Miyakogusa Predicted Gene

Lj6g3v1067110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1067110.1 Non Characterized Hit- tr|I1JJ66|I1JJ66_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.29256 PE,87.84,0,C2H2
and C2HC zinc fingers,NULL; seg,NULL; KIN17 (KIN, ANTIGENIC
DETERMINANT OF RECA PROTEIN HOMOLOG,CUFF.58915.1
         (371 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g092130.1 | DNA/RNA-binding protein Kin17, motif protein |...   620   e-178
Medtr1g038340.2 | DExH-box splicing factor-binding site protein ...    50   2e-06
Medtr1g038340.1 | DExH-box splicing factor-binding site protein ...    50   2e-06

>Medtr5g092130.1 | DNA/RNA-binding protein Kin17, motif protein | HC
           | chr5:40230000-40233671 | 20130731
          Length = 398

 Score =  620 bits (1600), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 304/370 (82%), Positives = 327/370 (88%), Gaps = 1/370 (0%)

Query: 1   MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQVFGQN 60
           MGKN+FLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQ+FGQN
Sbjct: 1   MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQN 60

Query: 61  PTRIIEGYSEEFEKSFLEHMKRSHRFSRIAATVVYNEYINDRHHVHMNSTEWATLTEFVK 120
           PTRIIEGY+EEFE +FLEHMKRSHRFSR+AATVVYNEYINDR+HVHMNSTEWATLTEFVK
Sbjct: 61  PTRIIEGYTEEFETTFLEHMKRSHRFSRVAATVVYNEYINDRNHVHMNSTEWATLTEFVK 120

Query: 121 YLGRTGKCKVDETPKGWFITYIDRDSETLFKERMKNKRIKADMADXXXXXXXXXXXXXXA 180
           YLGRTGKCKV+ETPKGWFITYIDRDSETLFKE+MKNKRIKAD+ D              A
Sbjct: 121 YLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKADLVDEEKQEKEIQKQIERA 180

Query: 181 AQLMQPPNSDPDQP-SLVEPPRELNVEDGVKIGFSLGSLARPGTKEKPEASRVAFDEVGE 239
            Q+MQ  N + DQP S V+  +ELNVEDG KIGFSLGS A+P TKE  +ASR+ FDEV E
Sbjct: 181 EQMMQQSNPESDQPSSQVQTTKELNVEDGTKIGFSLGSSAKPVTKETGDASRIVFDEVDE 240

Query: 240 EKYEEINNGNNLKRKGSGGGKSTLDELMRDEEKKKEKMNRKDYWLHEGTVVKVMSKALAE 299
           EKYEE N  NNLKRK SGGGKS L+E++R+EE+ KEK NRKDYWLHEG VVKVMSK LAE
Sbjct: 241 EKYEERNPKNNLKRKESGGGKSALEEMIREEERIKEKNNRKDYWLHEGIVVKVMSKVLAE 300

Query: 300 KGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSLA 359
           KGYYKQKGVV+KVIDKYVGEIEMLESKHVLRVDQ ELETVIPQVGGRVKIVNGAYRGSLA
Sbjct: 301 KGYYKQKGVVKKVIDKYVGEIEMLESKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSLA 360

Query: 360 RLLGVDTEHF 369
           RLLGVDT+ F
Sbjct: 361 RLLGVDTDRF 370


>Medtr1g038340.2 | DExH-box splicing factor-binding site protein |
           HC | chr1:14166247-14162322 | 20130731
          Length = 385

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 283 WLHEGTVVKVMSKALAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLR-VDQAELETVIP 341
           WL     V+V+S++L     Y +KG V  VI     +I M ES+ +++ V Q  LET IP
Sbjct: 266 WLTSHIRVRVISRSLKGGRLYLKKGEVLDVIGPTTCDISMDESREIIQGVSQDMLETAIP 325

Query: 342 QVGGRVKIVNGAYRGSLARLLGVDTE 367
           + GG V +++G ++G+   L+  D++
Sbjct: 326 RRGGPVLVLSGRHKGAFGSLIERDSD 351


>Medtr1g038340.1 | DExH-box splicing factor-binding site protein |
           HC | chr1:14165870-14163866 | 20130731
          Length = 385

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 283 WLHEGTVVKVMSKALAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLR-VDQAELETVIP 341
           WL     V+V+S++L     Y +KG V  VI     +I M ES+ +++ V Q  LET IP
Sbjct: 266 WLTSHIRVRVISRSLKGGRLYLKKGEVLDVIGPTTCDISMDESREIIQGVSQDMLETAIP 325

Query: 342 QVGGRVKIVNGAYRGSLARLLGVDTE 367
           + GG V +++G ++G+   L+  D++
Sbjct: 326 RRGGPVLVLSGRHKGAFGSLIERDSD 351