Miyakogusa Predicted Gene
- Lj6g3v1052260.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1052260.1 Non Characterized Hit- tr|B9S9Z2|B9S9Z2_RICCO
Glycine-rich RNA-binding protein, putative OS=Ricinus
,55.42,2e-19,RRM,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
rec,CUFF.58840.1
(136 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 174 2e-44
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 94 3e-20
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 94 3e-20
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 94 5e-20
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 93 7e-20
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 93 7e-20
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 91 3e-19
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 6e-18
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 3e-17
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 5e-17
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 83 6e-17
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 3e-16
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 80 4e-16
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 80 4e-16
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 80 8e-16
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 9e-16
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 9e-16
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 3e-15
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 77 4e-15
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 77 4e-15
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 8e-15
Medtr3g080160.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 2e-14
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-13
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 2e-13
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 2e-13
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 3e-13
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 3e-13
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 69 9e-13
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 69 1e-12
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 2e-12
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-12
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-12
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-12
Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 3e-12
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 5e-12
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 67 6e-12
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 6e-12
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 65 1e-11
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 65 2e-11
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 65 3e-11
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 65 3e-11
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-11
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 64 5e-11
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 64 6e-11
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 64 6e-11
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-10
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-10
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 62 1e-10
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-10
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-10
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-10
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 62 2e-10
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-10
Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 3e-10
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 61 3e-10
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 61 4e-10
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 60 4e-10
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-10
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-10
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-10
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-10
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-10
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 60 6e-10
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 7e-10
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 7e-10
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 7e-10
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 59 1e-09
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-09
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 59 2e-09
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 59 2e-09
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 59 2e-09
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 59 2e-09
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 2e-09
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 59 2e-09
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 58 2e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 3e-09
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 58 3e-09
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 58 3e-09
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 3e-09
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 3e-09
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 3e-09
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 3e-09
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 3e-09
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 3e-09
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 3e-09
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 57 4e-09
Medtr3g059000.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 4e-09
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 57 5e-09
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 57 7e-09
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 7e-09
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 7e-09
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 7e-09
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 7e-09
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 8e-09
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 8e-09
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-08
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-08
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-08
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-08
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 56 1e-08
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 56 1e-08
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 56 1e-08
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-08
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-08
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 55 2e-08
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-08
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 55 2e-08
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 54 3e-08
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-08
Medtr3g058990.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-08
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 54 6e-08
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-08
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 8e-08
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 9e-08
Medtr0022s0360.1 | RNA-binding (RRM/RBD/RNP motif) family protei... 53 1e-07
Medtr0022s0360.2 | RNA-binding (RRM/RBD/RNP motif) family protei... 53 1e-07
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 53 1e-07
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 53 1e-07
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 52 1e-07
Medtr8g070990.4 | RNA-binding protein, putative | HC | chr8:3009... 52 1e-07
Medtr8g070990.12 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.10 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.2 | RNA-binding protein, putative | HC | chr8:3009... 52 1e-07
Medtr8g070990.1 | RNA-binding protein, putative | HC | chr8:3009... 52 1e-07
Medtr8g070990.3 | RNA-binding protein, putative | HC | chr8:3009... 52 1e-07
Medtr8g070990.9 | RNA-binding protein, putative | HC | chr8:3009... 52 1e-07
Medtr8g070990.19 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.13 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.24 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.6 | RNA-binding protein, putative | HC | chr8:3009... 52 1e-07
Medtr8g070990.15 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.20 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.8 | RNA-binding protein, putative | HC | chr8:3009... 52 1e-07
Medtr8g070990.22 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.21 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.30 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.18 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.14 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.27 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-07
Medtr8g070990.28 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.29 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.26 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.17 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.23 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.31 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.16 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr8g070990.25 | RNA-binding protein, putative | HC | chr8:300... 52 1e-07
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-07
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 52 2e-07
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 52 2e-07
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 52 2e-07
Medtr6g048060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 52 2e-07
Medtr3g083550.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-07
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 51 3e-07
Medtr8g070990.7 | RNA-binding protein, putative | HC | chr8:3009... 51 3e-07
