Miyakogusa Predicted Gene

Lj6g3v1077630.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1077630.1 tr|B0CCD4|B0CCD4_ACAM1 Nucleoid-associated
protein AM1_1798 OS=Acaryochloris marina (strain MBIC
110,47,0.000000000000006,YbaB-like,YbaB-like DNA-binding protein; no
description,YbaB-like DNA-binding protein; YbaB_DNA_bd,Y,CUFF.58937.1
         (188 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0380s0040.1 | YbaB/EbfC DNA-binding family protein | HC | s...   283   6e-77
Medtr4g130730.1 | YbaB/EbfC DNA-binding family protein | HC | ch...   225   2e-59

>Medtr0380s0040.1 | YbaB/EbfC DNA-binding family protein | HC |
           scaffold0380:7921-14026 | 20130731
          Length = 188

 Score =  283 bits (724), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 163/192 (84%), Gaps = 8/192 (4%)

Query: 1   MASTVSLPNAIGLCPRNNHTLSSTSHCKLNSSSSIVDMKILP--QSGSRKAGHGQRHLRL 58
           MAS VSL NAIGLC    HT ++ S  KLNS+S+IVD KI    + G +K G  +R  RL
Sbjct: 1   MASMVSLSNAIGLC----HTKNTLSLRKLNSNSNIVDTKIFSGRRRGCKKVGDERRCFRL 56

Query: 59  YGLFGGKKD--GDDSPNKGGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 116
           YGLFGGKKD   DD+P+K G+LGNMQNL+ETVKKAQMVVQVEAVRVQKELAAAEFDGYCE
Sbjct: 57  YGLFGGKKDEKSDDAPSKAGVLGNMQNLFETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 116

Query: 117 GELVKVTLSGNQQPLRTEITEAAMEFGSEKLSLLITEAYKDAHQKSVQAMKERMSDLAQS 176
           GELVKVTLSGNQQPLRTEITEAAME GSEKLSLLITEAYK+AHQ+SVQAMKERM+DLAQS
Sbjct: 117 GELVKVTLSGNQQPLRTEITEAAMELGSEKLSLLITEAYKEAHQRSVQAMKERMNDLAQS 176

Query: 177 LGVPEGINEGMK 188
           LG+P G+ EG+K
Sbjct: 177 LGMPPGLGEGLK 188


>Medtr4g130730.1 | YbaB/EbfC DNA-binding family protein | HC |
           chr4:54468512-54472630 | 20130731
          Length = 191

 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 127/147 (86%), Gaps = 3/147 (2%)

Query: 33  SSIVDMKILPQSGSRKAGHGQRHLRLYGLFGGKKDGDDSPNKGGILG---NMQNLYETVK 89
           +++VDM+++   G +K G   R+ R++ LFGGKKD +   NKGG+LG   NMQNL+ETVK
Sbjct: 34  ANVVDMRLVSPRGLQKVGSNHRNFRVHALFGGKKDNESGDNKGGMLGQLGNMQNLFETVK 93

Query: 90  KAQMVVQVEAVRVQKELAAAEFDGYCEGELVKVTLSGNQQPLRTEITEAAMEFGSEKLSL 149
           KAQ VVQVE+ R+QKELAAAEFDGYCEGEL+KVTLSGNQQP+RT+ITEAAME GSEKLSL
Sbjct: 94  KAQAVVQVESSRIQKELAAAEFDGYCEGELIKVTLSGNQQPVRTQITEAAMELGSEKLSL 153

Query: 150 LITEAYKDAHQKSVQAMKERMSDLAQS 176
           L+TEAYKDAHQKSVQAMKERMSDLAQS
Sbjct: 154 LVTEAYKDAHQKSVQAMKERMSDLAQS 180