRKG KRLM MY VRVCGYCPEIHVGP GHKAQN
Sbjct: 180 DSDIVAPVNKEEVVHLAEETLQAWEQMRKGTKRLMRMYHVRVCGYCPEIHVGPSGHKAQN 239

Query: 353 CGAHKHQQRNGQHGWQSSVLNDLIPPRFVWHVPDVNGPPLQRELREFYGQAPAVVEMCIQ 412
           CGAHKHQQRNGQHGWQS+VL+DLIPPRFVWHVPDVNGPPL+REL+ FYGQAPAVVEMCIQ
Sbjct: 240 CGAHKHQQRNGQHGWQSAVLDDLIPPRFVWHVPDVNGPPLERELKNFYGQAPAVVEMCIQ 299

Query: 413 AGAALPEQYKSTMRLDVGIPSTMQEAEMVV 442
           AGAALPEQYKSTMRLDVGIPST++EAEMVV
Sbjct: 300 AGAALPEQYKSTMRLDVGIPSTLREAEMVV 329


>Medtr6g059930.1 | APO RNA-binding protein | HC |
           chr6:20583169-20579100 | 20130731
          Length = 451

 Score =  291 bits (744), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/321 (43%), Positives = 192/321 (59%), Gaps = 3/321 (0%)

Query: 123 LSAPKNGLLVKKLIPTAYKVYNSRITLINNXXXXXXXXXXHACGYCSEIHVGPVGHPFKS 182
           L  PKNGLLV  L+P AY+V+++   LI            + C  CSE+HV   GH    
Sbjct: 131 LEPPKNGLLVPDLVPVAYEVFDAWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILD 190

Query: 183 CRGTQANIRKGLHEWTNAHFEDILTPVEAYHLSDRLGKRITHEERFSIPRIPAVVELCIQ 242
           C G  ++ R   H W   +  DIL P+E+YHL D  GKRI H+ RF   RIPAVVELCIQ
Sbjct: 191 CEGRTSSTRHSSHAWVRGNVNDILVPIESYHLFDPFGKRIMHDTRFEYDRIPAVVELCIQ 250

Query: 243 AGVEIPEYPTXXXXXXXXXXXXXEYVDADESELPD--QMPENPPKLLLTEIPDSEIVAPV 300
           AGV+IPEYP+                     E P   +  E    +        E   P 
Sbjct: 251 AGVDIPEYPSRRRTNPIRMVGRRVLDRGGHLEEPKPLRTAEFSSVIDFDTYRACERFPPP 310

Query: 301 DKEEIVQLAEETLQAWERMRKGAKRLMGMYRVRVCGYCPEIHVGPQGHKAQNCGAHKHQQ 360
              ++ ++A+ET+ A++ +RKG ++LM  Y V+ CGYC E+HVGP GH A+ CG+ KHQ 
Sbjct: 311 PLSDVPKIAQETIDAYQTVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQW 370

Query: 361 RNGQHGWQSSVLNDLIPPRFVWHVPDVNGPPLQRELREFYGQAPAVVEMCIQAGAALPEQ 420
           R+G+HGWQ + L++++PP +VWHV D NGPP++  L+ +YG+APAVVE+C+QAGA +P +
Sbjct: 371 RDGKHGWQDATLDEVLPPNYVWHVRDTNGPPIKAALKRYYGKAPAVVEVCVQAGARIPAE 430

Query: 421 YKSTMRLDVGIPSTMQEAEMV 441
           YK  MRLD+ IP T  EA M+
Sbjct: 431 YKPLMRLDIVIPDT-DEAGMI 450


>Medtr6g059930.2 | APO RNA-binding protein | HC |
           chr6:20582557-20579088 | 20130731
          Length = 419

 Score =  290 bits (743), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/322 (43%), Positives = 192/322 (59%), Gaps = 3/322 (0%)

Query: 123 LSAPKNGLLVKKLIPTAYKVYNSRITLINNXXXXXXXXXXHACGYCSEIHVGPVGHPFKS 182
           L  PKNGLLV  L+P AY+V+++   LI            + C  CSE+HV   GH    
Sbjct: 99  LEPPKNGLLVPDLVPVAYEVFDAWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILD 158