Medtr8g070990.11 | RNA-binding protein, putative | HC | chr8:300... 51 3e-07
Medtr8g070990.5 | RNA-binding protein, putative | HC | chr8:3009... 51 3e-07
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 4e-07
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 4e-07
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 4e-07
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr1g108290.1 | MKI67 interacting nucleolar phosphoprotein | H... 50 6e-07
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 50 6e-07
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 7e-07
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 9e-07
Medtr4g127330.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 1e-06
Medtr4g127330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 1e-06
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 49 1e-06
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 49 2e-06
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 49 2e-06
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 49 2e-06
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 2e-06
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 48 2e-06
Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC | chr7... 48 3e-06
Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 48 3e-06
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr8g015930.1 | embryo defective 140 protein | HC | chr8:52658... 48 3e-06
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 4e-06
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 4e-06
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 4e-06
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 47 4e-06
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 47 4e-06
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 4e-06
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 4e-06
Medtr4g063557.3 | RNA and export factor-binding protein | HC | c... 47 5e-06
Medtr4g063557.2 | RNA and export factor-binding protein | HC | c... 47 5e-06
Medtr4g063557.1 | RNA and export factor-binding protein | HC | c... 47 5e-06
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 47 5e-06
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 47 6e-06
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 47 6e-06
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 7e-06
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 7e-06
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 7e-06
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 7e-06
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 47 7e-06
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 46 8e-06
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 46 8e-06
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 46 8e-06
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 46 8e-06
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/100 (84%), Positives = 94/100 (94%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
NKLFVGGLSWSVDEKSL+DAFSSFG VTEVRIVYDKDSGR+RGFGFVIFS ED AKSAKD
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVVPRFSNIGNLNKH 136
+M+GKALLGRPLRI+FALEK RG+P+VVPRF++ G+ NKH
Sbjct: 96 AMDGKALLGRPLRINFALEKPRGIPVVVPRFTDNGHFNKH 135
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 62/81 (76%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLF+GG+S+S DE L++AFS +G V + +I+ D+D+GRSRGFGF+ F+ ++A SA +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 98 MNGKALLGRPLRISFALEKAR 118
M+ K L GR +R+++A E+AR
Sbjct: 101 MDNKELDGRTVRVNYATERAR 121
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 62/81 (76%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLF+GG+S+S DE L++AFS +G V + +I+ D+D+GRSRGFGF+ F+ ++A SA +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 98 MNGKALLGRPLRISFALEKAR 118
M+ K L GR +R+++A E+AR
Sbjct: 101 MDNKELDGRTVRVNYATERAR 121
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 66/79 (83%), Gaps = 1/79 (1%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLF+GGLS++VD++SL+DAF+++G V E R++ D+++GRSRGFGFV F++E+ A SA S
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
Query: 98 MNGKALLGRPLRISFALEK 116
M+G+ L GR +R+S+A ++
Sbjct: 96 MDGQDLNGRNIRVSYANDR 114
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 63/81 (77%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVGG+S++ DE+SL DAFS +GQV + RI+ D++SGRS+GFGFV ++ ++A SA +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 98 MNGKALLGRPLRISFALEKAR 118
++G+ L GR + ++FA E+ R
Sbjct: 105 LDGQDLYGRRVGVNFANERPR 125
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 63/81 (77%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVGG+S++ DE+SL DAFS +GQV + RI+ D++SGRS+GFGFV ++ ++A SA +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 98 MNGKALLGRPLRISFALEKAR 118
++G+ L GR + ++FA E+ R
Sbjct: 105 LDGQDLYGRRVGVNFANERPR 125
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 65/81 (80%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLF+GG+S+S DE SL++AFS +G+V + RI+ D+++GRSRGFGF+ F++ ++A SA +
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 98 MNGKALLGRPLRISFALEKAR 118
++G+ L GR +R+++A E+ R
Sbjct: 103 LDGQDLHGRRVRVNYANERPR 123
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 64/88 (72%), Gaps = 3/88 (3%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVGGLS+ EK+L DAFS++GQV E +++ D+ S +S+G+GFV F+++D+A+ A
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 98 MNGKALLGRPLRISFA---LEKARGVPI 122
MN KAL GR + + +A +++ G+PI
Sbjct: 93 MNEKALNGRVVFVDYAKPDTKRSMGMPI 120
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 62/81 (76%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
L V G+S+S DE SL++AFS +G+V + RI+ D+++GRSRGFGF+ F++ ++A SA +
Sbjct: 51 HLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 110
Query: 98 MNGKALLGRPLRISFALEKAR 118
++G+ L GR +R+++A E+ R
Sbjct: 111 LDGQDLHGRRVRVNYANERPR 131
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 60/81 (74%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL+VGG+S+S D+ L+++F+ +G V + R++ D++ GRS+GFGFV F+ ++A +A +
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 98 MNGKALLGRPLRISFALEKAR 118
M+ + L GR +R+++A E+ R
Sbjct: 101 MDNQELHGRTVRVNYAQERPR 121
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+KLF+GGLS++VD++SL+DAF+++G V E R++ D+++GRSRGFGFV F++E+ A SA
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL- 94
Query: 97 SMNGKALL 104
SM+G+ ++
Sbjct: 95 SMDGQVVI 102
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 56/76 (73%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ FVGGL+W+ D ++L+ AFS FG++T+ +++ D+++GRSRGFGFV F+ E + A +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 98 MNGKALLGRPLRISFA 113
MNG+ + GR + ++ A
Sbjct: 69 MNGQDIDGRNITVNEA 84
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N++ VG L+W VD +L+ F GQV E +++YD++SGRSRGFGFV FS+ D+ SA
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 97 SMNGKALLGRPLRISFA 113
+++G L GR +R+S A
Sbjct: 256 TLDGADLNGRAIRVSPA 272
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFVG L +SVD L + F + G V V ++YDK +GRSRGFGFV S+ + ++A
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 98 MNGKALLGRPLRIS 111
+NG + GR LR++
Sbjct: 145 LNGYVVDGRELRVN 158
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N++ VG L+W VD +L+ F GQV E +++YD++SGRSRGFGFV FS+ D+ SA
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 97 SMNGKALLGRPLRISFA 113
+++G L GR +R+S A
Sbjct: 256 TLDGADLNGRAIRVSPA 272
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFVG L +SVD L + F + G V V ++YDK +GRSRGFGFV S+ + ++A
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 98 MNGKALLGRPLRIS 111
+NG + GR LR++
Sbjct: 145 LNGYVVDGRELRVN 158
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+++V L+W VD L+ FS G++ R+VYD+++GRSRGFGFV S E + A +
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 98 MNGKALLGRPLRISFALEKAR 118
++G++L GR +R+S A ++ R
Sbjct: 267 LDGQSLEGRTIRVSVAEDRPR 287
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG + VD + L F G V ++Y++ + SRGFGFV S ++A+SA +
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 98 MNGKALLGRPLRISFALEK 116
NG GR L ++ A K
Sbjct: 170 FNGYDYNGRSLVVNKASPK 188
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 55/76 (72%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ FVGGL+W+ D ++L+ AFS +G++ + +I+ D+++GRSRGFGFV F+ E A ++
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 98 MNGKALLGRPLRISFA 113
MNG+ L GR + ++ A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 55/76 (72%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ FVGGL+W+ D ++L+ AFS +G++ + +I+ D+++GRSRGFGFV F+ E A ++
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 98 MNGKALLGRPLRISFA 113
MNG+ L GR + ++ A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 55/76 (72%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ FVGGL+W+ D ++L+ AFS +G++ + +I+ D+++GRSRGFGFV F+ E + A +
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 98 MNGKALLGRPLRISFA 113
MNG+ + GR + ++ A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K++ G L W ++ + L+DAF + +I+Y++D+GRSRGFGFV F + ++A +
Sbjct: 212 HKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALN 271
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVV 124
+MNG + GRPLR++ A + P V+
Sbjct: 272 AMNGVEVQGRPLRLNLAAARTSPSPPVI 299
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+L+VG L +S+ L D F+ G V V IVYD+ + RSRGF FV + ++AK A
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRM 169
Query: 98 MNGKALLGRPLRISF 112
+G + GR +++F
Sbjct: 170 FDGSQVGGRSAKVNF 184
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ +VG L W VD SL+ FS G+V ++VYD+++GRSRGFGFV S E + A +
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 276
Query: 98 MNGKALLGRPLRISFALEKAR 118
++G++ GR +R++ A E+ R
Sbjct: 277 LDGQSFNGRAIRVNVAEERPR 297
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K+FVG L + VD + L F G V ++Y++D+ RSRGFGFV S ++ + A +
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 98 MNGKALLGRPLRISFALEKARGVP-IVVPRFSNIG 131
