Miyakogusa Predicted Gene

Lj6g3v1077660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1077660.1 Non Characterized Hit- tr|I1KDE5|I1KDE5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,86.8,0,seg,NULL; no
description,Signal recognition particle, SRP54 subunit, helical
bundle; no description,,CUFF.58953.1
         (586 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130770.1 | signal recognition particle receptor protein, ...   830   0.0  
Medtr7g104890.2 | signal recognition particle 54 kDa protein | H...    90   8e-18
Medtr7g104890.1 | signal recognition particle 54 kDa protein | H...    89   1e-17
Medtr4g010050.1 | signal recognition particle 54 kDa protein | H...    85   2e-16
Medtr2g104050.1 | signal recognition particle 54 kDa protein | H...    82   1e-15
Medtr8g032340.1 | signal recognition particle receptor FtsY | HC...    54   5e-07

>Medtr4g130770.1 | signal recognition particle receptor protein,
           putative | HC | chr4:54489810-54494349 | 20130731
          Length = 631

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/598 (74%), Positives = 481/598 (80%), Gaps = 18/598 (3%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASFNYDAPGASYTLK 60
           MLEQLLIFTRGGLILW+C E+GNALKGSPIDTLIRSCLLEERSGA+S+NYDAPGA+Y+LK
Sbjct: 1   MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60

Query: 61  WTFHNELGLVFVAVYQKILHLLYVEDLLAMVKREFSQVYDPTRTAYDGFDETFRQLKMEA 120
           WTFHN+LGLVFVAVYQ+ILHLLYV+DLLA VKREFSQVYDPTRT Y  FDE F+QLK+EA
Sbjct: 61  WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYRDFDEIFKQLKIEA 120

Query: 121 LARAEDLKKSNPXXXXXXXXXXXXXXXXXXXXXXXXS-DGSVKNDGGADGENGKGRKLEN 179
            ARAEDLKKSNP                        S  G +KNDG  DG+NGK +  EN
Sbjct: 121 EARAEDLKKSNPVIVGGNRKQQVTWKGDGSDGKKNGSAGGGLKNDG--DGKNGK-KNSEN 177

Query: 180 GHS----NGN-FVASKDTNMNSVNVNGRENTSSDDVGAFDVNKLQK-LRSKGGKKTDTVA 233
             S    NGN +    +  + +V+VNG+EN S ++ GAFDVN+LQK +R+KGG    T A
Sbjct: 178 DRSAIVNNGNGYNLRSNGVVGNVSVNGKENDSVNN-GAFDVNRLQKKVRNKGGNGKKTDA 236

Query: 234 KASKAEPNKKVTKKNRVWNDAAVPEKKLDFTDHSGEDGD----RNIDFVAPIQGESMMXX 289
             +KAEP KKV KKNRVW++  V E KLDFTDH   DGD    R +D++A  QGESMM  
Sbjct: 237 VVTKAEP-KKVVKKNRVWDEKPV-ETKLDFTDHVDIDGDADKDRKVDYLAKEQGESMMDK 294

Query: 290 XXX-XXXXXXXXXXXXXXAGKNSKPGTKSKGWFSSMFQSIAGKANLEKSDLEPALKALKD 348
                             AGK SKP  K KGWFSSMFQSIAGKANLEKSDLEPALKALKD
Sbjct: 295 DEIFSSDSEDEEDDDDDNAGKKSKPDAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKD 354

Query: 349 RLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDILR 408
           RLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDILR
Sbjct: 355 RLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDILR 414

Query: 409 DVHAAREQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRT 468
           DVHAA+EQRKPY           KSTNLAKVAYWL QHNV+VMMAACDTFRSGAVEQLRT
Sbjct: 415 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQLRT 474

Query: 469 HARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIY 528
           HARRLQIPIFEKGYEKDPA+VAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIY
Sbjct: 475 HARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIY 534

Query: 529 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGILLTKFDTIDDKVG 586
           LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL+TSP PRLIDGILLTKFDTIDDKVG
Sbjct: 535 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVG 592


>Medtr7g104890.2 | signal recognition particle 54 kDa protein | HC |
           chr7:42524740-42517179 | 20130731
          Length = 420

 Score = 89.7 bits (221), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 83/148 (56%), Gaps = 10/148 (6%)

Query: 432 KSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAK 491
           K+T  AK+A +  +   S M+ A D +R  A++QL    +++ +P++  G +  P+ +AK
Sbjct: 46  KTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAK 105

Query: 492 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 551
           +  +EA +   DVV+VDTAGR+Q ++ +M  L  +  + NP  VL V +A+ G +A   +
Sbjct: 106 QGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV 165