Query: 183 CRGTQANIRKGLHEWTNAHFEDILTPVEAYHLSDRLGKRITHEERFSIPRIPAVVELCIQ 242
           C G  ++ R   H W   +  DIL P+E+YHL D  GKRI H+ RF   RIPAVVELCIQ
Sbjct: 159 CEGRTSSTRHSSHAWVRGNVNDILVPIESYHLFDPFGKRIMHDTRFEYDRIPAVVELCIQ 218

Query: 243 AGVEIPEYPTXXXXXXXXXXXXXEYVDADESELPD--QMPENPPKLLLTEIPDSEIVAPV 300
           AGV+IPEYP+                     E P   +  E    +        E   P 
Sbjct: 219 AGVDIPEYPSRRRTNPIRMVGRRVLDRGGHLEEPKPLRTAEFSSVIDFDTYRACERFPPP 278

Query: 301 DKEEIVQLAEETLQAWERMRKGAKRLMGMYRVRVCGYCPEIHVGPQGHKAQNCGAHKHQQ 360
              ++ ++A+ET+ A++ +RKG ++LM  Y V+ CGYC E+HVGP GH A+ CG+ KHQ 
Sbjct: 279 PLSDVPKIAQETIDAYQTVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQW 338

Query: 361 RNGQHGWQSSVLNDLIPPRFVWHVPDVNGPPLQRELREFYGQAPAVVEMCIQAGAALPEQ 420
           R+G+HGWQ + L++++PP +VWHV D NGPP++  L+ +YG+APAVVE+C+QAGA +P +
Sbjct: 339 RDGKHGWQDATLDEVLPPNYVWHVRDTNGPPIKAALKRYYGKAPAVVEVCVQAGARIPAE 398

Query: 421 YKSTMRLDVGIPSTMQEAEMVV 442
           YK  MRLD+ IP T  EA M+ 
Sbjct: 399 YKPLMRLDIVIPDT-DEAGMIA 419


>Medtr5g072520.1 | APO RNA-binding protein | HC |
           chr5:30879261-30876789 | 20130731
          Length = 442

 Score =  247 bits (630), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/288 (40%), Positives = 173/288 (60%), Gaps = 22/288 (7%)

Query: 167 YCSEIHVGPVGHPFKSCRGTQANIRKGLHEWTNAHFEDILTPVEAYHLSDRLGK-RITHE 225
           +C+E+H+G VGH  ++C G ++ +R   H W     +D++   + +HL DR+GK R+ H+
Sbjct: 1   FCNEVHIGYVGHEIRTCTGPKSWLRSATHVWKRGGVQDVVCFPKCFHLYDRVGKPRVGHD 60

Query: 226 ERFSIPRIPAVVELCIQAGVEIPEYPTXXXXX-------------------XXXXXXXXE 266
           ERFS+PRIPA++ELCIQAG+++ ++PT                                E
Sbjct: 61  ERFSVPRIPAIIELCIQAGLDLKKFPTKRRTKPVYCIEGRIADFESVAEDNEIERNSSFE 120

Query: 267 YVD--ADESELPDQMPENPPKLLLTEIPDSEIVAPVDKEEIVQLAEETLQAWERMRKGAK 324
            V+   D S +  +  E    LL  +I   + ++  ++ ++  L++  L +W  M  GAK
Sbjct: 121 NVNPLTDSSYMLKEPVEKVQSLLENKISHMDQLSDEERNKLRDLSKHALDSWFEMISGAK 180

Query: 325 RLMGMYRVRVCGYCPEIHVGPQGHKAQNCGAHKHQQRNGQHGWQSSVLNDLIPPRFVWHV 384
           ++M  Y V  CGYCPE+ VGP+GHK + C A KHQ RNG H WQ + L+D++ P FVWHV
Sbjct: 181 KIMEKYVVNTCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATLDDIVGPNFVWHV 240

Query: 385 PDVNGPPLQRELREFYGQAPAVVEMCIQAGAALPEQYKSTMRLDVGIP 432
            D+NGP L   ++ +YG+APAVVE+C+ AGA +P+QYKS MRLDV  P
Sbjct: 241 EDLNGPALNNNIKRYYGKAPAVVELCVHAGAPVPDQYKSMMRLDVVSP 288