+G L GR L ++ A RG P + PR N G
Sbjct: 183 FSGFELDGRLLTVNKA--APRGTPRLRQPRTFNSG 215
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 9 LATTISAKFNVPPRFYCXXXXXXXXXXXNKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRI 68
L TI+ +P C KLF+ GLS++ +E L+D F GQ+ EV++
Sbjct: 10 LIATIANTRTLPQLLLCVRHHSS-----TKLFIAGLSYNTNETVLRDTFEQHGQIIEVKV 64
Query: 69 VYDKDSGRSRGFGFVIFSAEDDAKSAKDSMNGKALLGRPLRISFA 113
+ + +G S+G+GFV F++E A +A+ ++G+ + GR +R+ +A
Sbjct: 65 ICNHRTGESKGYGFVRFNSETAAATARKELHGQIVDGRRIRVGYA 109
>Medtr3g080160.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:36261249-36261602 | 20130731
Length = 72
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 45/57 (78%)
Query: 59 SFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMNGKALLGRPLRISFALE 115
SF V VRIV+ KDSGR GFGFVIFS EDDAKSAKD+M+ KALL RPLRI+ L+
Sbjct: 3 SFFLVAAVRIVHVKDSGRVGGFGFVIFSNEDDAKSAKDAMDRKALLDRPLRINVELK 59
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
K+F+ GL S E L FS FG+VT+V+++ DK +G+S GF ++ F ED A+SA
Sbjct: 71 TKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAAK 130
Query: 97 SMNGKALLGRPLRISFA 113
MNGK GR + ++ A
Sbjct: 131 EMNGKLFYGRFIYVTIA 147
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K+FV GL++S E+ L +AFS +G V + IV +K R +GFG+V F+ E++A+ A+
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQI 91
Query: 97 SMNGKALLGRPLRISF 112
MNGK L GR L +
Sbjct: 92 GMNGKILHGRVLYVDM 107
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+L+V GLS+ E+SL++AF +FGQ+ +V +V DK + R RGF F+ ++ E+++K A +
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 98 MNGKALLGRPLRISFA 113
M+GK L GR + + A
Sbjct: 156 MHGKFLDGRVIFVEVA 171
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQ-VTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
LF+G L VDEK L D FS+FG VT +I+ D D+G SRGFGF+ + + + + SA ++
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 173
Query: 98 MNGKALLGRPLRISFALEK 116
MNG+ L R + +S+A +K
Sbjct: 174 MNGQYLCNRQITVSYAYKK 192
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 40 FVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMN 99
+VG L + E+ L + F G V V + D+ + + +G+GFV F +E+DA A +N
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 100 GKALLGRPLRISFALEKARGVPIVVPRFSNIGNLN 134
L G+P+R++ A + + + + F IGNL+
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGANLF--IGNLD 120
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG L+W+V +SL AF G V R+++D ++G+SRG+GFV ++ + + +A
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 98 MNGKALLGRPLRISFA 113
M+ L GR LR+S A
Sbjct: 265 MDNVELEGRTLRVSLA 280
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
KL+ G L +SVD L +G + ++YD+D+G+SRGF FV S +D +
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ 172
Query: 97 SMNGKALLGRPLRISFA 113
+++GK +GR LR++F+
Sbjct: 173 NLDGKEFMGRTLRVNFS 189
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N L+VGGL+ V+E L AF FG + +V+ D+ + + R FGFV F +DA +A D
Sbjct: 10 NTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMD 69
Query: 97 SMNGKALLGRPLRISFAL-EKARG 119
+M+G L GR L +++AL EK +G
Sbjct: 70 NMDGAELYGRVLTVNYALPEKIKG 93
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 69.3 bits (168), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVG LS V + +L FS + ++ R+++D+ +GRSRGFGFV F ++ DA+SA + +
Sbjct: 149 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 208
Query: 99 NGKALLGRPLRISFALEKARGV 120
GK L R +R ++A + A G+
Sbjct: 209 TGKWLGSRQIRCNWATKGAGGI 230
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFV GLS+ EK+L+ AF FG++ EV+++ DK S RS+G+ F+ ++ E+ A +A
Sbjct: 193 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKE 252
Query: 98 MNGKALLGRPLRISFA 113
MNGK + G + + A
Sbjct: 253 MNGKIINGWMIVVDVA 268
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K++ G L W + + L+ AF+ + ++VY++++G+SRG+GFV F +D + A
Sbjct: 207 HKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALS 266
Query: 97 SMNGKALLGRPLRISFALEKAR 118
+MNG + GRPLR+ A++ +
Sbjct: 267 AMNGVEVQGRPLRLKLAVDNRK 288
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFVG L +S+ L F G V V I+YD + RSRGF FV +DA+ A
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 98 MNGKALLGRPLRISFALEKARGVPIVVPR 126
+G + GR ++++F VPIV R
Sbjct: 169 FDGTTVGGRAIKVNFP-----EVPIVGKR 192
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K++ G L W + + L+ AF+ + ++VY++++G+SRG+GFV F +D + A
Sbjct: 207 HKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALS 266
Query: 97 SMNGKALLGRPLRISFALEKAR 118
+MNG + GRPLR+ A++ +
Sbjct: 267 AMNGVEVQGRPLRLKLAVDNRK 288
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFVG L +S+ L F G V V I+YD + RSRGF FV +DA+ A
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 98 MNGKALLGRPLRISFALEKARGVPIVVPR 126
+G + GR ++++F VPIV R
Sbjct: 169 FDGTTVGGRAIKVNFP-----EVPIVGKR 192
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 47/64 (73%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+L+V GLS+ E+SL++AF +FGQ+ +V +V DK + R RGF F+ ++ E+++K A +
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 98 MNGK 101
M+GK
Sbjct: 156 MHGK 159
>Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661573 | 20130731
Length = 139
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
K+F+ GL S E L FS FG+VT+V+++ DK +G+S GF ++ F ED A+SA
Sbjct: 71 TKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAAK 130
Query: 97 SMNGKALL 104
MNGK +
Sbjct: 131 EMNGKVCM 138
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K+FV GL++S E+ L +AFS +G V + IV +K R +GFG+V F+ E++A+ A+
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQI 91
Query: 97 SMNGKALLGRP 107
MNGK +P
Sbjct: 92 GMNGKVRTYKP 102
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG LS V + +L FS++ ++ R+++D+ +GRSRGFGFV F + +A+SA +
Sbjct: 132 HIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAIND 191
Query: 98 MNGKALLGRPLRISFALEKA 117
+ GK L R +R ++A + A
Sbjct: 192 LTGKWLGSRQIRCNWATKGA 211
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLF+ GLS ++ L +AFS FGQ+ E +++ D+ SGRS+GF FV +S ++A+ A++
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 98 MNGKALLG 105
MN K L G
Sbjct: 96 MNAKFLDG 103
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+++V L+W VD L+ FS G++ R+VYD+++GRSRGFGFV S E + A +
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 98 MNGK 101
++G+
Sbjct: 267 LDGQ 270
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG + VD + L F G V ++Y++ + SRGFGFV S ++A+SA +
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 98 MNGKALLGRPLRISFALEK 116
NG GR L ++ A K
Sbjct: 170 FNGYDYNGRSLVVNKASPK 188
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L ++D K+L D FSSFGQ+ +I D SG+S+G+GFV F AED A++A D +
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 99 NG 100
NG
Sbjct: 181 NG 182
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++ L S+ ++ L++ FS FG +T +I+ D + G SRG GFV FS ++A A M
Sbjct: 317 LYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPN-GVSRGSGFVAFSTPEEASRALGEM 375
Query: 99 NGKALLGRPLRISFALEK 116
NGK ++ +PL ++ A K
Sbjct: 376 NGKMIVSKPLYVAVAQRK 393
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L +V++ L D F+ GQV VR+ D + RS G+G+V F+ DA A D +
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 99 NGKALLGRPLRISFA 113
N + + +R+ ++
Sbjct: 94 NFTPMNNKSIRVMYS 108
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N ++V LS S E L++ F ++G +T ++ D D GRS+ FGFV F +DA A +
Sbjct: 211 NNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVE 269
Query: 97 SMNGK 101
++NGK
Sbjct: 270 ALNGK 274
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW DE+ L++ F+++G+V E I+ D+ +GR+RGFGFV+FS
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFS 55
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL ++ E + F FG +T+V ++YD ++ R RGFGF+ + +E+
Sbjct: 107 KIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW DE+ L++ F+++G+V E I+ D+ +GR+RGFGFV+FS
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFS 55
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL ++ E + F FG +T+V ++YD ++ R RGFGF+ + +E+
Sbjct: 107 KIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 56/86 (65%), Gaps = 11/86 (12%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD-- 96
LF+GG+S++ +L+ FS +G+V + +I+ D+++GR RGFGFV F+ ++A +A
Sbjct: 36 LFLGGISYN----TLRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTM 91
Query: 97 -----SMNGKALLGRPLRISFALEKA 117
SM + L GR +R+++A EK+
Sbjct: 92 SLAIKSMKNQDLYGRKVRVNYATEKS 117
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 63.5 bits (153), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVG LS V + +L FS + ++ R+++D +GRS+G+GFV F DA+SA + M
Sbjct: 131 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 190
Query: 99 NGKALLGRPLRISFALEKARG 119
GK L R +R ++A + A G
Sbjct: 191 TGKWLGNRQIRCNWATKGAGG 211
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 63.5 bits (153), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVG LS V + +L FS + ++ R+++D +GRS+G+GFV F DA+SA + M
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 99 NGKALLGRPLRISFALEKARG 119
GK L R +R ++A + A G
Sbjct: 207 TGKWLGNRQIRCNWATKGAGG 227
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 63.5 bits (153), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVG LS V + +L FS + ++ R+++D +GRS+G+GFV F DA+SA + M
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 99 NGKALLGRPLRISFALEKARG 119
GK L R +R ++A + A G
Sbjct: 207 TGKWLGNRQIRCNWATKGAGG 227
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 39/48 (81%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIF 85
KLF+GG+SW +E+ L++ FS++G+V E I+ D+ +GR+RGFGFV+F
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF 54
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL+ +V E + F FG +T+V ++YD ++ R RGFGF+ + +E+
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 39/48 (81%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIF 85
KLF+GG+SW +E+ L++ FS++G+V E I+ D+ +GR+RGFGFV+F
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF 54
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL+ +V E + F FG +T+V ++YD ++ R RGFGF+ + +E+
