Miyakogusa Predicted Gene

Lj6g3v1077540.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1077540.1 tr|B9IMC3|B9IMC3_POPTR Stress-induced hydrophobic
peptide (Fragment) OS=Populus trichocarpa
GN=POPTR,85.19,3e-19,SUBFAMILY NOT NAMED,NULL; HYDROPHOBIC PROTEIN
RCI2 (LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6,CUFF.58928.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130675.1 | low temperature and salt responsive family pro...   136   5e-33
Medtr4g130660.1 | low temperature and salt responsive family pro...   122   7e-29
Medtr7g111380.1 | low temperature and salt responsive family pro...    64   3e-11
Medtr6g033495.1 | low temperature and salt responsive family pro...    61   3e-10
Medtr7g111450.1 | low temperature and salt responsive family pro...    60   6e-10
Medtr7g111350.1 | low temperature and salt responsive family pro...    55   2e-08

>Medtr4g130675.1 | low temperature and salt responsive family
           protein | HC | chr4:54443543-54442328 | 20130731
          Length = 120

 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 62/71 (87%), Positives = 70/71 (98%)

Query: 41  MPNRCEICCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIVYVDQ 100
           MP+RCEICCEIMIAVLLPP+GVC RHGCC+VEFIICLLLTILGY+PGIIYALYAI+++D+
Sbjct: 1   MPSRCEICCEIMIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYLPGIIYALYAIIFIDR 60

Query: 101 DQYFDEYRRPL 111
           DQYFDEYRRPL
Sbjct: 61  DQYFDEYRRPL 71


>Medtr4g130660.1 | low temperature and salt responsive family
           protein | HC | chr4:54437697-54436910 | 20130731
          Length = 76

 Score =  122 bits (306), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 67/73 (91%)

Query: 41  MPNRCEICCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIVYVDQ 100
           MP+ CEI CEI+IAVLLPP+GVC RHGCC+ +F+ICLLLTILGYIPGIIYA+Y I++VD+
Sbjct: 1   MPSTCEIICEILIAVLLPPLGVCLRHGCCTNQFLICLLLTILGYIPGIIYAIYVIIFVDR 60

Query: 101 DQYFDEYRRPLYA 113
           +QYFDE RRPLYA
Sbjct: 61  EQYFDEARRPLYA 73


>Medtr7g111380.1 | low temperature and salt responsive family
          protein | HC | chr7:45717382-45719157 | 20130731
          Length = 54

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 42/48 (87%), Gaps = 1/48 (2%)

Query: 48 CCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAI 95
          C +I++A++LPP+GV  + GC +VEF ICL+LTILGY+PGIIYA+YAI
Sbjct: 6  CIDIILAIILPPLGVFLKFGC-NVEFWICLILTILGYLPGIIYAIYAI 52


>Medtr6g033495.1 | low temperature and salt responsive family
          protein | HC | chr6:10827896-10826852 | 20130731
          Length = 54

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 41/52 (78%), Gaps = 1/52 (1%)

Query: 45 CEICCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIV 96
           E   E+++A+LLPP+GV  R+GC  VEF I ++LT+LGYIPGIIYA+Y +V
Sbjct: 3  SETFVEVILAILLPPIGVFLRYGC-GVEFWIDVVLTLLGYIPGIIYAIYVLV 53


>Medtr7g111450.1 | low temperature and salt responsive family
          protein | HC | chr7:45746017-45746281 | 20130731
          Length = 54

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 40/48 (83%), Gaps = 1/48 (2%)

Query: 48 CCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAI 95
          C +I++A++LPP+GV  + GC  VEF +CL+LT+ GY+PGI+YA+YAI
Sbjct: 6  CIDIIVAIILPPLGVFLKFGC-HVEFWLCLVLTLFGYLPGILYAIYAI 52


>Medtr7g111350.1 | low temperature and salt responsive family
          protein | HC | chr7:45705181-45705463 | 20130731
          Length = 54

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 37/47 (78%), Gaps = 1/47 (2%)

Query: 49 CEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAI 95
           +I++++LLPP+GV  + G   VEF ICL+LT+ GY+PGIIYA+Y I
Sbjct: 7  VDIILSILLPPLGVFLKFGL-EVEFWICLVLTLFGYLPGIIYAIYII 52