Query: 552 SKFNQKLADLATSPNPRLIDGILLTKFD 579
           + FN ++           I G +LTK D
Sbjct: 166 TTFNLEIG----------ITGAILTKLD 183


>Medtr7g104890.1 | signal recognition particle 54 kDa protein | HC |
           chr7:42524740-42517179 | 20130731
          Length = 553

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 83/148 (56%), Gaps = 10/148 (6%)

Query: 432 KSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAK 491
           K+T  AK+A +  +   S M+ A D +R  A++QL    +++ +P++  G +  P+ +AK
Sbjct: 179 KTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAK 238

Query: 492 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 551
           +  +EA +   DVV+VDTAGR+Q ++ +M  L  +  + NP  VL V +A+ G +A   +
Sbjct: 239 QGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV 298

Query: 552 SKFNQKLADLATSPNPRLIDGILLTKFD 579
           + FN ++           I G +LTK D
Sbjct: 299 TTFNLEIG----------ITGAILTKLD 316


>Medtr4g010050.1 | signal recognition particle 54 kDa protein | HC |
           chr4:2207891-2201607 | 20130731
          Length = 496

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 10/148 (6%)

Query: 432 KSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAK 491
           K+T   K A++  +      +   DTFR+GA +QL+ +A + +IP +    E DP  +A 
Sbjct: 114 KTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAV 173

Query: 492 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 551
           E ++   +   D+++VDT+GR +    L   + ++     PDLV+FV ++ +G  A DQ 
Sbjct: 174 EGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQA 233

Query: 552 SKFNQKLADLATSPNPRLIDGILLTKFD 579
             F Q +A          +  +++TK D
Sbjct: 234 QAFKQSVA----------VGAVIITKMD 251


>Medtr2g104050.1 | signal recognition particle 54 kDa protein | HC |
           chr2:44822528-44828469 | 20130731
          Length = 470

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 110/246 (44%), Gaps = 17/246 (6%)

Query: 334 LEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDA 393
           +++  L   L  +   L+  +V  E+   +  ++   +  ++LA+       +Q A+ D 
Sbjct: 23  IDEKALTDCLNEINRALLQSDVRFELIRDMQINIKNIVNLEQLAAGHNKRKIIQQAVFDE 82

Query: 394 LVRILTPRRSIDILRDVHAAREQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNVSVMMA 453
           L R+L P +   + +       + K             K+T   K A+   +      + 
Sbjct: 83  LCRMLNPGKPSFVPK-------REKTSVVMFVGLQGSGKTTTCTKYAHCYQKKGWKPALV 135

Query: 454 ACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSDVVLVDTAGRM 513
             DTFR+GA +QL+ +A + +IP +    E DP  +A E ++       D+++VDT+GR 
Sbjct: 136 CADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKEEDHDLIIVDTSGRH 195

Query: 514 QDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGI 573
           +    L   + +L     PDLV+FV ++ +G  A +Q   F Q +A          +  +
Sbjct: 196 KQEASLFEEMRQLSEATKPDLVIFVMDSSIGQAAFNQAQAFKQIVA----------VGAV 245

Query: 574 LLTKFD 579
           ++TK D
Sbjct: 246 IITKMD 251


>Medtr8g032340.1 | signal recognition particle receptor FtsY | HC |
           chr8:12218070-12210399 | 20130731
          Length = 371

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 30/253 (11%)

Query: 337 SDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVR 396
           SD +  L  L++ L+  +   +I  K+ E++   +   KL S     S ++ A++  ++ 
Sbjct: 94  SDTDKVLDELEEALLVSDFGPKITIKIVENLREDILSGKLKS----GSEIKEALKKNVLD 149

Query: 397 ILTPRRSIDILRDVHAAREQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNVSVMMAACD 456
           +L+ + S   L+  +     RKP            K+T+L K+AY L      +++AA D
Sbjct: 150 LLSNKGSKTELQLGY-----RKPAVIMIVGVNGGGKTTSLGKLAYRLKNGGAKILLAAGD 204

Query: 457 TFRSGAVEQLRTHARRLQIPIFEKGYEKDPA-IVAKEAIQEASRN------GSDVVLVDT 509
           TFR+ A +QL   A R    I     EK  A  V  +A++   R       G  V+    
Sbjct: 205 TFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRRKRARLYISIGVHVIFSGL 264

Query: 510 AGRMQDNEPLM---RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPN 566
               +  E L+   +A++K++    P+ +L V +   G + + Q  +FN+ +        
Sbjct: 265 HTNYRLMEELISCKKAVAKVVA-GAPNEILLVLDGTTGLNMLPQAREFNEVVG------- 316

Query: 567 PRLIDGILLTKFD 579
              + G++LTK D
Sbjct: 317 ---VTGLILTKLD 326