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 62.4 bits (150), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAK 95
+ +FVG L+ V + LQ+ F + +G V ++V D ++GRS+G+GFV FS E + A
Sbjct: 108 HSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAM 167
Query: 96 DSMNGKALLGRPLRISFALEK 116
MNG RP+RIS A K
Sbjct: 168 SEMNGVYCSTRPMRISAATPK 188
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L + VDE L FS G+V ++I+ +K +G+ G+GF+ F + A+ +
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 99 NGKALLG--RPLRISFA 113
NG + G + R+++A
Sbjct: 77 NGTQMPGTEQTFRLNWA 93
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
K+FVGGL+W + +L++ F +G + E I+ DK +GRS+G+GFV F D AK A +
Sbjct: 18 TKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACE 77
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
K+FVGGL+W + +L++ F +G + E I+ DK +GRS+G+GFV F D AK A +
Sbjct: 18 TKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACE 77
Query: 97 S----MNGK 101
+NG+
Sbjct: 78 EPTVIINGR 86
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFV GLS ++L++AF FG+V R+V D+ SG S+GFGFV ++ +DA + M
Sbjct: 53 LFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGM 112
Query: 99 NGKALLG 105
+GK L G
Sbjct: 113 DGKFLEG 119
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++ + S++E+ L++ FS FG +T +++ D GRS+G GFV F+ ++A A D M
Sbjct: 306 LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDA-RGRSKGVGFVAFTTPEEASKAIDEM 364
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNI----GNLNKH 136
NGK + +P+ +S A K + FS I GN H
Sbjct: 365 NGKIIGQKPVYVSVAQRKEERKAQLQAHFSAIQVSGGNAGYH 406
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L +V++ L D FS V VR+ D+ + S G+G+V +S DA +A +++
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 99 NGKALLGRPLRISFA 113
N L G+P+RI F+
Sbjct: 87 NYVPLNGKPIRIMFS 101
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LF+ L S+D K+L + FS FG V ++ D + G S+G GFV F + AK+A + +
Sbjct: 115 LFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSN-GHSKGHGFVQFDNDQSAKNAIEKL 173
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNI 130
+G + + + + + + R P+F+N+
Sbjct: 174 DGMLMNDKKVYVGYFV---RCQERSSPKFTNV 202
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
KLFV LS+ ++ L+ FS FG +TE ++ D+++ R +GFGFV + +E +A+ A+
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 97 SMNGKALLGRPLRISFA 113
++NG+ + GR + + A
Sbjct: 67 ALNGRIVDGRLIFVEHA 83
>Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:30368066-30365046 | 20130731
Length = 149
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K+ V L + E +LQ FS+FG++ EV++V D + RS+G F+ ++ +DDA A +
Sbjct: 39 SKILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAMLALE 98
Query: 97 SMNGKALLGRPLRISFALEK 116
+M+ ++ GR IS LEK
Sbjct: 99 TMDQQSFYGR--TISVELEK 116
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++ L S++++ L++ FS FG +T ++++D G S+GFGFV FS ++A A + M
Sbjct: 211 LYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAINGM 269
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNI 130
+GK + +PL + A K + +FS I
Sbjct: 270 SGKIIGQKPLYVVVAQRKEDRKTRLQAQFSQI 301
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FV L S+D K L D F++FG V ++ D + G+S G+GFV + + AK A + +
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSN-GKSLGYGFVQYDNHESAKCAIEKL 75
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNI 130
+G + + + + + + P+F+N+
Sbjct: 76 DGMLIKDKKAFVGYFIRRQERSENGSPKFTNV 107
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + L + FSS + V ++VYD ++GRS+G+GFV F E + A
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 98 MNGKALLGRPLRISFALEK 116
MNG RP+RI A +
Sbjct: 252 MNGVYCSSRPMRIGAATPR 270
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 60.5 bits (145), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L ++D K+L D FS FG + +I D SG S+G+GFV F E+ A+SA D +
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKL 172
Query: 99 NGKALLGRPLRIS-FALEKARGVPIVVPRFSNI 130
NG L +P+ + F ++ R + +F+N+
Sbjct: 173 NGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNV 205
Score = 58.9 bits (141), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++ L SV ++ L + FS FG VT +I+ D G SRG GFV FS ++A A M
Sbjct: 308 LYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDP-QGISRGSGFVAFSTPEEATRALAEM 366
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNI 130
NGK + G+PL ++ A +K + +FS +
Sbjct: 367 NGKMVAGKPLYVAPAQKKEERKARLQAQFSQV 398
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L V + L D F+ GQV VRI D S +S G+G+V FS DA A D +
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 99 NGKALLGRPLRISFA 113
N L +P+RI ++
Sbjct: 86 NFTPLNNKPIRIMYS 100
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW +E L+ F +FG V E I+ D+ +GR+RGFGFV+F+
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA 53
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL+ +V E ++ F FG +T+V ++YD ++ R RGFGF+ + +E+
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW +E L+ F +FG V E I+ D+ +GR+RGFGFV+F+
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA 53
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL+ +V E ++ F FG +T+V ++YD ++ R RGFGF+ + +E+
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW +E L+ F +FG V E I+ D+ +GR+RGFGFV+F+
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA 53
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL+ +V E ++ F FG +T+V ++YD ++ R RGFGF+ + +E+
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W +++++ F FG++ E ++ DK +GRS+G+GFV F D A A
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRA 73
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W +++++ F FG++ E ++ DK +GRS+G+GFV F D A A
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRA 73
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 60.1 bits (144), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + L + FSS + V ++VYD ++GRS+G+GFV F E + A
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 98 MNGKALLGRPLRISFA 113
MNG RP+RI A
Sbjct: 252 MNGVYCSSRPMRIGAA 267
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 38/49 (77%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW +E+ L++ FS++G V ++ +K++G+ RGFGFV+FS
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFS 55
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL ++ E+ + F ++G VT+V ++YD+++GR RGFGF+ F E+
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEE 164
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 38/49 (77%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW +E+ L++ FS++G V ++ +K++G+ RGFGFV+FS
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFS 55
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL ++ E+ + F ++G VT+V ++YD+++GR RGFGF+ F E+
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEE 164
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FV GL+ ++L++AF FG+V +VR+V D+ SG S+GFG+V ++ +DA M
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGM 105
Query: 99 NGKALLG 105
+GK L G
Sbjct: 106 DGKFLEG 112
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL V G+ W VD + L++ S +G++ + ++ ++ +GRSRGFG+V F++ DDAK
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 98 MNGKALLG-RPLRISFALEK 116
++G+ +LG R L + A K
Sbjct: 62 LSGEHVLGDRMLEVKVATPK 81
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL V G+ W VD + L++ S +G++ + ++ ++ +GRSRGFG+V F++ DDAK
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 98 MNGKALLG-RPLRISFALEK 116
++G+ +LG R L + A K
Sbjct: 62 LSGEHVLGDRMLEVKVATPK 81
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL V G+ W VD + L++ S +G++ + ++ ++ +GRSRGFG+V F++ DDAK
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 98 MNGKALLG-RPLRISFALEK 116
++G+ +LG R L + A K
Sbjct: 62 LSGEHVLGDRMLEVKVATPK 81
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL V G+ W VD + L++ S +G++ + ++ ++ +GRSRGFG+V F++ DDAK
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 98 MNGKALLG-RPLRISFALEK 116
++G+ +LG R L + A K
Sbjct: 62 LSGEHVLGDRMLEVKVATPK 81
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 58.9 bits (141), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + LQ+ F+S F + ++V D ++GRS+G+GFV F E + A
Sbjct: 216 VFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTE 275
Query: 98 MNGKALLGRPLRISFALEK 116
MNG RP+R+ A K
Sbjct: 276 MNGVYCSSRPMRVGVATPK 294
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W ++++ F FG + E ++ DK++GRS+G+GFV F + A+ A
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 86
>Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:23814162-23811233 | 20130731
Length = 220
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V L+ + L D F FG V +V + D +G RGFGFV F DA AK M
Sbjct: 45 LLVRNLAKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADAKYHM 104
Query: 99 NGKALLGRPLRISFALE 115
+G+ LLGR L + FA E
Sbjct: 105 DGQVLLGRELTVVFAEE 121
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 58.5 bits (140), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFV LS+ E ++ F S+G + VR+V D +S + RG+ F+ + D K+A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPR 126
+G+ + GR R+ +E+ R VP PR
Sbjct: 197 DGRKIEGR--RVLVDVERGRTVPNWRPR 222
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 58.5 bits (140), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFV LS+ E ++ F S+G + VR+V D +S + RG+ F+ + D K+A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPR 126
+G+ + GR R+ +E+ R VP PR
Sbjct: 197 DGRKIEGR--RVLVDVERGRTVPNWRPR 222
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 58.5 bits (140), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFV LS+ E ++ F S+G + VR+V D +S + RG+ F+ + D K+A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPR 126
+G+ + GR R+ +E+ R VP PR
Sbjct: 197 DGRKIEGR--RVLVDVERGRTVPNWRPR 222
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 58.5 bits (140), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFV LS+ E ++ F S+G + VR+V D +S + RG+ F+ + D K+A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPR 126
+G+ + GR R+ +E+ R VP PR
Sbjct: 197 DGRKIEGR--RVLVDVERGRTVPNWRPR 222
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W ++++ F FG + E ++ DK++GRS+G+GFV F + A+ A