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 58/116 (50%)

Query: 134 KLIPTAYKVYNSRITLINNXXXXXXXXXXHACGYCSEIHVGPVGHPFKSCRGTQANIRKG 193
           KL   +    +S   +I+           + CGYC E+ VGP GH  + C+ ++   R G
Sbjct: 160 KLRDLSKHALDSWFEMISGAKKIMEKYVVNTCGYCPEVQVGPKGHKLRMCKASKHQSRNG 219

Query: 194 LHEWTNAHFEDILTPVEAYHLSDRLGKRITHEERFSIPRIPAVVELCIQAGVEIPE 249
           LH W  A  +DI+ P   +H+ D  G  + +  +    + PAVVELC+ AG  +P+
Sbjct: 220 LHAWQEATLDDIVGPNFVWHVEDLNGPALNNNIKRYYGKAPAVVELCVHAGAPVPD 275


>Medtr2g088750.1 | APO RNA-binding protein | HC |
           chr2:37418951-37422309 | 20130731
          Length = 344

 Score =  201 bits (510), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 154/296 (52%), Gaps = 27/296 (9%)

Query: 132 VKKLIPTAYKVYNSRITLINNXXXXXXXXXXHACGYCSEIHVGPVGHPFKSCRGTQANIR 191
           V+ +IP A +V  +R  LI+            AC +C EI++G  GH   +CRG +   +
Sbjct: 55  VRAMIPVANEVLLARNVLIHGVSTLINSFPLMACKFCPEIYIGEQGHLIPTCRGYKRRAK 114

Query: 192 KGLHEWTNAHFEDILTPVEAYHLSDRLGKRITHEERFSIPRIPAVVELCIQAGVEIPEYP 251
             +HEW      DIL PVE +HL++     I H++RF   RI AVVELC QAG ++P   
Sbjct: 115 NRVHEWVKGGLNDILVPVETFHLNNMFQNVIRHDQRFDFDRIAAVVELCWQAGADVPHDE 174

Query: 252 TXXXXXXXXXXXXXEYVDADESELPDQMPENPPKLLLTEIPDSEIVAPVDKEEIVQLAEE 311
                           VD  ES  P+ +                            +A++
Sbjct: 175 NLSPSSSNLEAANGN-VDGFESLSPNVL--------------------------AVVAKK 207

Query: 312 TLQAWERMRKGAKRLMGMYRVRVCGYCPEIHVGPQGHKAQNCGAHKHQQRNGQHGWQSSV 371
           TL+AW+ +R G ++L+ +Y V+VC YC E+HVGP GHKA+ CG  KH+   G H W  + 
Sbjct: 208 TLEAWDVLRSGVEKLLLVYPVKVCKYCSEVHVGPSGHKARLCGVFKHESWKGAHFWTKAN 267

Query: 372 LNDLIPPRFVWHVPDVNGPPLQRELREFYGQAPAVVEMCIQAGAALPEQYKSTMRL 427
           +++L+PP+ VW     + P L  E R+FYG+ PAV+++C +AG  +P +Y   M++
Sbjct: 268 VDNLVPPKIVWRRRPQDPPVLVNEGRDFYGRVPAVLDLCTKAGVIVPAKYNVLMKV 323


>Medtr1g054885.1 | photosystem one accumulation protein | HC |
           chr1:24065884-24068179 | 20130731
          Length = 82

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 361 RNGQHGWQSSVLNDLIPPRFVWHVPDVN-GPPLQRELREFYGQAPAVVEMCIQAGAALPE 419
           R+GQH WQ + +ND +PP +V+H+ D   G PL  EL+ +YG  PAVVE+  QAGA + +
Sbjct: 2   RDGQHEWQEATINDFVPPVYVYHIRDQQPGKPLVNELKRYYGMLPAVVELFSQAGAPVEK 61

Query: 420 QYKSTMRLDVGIPSTMQEAEMV 441
            Y  TMR DV +P   +E  +V
Sbjct: 62  IYGHTMR-DVVVPDMDEEKWVV 82