Miyakogusa Predicted Gene

Lj6g3v1077560.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1077560.2 tr|Q9FJM4|Q9FJM4_ARATH Emb|CAB79781.1
OS=Arabidopsis thaliana PE=4
SV=1,34.23,0.000000000000006,coiled-coil,NULL,CUFF.58929.2
         (255 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130700.1 | hypothetical protein | HC | chr4:54464551-5446...   288   3e-78
Medtr4g130700.2 | hypothetical protein | HC | chr4:54464188-5446...   213   1e-55

>Medtr4g130700.1 | hypothetical protein | HC |
           chr4:54464551-54461358 | 20130731
          Length = 261

 Score =  288 bits (738), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 161/261 (61%), Positives = 195/261 (74%), Gaps = 7/261 (2%)

Query: 1   MKKMKGVVVSVDSP--VYEDQRTRLRHQSLLQDYEDLLEDTNSMRMKLQAAKQKRLTLSA 58
           MKKMKGV  S++ P  VY D R+ +RHQSLLQDYEDL ++T +MR KL+A KQK+L LSA
Sbjct: 2   MKKMKGVSASMNPPPDVYMDHRSMMRHQSLLQDYEDLNKETEAMRRKLEAVKQKKLILSA 61

Query: 59  EVSFLRKRYKYLLKNPSPKLQPKQDISQPRKLKIQANLIPKGQKYNRKES-MQPPVAPHW 117
           EV FLR+RYKYLLK+P PK QP Q++ +P+KLKI+   I KG+ YNRKES ++P  A   
Sbjct: 62  EVRFLRQRYKYLLKHPLPKPQPNQEVLKPQKLKIKEPKIAKGRNYNRKESTLRPHAASKL 121

Query: 118 NSNGRISNGAEI-NTLQKKAPMFDLNQNARSLSRKDPSFLSSAPP-LDLNHKDMSHSMKE 175
           N   R+ NG  + +TLQK + +FDLNQN RSL++KD SF SSA P LD NHKD   S KE
Sbjct: 122 NPKERVFNGRAVEDTLQKTSHVFDLNQNGRSLNKKDASFHSSAAPVLDSNHKDRVQSGKE 181

Query: 176 PAKKSITPFFDLNQIAREEEELLV-TEPVRIEEPKRITQRDASEEQLNDIMLSVCRNDGS 234
            AKKS+TPFFDLNQI+REEEEL    + + IEE K+  QR  +EEQ+NDI LSVCRN G 
Sbjct: 182 AAKKSVTPFFDLNQISREEEELEGDNQSMWIEEQKKNAQRVVNEEQINDIKLSVCRNIGE 241

Query: 235 GSSRTSVKRKISWQDQVALRV 255
           GSSR   KRKI+WQDQVALRV
Sbjct: 242 GSSRAG-KRKITWQDQVALRV 261


>Medtr4g130700.2 | hypothetical protein | HC |
           chr4:54464188-54461584 | 20130731
          Length = 210

 Score =  213 bits (543), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 118/194 (60%), Positives = 145/194 (74%), Gaps = 5/194 (2%)

Query: 1   MKKMKGVVVSVDSP--VYEDQRTRLRHQSLLQDYEDLLEDTNSMRMKLQAAKQKRLTLSA 58
           MKKMKGV  S++ P  VY D R+ +RHQSLLQDYEDL ++T +MR KL+A KQK+L LSA
Sbjct: 2   MKKMKGVSASMNPPPDVYMDHRSMMRHQSLLQDYEDLNKETEAMRRKLEAVKQKKLILSA 61

Query: 59  EVSFLRKRYKYLLKNPSPKLQPKQDISQPRKLKIQANLIPKGQKYNRKES-MQPPVAPHW 117
           EV FLR+RYKYLLK+P PK QP Q++ +P+KLKI+   I KG+ YNRKES ++P  A   
Sbjct: 62  EVRFLRQRYKYLLKHPLPKPQPNQEVLKPQKLKIKEPKIAKGRNYNRKESTLRPHAASKL 121

Query: 118 NSNGRISNGAEI-NTLQKKAPMFDLNQNARSLSRKDPSFLSSAPP-LDLNHKDMSHSMKE 175
           N   R+ NG  + +TLQK + +FDLNQN RSL++KD SF SSA P LD NHKD   S KE
Sbjct: 122 NPKERVFNGRAVEDTLQKTSHVFDLNQNGRSLNKKDASFHSSAAPVLDSNHKDRVQSGKE 181

Query: 176 PAKKSITPFFDLNQ 189
            AKKS+TPFFDLNQ
Sbjct: 182 AAKKSVTPFFDLNQ 195