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 86
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL+VG L +++ E +L++ F FGQ+ V++ D ++G +GFGFV F+ + AK+A+ S
Sbjct: 304 KLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQ-S 362
Query: 98 MNGK-ALLGRPLRIS 111
+NGK + GR +++S
Sbjct: 363 LNGKLEIAGRTIKVS 377
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 58.2 bits (139), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L +V + L D F+ GQV VR+ D + RS G+G+V +S DA A D +
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 99 NGKALLGRPLRISFA 113
N L RP+RI ++
Sbjct: 96 NFTPLNNRPIRIMYS 110
Score = 57.0 bits (136), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+V L S+ ++ L++ FSS+G +T +++ D + G SRG GFV FS ++A A M
Sbjct: 318 LYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPN-GVSRGSGFVAFSTPEEASRALLEM 376
Query: 99 NGKALLGRPLRISFALEK 116
NGK + +PL ++ A K
Sbjct: 377 NGKMVASKPLYVTLAQRK 394
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L ++D K+L D FSSFG + ++ D SG+S+G+GFV F E+ A+ A + +
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 99 NGKAL 103
NG L
Sbjct: 183 NGMLL 187
Score = 53.1 bits (126), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N +FV LS S + L+ F FG +T ++ D D G+S+ FGFV F + DDA A +
Sbjct: 213 NNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVE 271
Query: 97 SMNGKALLGRPLRISFALEKA 117
++NGK + + + A +K+
Sbjct: 272 ALNGKKIDDKEWYVGKAQKKS 292
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFV L +S E+ L++ FS FG V++ +V DKD+ RS+G ++ FSA + A A +
Sbjct: 330 RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEE 389
Query: 98 MNGKALLGRPLRISFALEKARGVPIVVPRFSN 129
+ GR L + A +PR SN
Sbjct: 390 SDNSIFQGRLLHVMPA----------IPRHSN 411
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++ L +E+ L+D FS FG VT R++ D G S+G GFV FS ++A A + M
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDS-HGHSKGSGFVAFSTPEEANKALNEM 373
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNI 130
NGK + +PL ++ A K + F+ I
Sbjct: 374 NGKLVGRKPLFVAVAQRKEERKAQLQAHFAQI 405
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L S+D K+L D F++FG V ++ D + G+S+G+GFV F E+ AKSA +
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGN-GQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 99 NGKALLGRPLRISFAL-EKARGVPIVVPRFSNI 130
+G + + + + F + + R P+F+N+
Sbjct: 179 DGMLINDKQVYVGFFVRHQERARTNGSPKFTNV 211
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L SV+E L D FS QV +R+ D+ S G+ +V F+ DA +AK+ +
Sbjct: 32 LYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELL 91
Query: 99 NGKALLGRPLRISFA 113
N L +P+RI F+
Sbjct: 92 NFTPLNEKPIRIMFS 106
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++ L +E+ L+D FS FG VT R++ D G S+G GFV FS ++A A + M
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDS-HGHSKGSGFVAFSTPEEANKALNEM 373
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNI 130
NGK + +PL ++ A K + F+ I
Sbjct: 374 NGKLVGRKPLFVAVAQRKEERKAQLQAHFAQI 405
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L S+D K+L D F++FG V ++ D + G+S+G+GFV F E+ AKSA +
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGN-GQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 99 NGKALLGRPLRISFAL-EKARGVPIVVPRFSNI 130
+G + + + + F + + R P+F+N+
Sbjct: 179 DGMLINDKQVYVGFFVRHQERARTNGSPKFTNV 211
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L SV+E L D FS QV +R+ D+ S G+ +V F+ DA +AK+ +
Sbjct: 32 LYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELL 91
Query: 99 NGKALLGRPLRISFA 113
N L +P+RI F+
Sbjct: 92 NFTPLNEKPIRIMFS 106
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG LS+SV ++ F G+V +VR D++ GR +GFG V F++ + A+SA + M
Sbjct: 331 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFASAEAAQSALE-M 388
Query: 99 NGKALLGRPLRISFALEK 116
NG+ LL R +R+ A E+
Sbjct: 389 NGQELLQRAVRLDLARER 406
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG LS+SV ++ F G+V +VR D++ GR +GFG V F++ + A+SA + M
Sbjct: 343 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFASAEAAQSALE-M 400
Query: 99 NGKALLGRPLRISFALEK 116
NG+ LL R +R+ A E+
Sbjct: 401 NGQELLQRAVRLDLARER 418
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG LS+SV ++ F G+V +VR D++ GR +GFG V F++ + A+SA + M
Sbjct: 366 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFASAEAAQSALE-M 423
Query: 99 NGKALLGRPLRISFALEK 116
NG+ LL R +R+ A E+
Sbjct: 424 NGQELLQRAVRLDLARER 441
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
KLFVGGL+W ++++ F FG++ E ++ DK +GRS+G+GFV F + A A
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRA 82
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
KLFVGGL+W ++++ F FG++ E ++ DK +GRS+G+GFV F + A A
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRA 82
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W ++ F FG + E I+ DK++G+S+G+GFV F + A+ A
Sbjct: 16 TKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRA 73
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG LS+SV ++ F G+V +VR D++ GR +GFG V F++ + A+SA + M
Sbjct: 378 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFASAEAAQSALE-M 435
Query: 99 NGKALLGRPLRISFALEK 116
NG+ LL R +R+ A E+
Sbjct: 436 NGQELLQRAVRLDLARER 453
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFV L +S E+ L++ FS FG V++V +V DKD+ RS+G F+ FS + A A +
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEE 959
Query: 98 MNGKALLGRPLRISFAL 114
+ GR L + A+
Sbjct: 960 SDNSIFQGRLLHVIAAI 976
>Medtr3g059000.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:23590838-23586291 | 20130731
Length = 708
Score = 57.4 bits (137), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG L W + L+ +GQV EVR +K SG+S+G+ V F A + K+ M
Sbjct: 229 LFVGDLHWWTTDAELEAELCKYGQVKEVRFYDEKASGKSKGYCQVEFYEAYAATACKEGM 288
Query: 99 NGKALLGRPLRISFA 113
NG GRP ++FA
Sbjct: 289 NGHPFNGRPCVVAFA 303
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 57.0 bits (136), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVG + + E+ L++ G V R+V D+++G+ +G+GF ++ E+ A SA+ ++
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 99 NGKALLGRPLRISFA 113
G + GR LR+ FA
Sbjct: 91 QGYEINGRQLRVDFA 105
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++ L + E L++ FSSFG++ + + D + G S+GFGFV F +DAK A ++M
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDSN-GMSKGFGFVNFDNPEDAKRAMETM 249
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRF 127
NG L + L ++ A +KA I+ +F
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQF 278
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
++V + +V ++ L+D FS G +T +I+ D D G S+GFGFV FS ++A A +S
Sbjct: 294 IYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSF 352
Query: 99 NGKALLGRPLRISFALEK 116
+G G+PL +S A K
Sbjct: 353 HGFMFHGKPLYVSLAQRK 370
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FV L+ S+D L+D F FG + ++V +D G+S+G+GFV F E+ A +A + +
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSED-GKSKGYGFVQFETEESANAAIERL 158
Query: 99 NG 100
NG
Sbjct: 159 NG 160
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L + + L DAFS F + VRI D SG+S +G+V F + DA A +
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVK 71
Query: 99 NGKALLGRPLRISFA 113
N L G+ +R+ ++
Sbjct: 72 NHSTLNGKAIRVMWS 86
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 56.6 bits (135), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W +L +AFS +G++ + + V DK SG+S+G+GF++F A++A
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 56.6 bits (135), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W +L +AFS +G++ + + V DK SG+S+G+GF++F A++A
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 56.6 bits (135), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W +L +AFS +G++ + + V DK SG+S+G+GF++F A++A
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 56.6 bits (135), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W +L +AFS +G++ + + V DK SG+S+G+GF++F A++A
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W +L +AFS +G++ + + V DK SG+S+G+GF++F A++A
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 56.2 bits (134), Expect = 8e-09, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 41 VGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMNG 100
V LS+SV+ ++D F G+V +VR D++ GR RGFG+V F + AK A ++
Sbjct: 166 VRNLSYSVERTDMEDIFKDCGEVVDVRFNTDRE-GRFRGFGYVEFGTAEAAKKAL-KLDS 223
Query: 101 KALLGRPLRISFALEKARGVPIVVPRFSNI-------GNLNKH 136
LL R +R+ A+EK+ G P P SN+ GNL H
Sbjct: 224 TELLNRRMRVDIAIEKS-GYP---PCRSNLSSSVHTGGNLQSH 262
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL+VG + +V L+ G V + ++YDK S RSR F FV +DA +A +
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 98 MNGKALLGRPLRISFALE--KARGVPI 122
+NG + GR ++++ + G+P+
Sbjct: 121 LNGTEIGGREIKVNITEKPLTTEGLPV 147
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K++VG L+ +V SL+ FS G ++ + +S GFGFV FS+++D ++A S
Sbjct: 160 KVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISS 219
Query: 98 MNGKALLGRPLRISFA 113
N L G+ +R++ A
Sbjct: 220 FNNALLEGQKIRVNKA 235
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K+FVGGL+W +L+ F FG + E ++ D+ +G+S+G+GFV F + A A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 98 MNGKALLGRPLRISFALEK 116
N + GR + A +K
Sbjct: 87 PN-PMIDGRRANCNLAYQK 104
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K+FVGGL+W +L+ F FG + E ++ D+ +G+S+G+GFV F + A A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 98 MNGKALLGRPLRISFALEK 116
N + GR + A +K
Sbjct: 87 PN-PMIDGRRANCNLAYQK 104
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K+FVGGL+W +L+ F FG + E ++ D+ +G+S+G+GFV F + A A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 98 MNGKALLGRPLRISFALEK 116
N + GR + A +K
Sbjct: 87 PN-PMIDGRRANCNLAYQK 104
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 55.8 bits (133), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL+VG L +++ E L++ F FG V V++ D ++G +GFGF+ F+ + AK+A+ S
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQ-S 376
Query: 98 MNGK-ALLGRPLRIS 111
+NGK + GR +++S
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 55.8 bits (133), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL+VG L +++ E L++ F FG V V++ D ++G +GFGF+ F+ + AK+A+ S
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQ-S 376
Query: 98 MNGK-ALLGRPLRIS 111
+NGK + GR +++S
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 55.8 bits (133), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL+VG L +++ E L++ F FG V V++ D ++G +GFGF+ F+ + AK+A+ S
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQ-S 376
Query: 98 MNGK-ALLGRPLRIS 111
+NGK + GR +++S
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K+FVGGL+W +L+ F FG + E ++ D+ +G+S+G+GFV F + A A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 98 MNGKALLGRPLRISFALEK 116
N + GR + A +K
Sbjct: 87 PN-PMIDGRRANCNLAYQK 104
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL+ +V E ++ F FG +T+V ++YD ++ R RGFGF+ + +E+
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 88
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAK-SAKD 96
K+FVG + + V +SL FS +G++ E + +DK SG++RGF F ++ E+ AK S +
Sbjct: 164 KVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAE 223
Query: 97 SMNGKALLGRPLRISFALEKARGVPI 122
SM K + G + FA++ + P+
Sbjct: 224 SM--KTVDGHQVICKFAVDNKKPKPV 247
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDA 91
KLFV GLS ++L+ FSS+G + E +++DK +GRS+G+GFV++ D A
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGA 130
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LF G L V++ L AF+ F R+V DK +G+++G+GF+ F+ D +A
Sbjct: 133 RLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKE 192
Query: 98 MNGKALLGRPLRI 110
MNGK + RP+++
Sbjct: 193 MNGKYVGNRPIKL 205
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N + V LS E L + F +FG V+ V + DK++G SRGFGFV F +DA+ A +
Sbjct: 199 NSVRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAIN 258
Query: 97 SMNGKALLGRPLRISFALEKA 117
+NG L++ +A +
Sbjct: 259 KLNGYGYDNLILKVEWATPRT 279
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
++V + SV ++ L+D FS+ G+V +++ D D G S+GFGFV FS +A +
Sbjct: 295 IYVKNIDTSVGDEELRDHFSACGEVLSAKVMRD-DKGTSKGFGFVCFSTVVEAFKSMSCF 353
Query: 99 NGKALLGRPLRISFALEK 116
NG G+PL + FA +K
Sbjct: 354 NGCMFHGKPLYVDFAQKK 371
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+V L V EK L + FSSFG++ + I D++ G+S+GFGFV + + DDA+ A ++M
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDEN-GQSKGFGFVNYDSPDDARRAMEAM 254
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNIG 131
+G + L ++ A +K I+ F G
Sbjct: 255 DGSQFGSKILYVARAQKKVEREQILHHLFVEKG 287
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FV L+ S+D L D F +G + +I +D G+S+GFG++ F +E+ A A M
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARSED-GKSKGFGYIQFDSEESANVAIQKM 163
Query: 99 NGKALLGRPLRIS-FALEKARGVPIVVPRFSNI 130
NG + + + + F + R +P + +F+N+
Sbjct: 164 NGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNL 196
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 54.3 bits (129), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N+++VG LSW + E+ L+ FS+ V +R+ DK++G RG+ V F K+A
Sbjct: 312 NRIYVGSLSWEITEEELRKFFSNC-NVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTAL- 369
Query: 97 SMNGKALLGRPLRISFAL 114
+++ L GRP+RIS A+
Sbjct: 370 ALDQSVLFGRPVRISCAV 387
>Medtr3g058990.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:23580379-23576089 | 20130731
Length = 658
Score = 53.9 bits (128), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG L W + L+ +GQV +VR +K SG+S+G+ V F + K+ M
Sbjct: 188 LFVGDLHWWTTDADLEAELCKYGQVKDVRFFDEKASGKSKGYCQVEFYDPLATTACKEGM 247
Query: 99 NGKALLGRPLRISFA 113
NG GRP +S+A
Sbjct: 248 NGHLFNGRPCVVSYA 262
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAK 95
+ +FVG L+ V + LQ+ F + + V ++V D+ +GRS+G+GFV F+ E + A
Sbjct: 155 HTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAM 214
Query: 96 DSMNGKALLGRPLRISFALEK 116
M G RP+RI A K
Sbjct: 215 TEMQGVLCSTRPMRIGPATNK 235
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L + +DE L F + G++T V+++ +K + +S G+GF+ F+ A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 99 NGKALL--GRPLRISFA 113
NG + G+ R+++A
Sbjct: 122 NGTIMPNGGQNYRLNWA 138
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVGG+S E +L+ F+ +G V I +D+ + RGFGFV FS D SA ++
Sbjct: 11 KLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFS---DISSAHNA 67
Query: 98 M-NGKALLGRPLRISFALEKAR 118
+ + A+LGR + + A+ ++
Sbjct: 68 LQDTHAILGRKVEVRKAIPRSE 89
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKS 93
K+FVGGL ++ + + F FG++T+V ++ D + R RGFGF+ F +ED +S
Sbjct: 118 KIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQS 173
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL V L + E ++DAFSS G V EV I D+G S+GF FV F+ + DA++A
Sbjct: 283 KLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRK 342
Query: 98 MNGKALLGRPLRISFALEK 116
+NG R + + +A+ K
Sbjct: 343 LNGSKFGSRLIAVDWAVPK 361
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V L WS+ + ++D F G V +V I+ KD G+ +G+ FV + + A++A D
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 99 NGKALLGRPLRISFA 113
N + GR LR+ FA
Sbjct: 157 NATEISGRILRVEFA 171
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFS-SFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
++ L+W L+D F+ +F R+V+ G+S G+GFV + E++A++A +
Sbjct: 193 IYASNLAWKARSTHLRDIFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISA 252
Query: 98 MNGKALLGRPLRISFALEKAR 118
+ GK LLGRPL + + K +
Sbjct: 253 LQGKELLGRPLLVKISERKVK 273
>Medtr0022s0360.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | scaffold0022:121507-124438 | 20130731
Length = 157
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDK---DSGRSRGFGFVIFSAEDDAKS 93
N+L VG L + E +L FS +G++ V +++ G RGF F+ +S +++A
Sbjct: 13 NRLCVGNLDLRITEAALLKMFSPYGKIVSVDLLWHTRGPKRGEPRGFAFIHYSTKEEAIL 72
Query: 94 AKDSMNGKALLGRPLRI-----SFALEKA 117
A++ M+G+ RPL + +ALEKA
Sbjct: 73 AREKMHGRLACSRPLVVRLAGERYALEKA 101
>Medtr0022s0360.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | scaffold0022:121507-124438 | 20130731
Length = 157
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDK---DSGRSRGFGFVIFSAEDDAKS 93
N+L VG L + E +L FS +G++ V +++ G RGF F+ +S +++A
Sbjct: 13 NRLCVGNLDLRITEAALLKMFSPYGKIVSVDLLWHTRGPKRGEPRGFAFIHYSTKEEAIL 72
Query: 94 AKDSMNGKALLGRPLRI-----SFALEKA 117
A++ M+G+ RPL + +ALEKA
Sbjct: 73 AREKMHGRLACSRPLVVRLAGERYALEKA 101
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAK 95
+ +FVG L+ V + LQ+ F + + V ++V D+ +GRS+G+GFV F+ E + A
Sbjct: 155 HTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAM 214
Query: 96 DSMNGKALLGRPLRISFALEK 116
M G RP+RI A K
Sbjct: 215 TEMQGVLCSTRPMRIGPATNK 235
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L + +DE L F + G++T V+++ +K + +S G+GF+ F+ A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 99 NGKALL--GRPLRISFA 113
NG + G+ R+++A
Sbjct: 122 NGTIMPNGGQNYRLNWA 138
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAK 95
+ +FVG L+ V + LQ+ F + + V ++V D+ +GRS+G+GFV F+ E + A
Sbjct: 155 HTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAM 214
Query: 96 DSMNGKALLGRPLRISFALEK 116
M G RP+RI A K
Sbjct: 215 TEMQGVLCSTRPMRIGPATNK 235
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L + +DE L F + G++T V+++ +K + +S G+GF+ F+ A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 99 NGKALL--GRPLRISFA 113
NG + G+ R+++A
Sbjct: 122 NGTIMPNGGQNYRLNWA 138
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAK 95
+ +FVG L+ V + LQ+ F + + V ++V D+ +GRS+G+GFV F+ E + A
Sbjct: 155 HTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAM 214
Query: 96 DSMNGKALLGRPLRISFALEK 116
M G RP+RI A K
Sbjct: 215 TEMQGVLCSTRPMRIGPATNK 235
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L + +DE L F + G++T V+++ +K + +S G+GF+ F+ A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 99 NGKALL--GRPLRISFA 113
NG + G+ R+++A
Sbjct: 122 NGTIMPNGGQNYRLNWA 138
>Medtr8g070990.4 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 1022
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 469 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 528
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 529 NGTALEKNGQILRVAYA 545
>Medtr8g070990.12 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 1022
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 469 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 528
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 529 NGTALEKNGQILRVAYA 545
>Medtr8g070990.10 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 1021
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 468 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 527
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 528 NGTALEKNGQILRVAYA 544
>Medtr8g070990.2 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 1062
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 468 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 527
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 528 NGTALEKNGQILRVAYA 544
>Medtr8g070990.1 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 1063
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 469 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 528
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 529 NGTALEKNGQILRVAYA 545
>Medtr8g070990.3 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 1063
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 469 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 528
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 529 NGTALEKNGQILRVAYA 545
>Medtr8g070990.9 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 948
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 468 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 527
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 528 NGTALEKNGQILRVAYA 544
>Medtr8g070990.19 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 948
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 468 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 527
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 528 NGTALEKNGQILRVAYA 544
>Medtr8g070990.13 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 949
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 469 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 528
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 529 NGTALEKNGQILRVAYA 545
>Medtr8g070990.24 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 949
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 469 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 528
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 529 NGTALEKNGQILRVAYA 545
>Medtr8g070990.6 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 949
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 469 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 528
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 529 NGTALEKNGQILRVAYA 545
>Medtr8g070990.15 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 949
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 469 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 528
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 529 NGTALEKNGQILRVAYA 545
>Medtr8g070990.20 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 914
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 361 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 420
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 421 NGTALEKNGQILRVAYA 437
>Medtr8g070990.8 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 955
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 361 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 420
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 421 NGTALEKNGQILRVAYA 437
>Medtr8g070990.22 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 915
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.21 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 915
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.30 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 915
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.18 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 841
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 361 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 420
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 421 NGTALEKNGQILRVAYA 437
>Medtr8g070990.14 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 915
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.27 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 841
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 361 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 420
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 421 NGTALEKNGQILRVAYA 437
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LF+ + ++ L +AF FG+V ++ DK +G S+ FGFV + + + A+SA M
Sbjct: 351 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 410
Query: 99 NGKALLGRPLRISFALEKARGVP 121
NG L G+ L++ + G P
Sbjct: 411 NGCQLGGKKLKVQHKRDNKPGKP 433
>Medtr8g070990.28 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 842
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.29 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 842
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.26 | RNA-binding protein, putative | HC |
chr8:30090202-30098355 | 20130731
Length = 842
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.17 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 842
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.23 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 842
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.31 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 842
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.16 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 842
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.25 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 842
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LF+ + ++ L +AF FG+V ++ DK +G S+ FGFV + + + A+SA M
Sbjct: 350 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 409
Query: 99 NGKALLGRPLRISFALEKARGVP 121
NG L G+ L++ + G P
Sbjct: 410 NGCQLGGKKLKVQHKRDNKPGKP 432
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N + V LS E L + F FG V+ V + D+ +G SRGFGFV F + +DA+ A +
Sbjct: 211 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAIN 270
Query: 97 SMNGKALLGRPLRISFA 113
+NG LR+ +A
Sbjct: 271 KLNGYGYDNLILRVEWA 287
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + L + F + + V ++V D+ +GR++G+GFV F+ E + A
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 98 MNGKALLGRPLRISFALEKARGVPIVVPRFSN 129
M G RP+RI A K G + N
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASYQN 260
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDA 91
KLF+ GL W + L+ FS++G++ E ++ DK +G+S+G+GFV F D A
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGA 127
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGG+ +V E +D F+ +G+V + +I+ D + RSRGFGFV F E+
Sbjct: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEE 185
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFV L +S E+ L++ FS FG V++V ++ + + RS+G F+ FS + A A +
Sbjct: 193 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEE 252
Query: 98 MNGKALLGRPLRI 110
N GR LR+
Sbjct: 253 SNNSIFQGRLLRV 265
>Medtr6g048060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:17334399-17331330 | 20130731
Length = 157
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDK---DSGRSRGFGFVIFSAEDDAKS 93
N+L+VG L + E +L FS +G++ ++ G RGF F+ +S +++A
Sbjct: 13 NRLYVGNLDLRITEATLLKMFSPYGKIMSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAIL 72
Query: 94 AKDSMNGKALLGRPLRI-----SFALEKA 117
AK+ M+G+ RPL + +ALEKA
Sbjct: 73 AKEKMHGRLACSRPLVVRLAGERYALEKA 101
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFV L +S E+ L++ FS FG V++V ++ + + RS+G F+ FS + A A +
Sbjct: 179 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEE 238
Query: 98 MNGKALLGRPLRI 110
N GR LR+
Sbjct: 239 SNNSIFQGRLLRV 251
>Medtr3g083550.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37716900-37714302 | 20130731
Length = 248
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V L + L+ F FG + ++ + D +G+ RGFGF+ F DA AK M
Sbjct: 43 LLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHM 102
Query: 99 NGKALLGRPLRISFALE 115
+G+ LLGR + + FA E
Sbjct: 103 DGQVLLGREITVVFAEE 119
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFS-SFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + L + FS + V ++V+D ++GRS+G+GFV F + + A +
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 98 MNGKALLGRPLRISFA 113
MNG R +RI A
Sbjct: 249 MNGVFCSSRAMRIGAA 264
>Medtr8g070990.7 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 956
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.11 | RNA-binding protein, putative | HC |
chr8:30090202-30098383 | 20130731
Length = 956
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr8g070990.5 | RNA-binding protein, putative | HC |
chr8:30090202-30098364 | 20130731
Length = 956
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL + DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A D
Sbjct: 362 LVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLT 421
Query: 99 NGKALL--GRPLRISFA 113
NG AL G+ LR+++A
Sbjct: 422 NGTALEKNGQILRVAYA 438
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 50.8 bits (120), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 47/82 (57%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++F+GGL + +++ G + E++++ D+++G S+G+ FV + ++ A+ A D
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 97 SMNGKALLGRPLRISFALEKAR 118
++ K G+ LR + K R
Sbjct: 164 DIHNKEFKGKTLRCLLSETKHR 185
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 50.8 bits (120), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 47/82 (57%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++F+GGL + +++ G + E++++ D+++G S+G+ FV + ++ A+ A D
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 97 SMNGKALLGRPLRISFALEKAR 118
++ K G+ LR + K R
Sbjct: 164 DIHNKEFKGKTLRCLLSETKHR 185
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 50.8 bits (120), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 47/82 (57%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++F+GGL + +++ G + E++++ D+++G S+G+ FV + ++ A+ A D
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 97 SMNGKALLGRPLRISFALEKAR 118
++ K G+ LR + K R
Sbjct: 164 DIHNKEFKGKTLRCLLSETKHR 185
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 50.4 bits (119), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W ++L FS +G++ + + V DK SG+S+G+ F++F + A
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRA 222
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 50.4 bits (119), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W ++L FS +G++ + + V DK SG+S+G+ F++F + A
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRA 222
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 50.4 bits (119), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W ++L FS +G++ + + V DK SG+S+G+ F++F + A
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRA 222
>Medtr1g108290.1 | MKI67 interacting nucleolar phosphoprotein | HC |
chr1:48970128-48966656 | 20130731
Length = 213
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G + EK ++ F FG + +RI +K +G+SR FGF+ F + + AK D+M
Sbjct: 55 LYIGRIPHGFYEKEMEAYFGQFGTIKRLRISRNKKTGKSRHFGFIEFESPEVAKIVADTM 114
Query: 99 NGKALLGRPLRI 110
+ L L++
Sbjct: 115 HNYLLFEHLLQV 126
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + L + FS + V ++V+D ++GRS+G+GFV F + + A +
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 98 MNGKALLGRPLRISFALEK 116
MNG R +RI A +
Sbjct: 249 MNGVFCSSRAMRIGAATPR 267
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAE 88
K+FVGG+ +V E L+ FS G V E I+ D + RSRGFGFV+F ++
Sbjct: 107 KIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSD 157
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N L+V GLS + ++ L+ FS+ G+V +V +V D + SRGFGFV ++A
Sbjct: 45 NNLYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVK 104
Query: 97 SMNGKALLGR 106
+N L GR
Sbjct: 105 YLNRSVLEGR 114
>Medtr4g127330.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:52834251-52836957 | 20130731
Length = 182
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G + E ++ F FG V +RI +K +G+SR FGF+ F + + AK D+M
Sbjct: 53 LYIGRIPHGFYETEMEAYFGQFGTVKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTM 112
Query: 99 NGKALLGRPLRI 110
+ L L++
Sbjct: 113 HNYLLFEHLLQV 124
>Medtr4g127330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:52834251-52836886 | 20130731
Length = 182
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G + E ++ F FG V +RI +K +G+SR FGF+ F + + AK D+M
Sbjct: 53 LYIGRIPHGFYETEMEAYFGQFGTVKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTM 112
Query: 99 NGKALLGRPLRI 110
+ L L++
Sbjct: 113 HNYLLFEHLLQV 124
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVGG+ + E + F+ +G+V ++ +V DK +G+S+GF F+ + + A D++
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 99 NGKALLGRPLRISF 112
NG + GR +R+
Sbjct: 98 NGAQVSGRIIRVDH 111
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++FVGGL + E +++ +FG + IV DK++G S+G+GF I+ A
Sbjct: 135 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 194
Query: 97 SMNGKALLGRPLRISFALEKARGVP 121
++NG + + L + A A P
Sbjct: 195 ALNGLKMGDKTLTVRRATVSAHSKP 219
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG L+ K +++ FS +G++ +V ++ D D +SRG GFV +S D A +A ++
Sbjct: 180 KLFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRD-DQKQSRGCGFVKYSHRDMALAAINA 238
Query: 98 MNGKALL---GRPLRISFA 113
+NG + +PL + FA
Sbjct: 239 LNGIYTMRGCEQPLIVRFA 257
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++FVGGL + E +++ +FG + IV DK++G S+G+GF I+ A
Sbjct: 178 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 237
Query: 97 SMNGKALLGRPLRISFALEKARGVP 121
++NG + + L + A A P
Sbjct: 238 ALNGLKMGDKTLTVRRATVSAHSKP 262
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N L+V GLS V ++ L+D FS G+V +V + + SRGF FV + +DA+
Sbjct: 62 NTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIK 121
Query: 97 SMNGKALLGRPLRISFALEKARGVPI 122
+N L GR + + + K P
Sbjct: 122 HLNQSVLEGRYITVERSRRKRARTPT 147
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++FVGGL + E +++ +FG + IV DK++G S+G+GF I+ A
Sbjct: 298 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 357
Query: 97 SMNGKALLGRPLRISFALEKARGVP 121
++NG + + L + A A P
Sbjct: 358 ALNGLKMGDKTLTVRRATVSAHSKP 382
>Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC |
chr7:31471924-31467830 | 20130731
Length = 566
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG LS E++L+ S FGQV +R+V D +G SRG+ FV F E + + A M
Sbjct: 65 LFVGRLSRLTTEETLRKVMSEFGQVKNLRLVRDIVTGASRGYAFVEFETEREMRRA--YM 122
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPR 126
+ L+ I + + +P +PR
Sbjct: 123 DAHHLIVDDCEIIVDYNRQQLMPGWIPR 150
>Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr2:28910323-28904195 | 20130731
Length = 415
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V LS +V+E L++ FS+FG+V V +V D+ +G+G+V F +A+ A M
Sbjct: 102 LHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYM 161
Query: 99 NGKALLGRPLRISFAL---EKARGVPIVV------PRFSNIG 131
+G + G ++ F L +KA P V PR N G
Sbjct: 162 DGAQIDGNVVKARFTLPPRQKASPPPKAVAPKRDAPRTDNAG 203
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++FVGGL + E +++ +FG + IV DK++G S+G+GF I+ A
Sbjct: 283 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 342
Query: 97 SMNGKALLGRPLRISFALEKARGVP 121
++NG + + L + A A P
Sbjct: 343 ALNGLKMGDKTLTVRRATVSAHSKP 367
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+++VGG+ + L++ G+V +VRI+ KD+ ++GF FV + + A A +
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 98 MNGKALLGRPLRISFALEKARGVPIVVPR 126
+N GR ++ S + K R +PR
Sbjct: 171 LNNTEFKGRKIKCSTSQAKNRLFIGNIPR 199
>Medtr8g015930.1 | embryo defective 140 protein | HC |
chr8:5265897-5253842 | 20130731
Length = 830
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 40 FVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMN 99
F+ L+ + ++ ++D FS G + +RI++DK +G+SRG +V F +D+ A + N
Sbjct: 655 FLSNLNPTANDGHIRDFFSDIGGIVAIRILHDKFTGKSRGLAYVDF-LDDEHLVAAVAKN 713
Query: 100 GKALLGRPLRISFALEKARGVPIVVPRFS 128
LLG+ L I+ + K G P+ S
Sbjct: 714 KNTLLGKKLSIARSNPKRGGKETSNPKKS 742
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 47.4 bits (111), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
++++VGG+ + L++ G+V +VRI+ KD+ ++GF FV + + A A +
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVVPR 126
+N GR ++ S + K R +PR
Sbjct: 170 ELNNTEFKGRKIKCSTSQAKNRLFIGNIPR 199
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 47.4 bits (111), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
++++VGG+ + L++ G+V +VRI+ KD+ ++GF FV + + A A +
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVVPR 126
+N GR ++ S + K R +PR
Sbjct: 170 ELNNTEFKGRKIKCSTSQAKNRLFIGNIPR 199
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 47.4 bits (111), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
++++VGG+ + L++ G+V +VRI+ KD+ ++GF FV + + A A +
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVVPR 126
+N GR ++ S + K R +PR
Sbjct: 170 ELNNTEFKGRKIKCSTSQAKNRLFIGNIPR 199
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N L+V LS V + L D F +G + V S +R + FV F DDAK+AK+
Sbjct: 27 NNLYVANLSPDVTDSDLMDLFVQYGALDSVT------SYSARNYAFVFFKRIDDAKAAKN 80
Query: 97 SMNGKALLGRPLRISFA 113
++ G G LRI FA
Sbjct: 81 ALQGFNFRGNSLRIEFA 97
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N L+V LS V + L D F +G + V S +R + FV F DDAK+AK+
Sbjct: 27 NNLYVANLSPDVTDSDLMDLFVQYGALDSVT------SYSARNYAFVFFKRIDDAKAAKN 80
Query: 97 SMNGKALLGRPLRISFA 113
++ G G LRI FA
Sbjct: 81 ALQGFNFRGNSLRIEFA 97
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
LFV + K +++ F S G+V +++ ++ R G+GFV + ++ +A A
Sbjct: 184 LFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAE 243
Query: 98 MNGKALLGRPLRIS 111
GK +GRPLR++
Sbjct: 244 FQGKNFMGRPLRVA 257
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
LFV + K +++ F S G+V +++ ++ R G+GFV + ++ +A A
Sbjct: 184 LFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAE 243
Query: 98 MNGKALLGRPLRIS 111
GK +GRPLR++
Sbjct: 244 FQGKNFMGRPLRVA 257
>Medtr4g063557.3 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL++ L + V +++ FS G + + YD+ SGRS+G V+FS DA +A
Sbjct: 95 KLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDR-SGRSKGTAEVVFSRRQDAVAAVKR 153
Query: 98 MNGKALLGRPLRISFA---LEKARGVPIVVPRFSNIGNLN 134
N L G+P++I + P+V + IGN N
Sbjct: 154 YNNVQLDGKPMKIEIVGTNISTPGAAPVV---NAPIGNFN 190
>Medtr4g063557.2 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL++ L + V +++ FS G + + YD+ SGRS+G V+FS DA +A
Sbjct: 95 KLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDR-SGRSKGTAEVVFSRRQDAVAAVKR 153
Query: 98 MNGKALLGRPLRISFA---LEKARGVPIVVPRFSNIGNLN 134
N L G+P++I + P+V + IGN N
Sbjct: 154 YNNVQLDGKPMKIEIVGTNISTPGAAPVV---NAPIGNFN 190
>Medtr4g063557.1 | RNA and export factor-binding protein | HC |
chr4:23458840-23463583 | 20130731
Length = 263
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL++ L + V +++ FS G + + YD+ SGRS+G V+FS DA +A
Sbjct: 95 KLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDR-SGRSKGTAEVVFSRRQDAVAAVKR 153
Query: 98 MNGKALLGRPLRISFA---LEKARGVPIVVPRFSNIGNLN 134
N L G+P++I + P+V + IGN N
Sbjct: 154 YNNVQLDGKPMKIEIVGTNISTPGAAPVV---NAPIGNFN 190
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L ++++ L F FG++ +++ D+ +G S+G+GFV ++ A +A +M
Sbjct: 453 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAM 512
Query: 99 NGKALLGRPLRISFA 113
NG L GR + + A
Sbjct: 513 NGYRLEGRTIAVRVA 527
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 46.6 bits (109), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++FVGGL E+ L+ F G+V EVR+ + + ++RG+ V F+ ++ AK A
Sbjct: 418 HEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALS 477
Query: 97 SMNGKALLGR 106
M + G+
Sbjct: 478 EMKNPVIRGK 487
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 46.6 bits (109), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++FVGGL E+ L+ F G+V EVR+ + + ++RG+ V F+ ++ AK A
Sbjct: 418 HEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALS 477
Query: 97 SMNGKALLGR 106
M + G+
Sbjct: 478 EMKNPVIRGK 487
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V +++ L F +G+V ++ I D+ +G SRGF FV + D+A A D +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 99 NGKALLGRPLRISFA 113
+G+ + GR + + FA
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V +++ L F +G+V ++ I D+ +G SRGF FV + D+A A D +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 99 NGKALLGRPLRISFA 113
+G+ + GR + + FA
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V +++ L F +G+V ++ I D+ +G SRGF FV + D+A A D +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 99 NGKALLGRPLRISFA 113
+G+ + GR + + FA
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V +++ L F +G+V ++ I D+ +G SRGF FV + D+A A D +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 99 NGKALLGRPLRISFA 113
+G+ + GR + + FA
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 46.6 bits (109), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++FVGGL E+ L+ F G+V EVR+ + + ++RG+ V F+ ++ AK A
Sbjct: 418 HEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALS 477
Query: 97 SMNGKALLGR 106
M + G+
Sbjct: 478 EMKNPVIRGK 487
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V +++ L F +G+V ++ I D+ +G SRGF FV + D+A A D +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 99 NGKALLGRPLRISFA 113
+G+ + GR + + FA
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V +++ L F +G+V ++ I D+ +G SRGF FV + D+A A D +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 99 NGKALLGRPLRISFA 113
+G+ + GR + + FA
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V +++ L F +G+V ++ I D+ +G SRGF FV + D+A A D +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 99 NGKALLGRPLRISFA 113
+G+ + GR + + FA
Sbjct: 78 DGRMVDGREITVQFA 92
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V +++ L F +G+V ++ I D+ +G SRGF FV + D+A A D +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 99 NGKALLGRPLRISFA 113
+G+ + GR + + FA
Sbjct: 78 DGRMVDGREITVQFA 92