Miyakogusa Predicted Gene

Lj6g3v1050180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1050180.1 tr|B9IM52|B9IM52_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_578659 PE=4
SV=1,41.6,0.0000000009,seg,NULL,CUFF.58832.1
         (306 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g116000.1 | transmembrane protein, putative | HC | chr1:52...   216   2e-56
Medtr4g129330.1 | transmembrane protein, putative | HC | chr4:53...   169   3e-42

>Medtr1g116000.1 | transmembrane protein, putative | HC |
           chr1:52420234-52419232 | 20130731
          Length = 289

 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/281 (44%), Positives = 155/281 (55%), Gaps = 14/281 (4%)

Query: 20  DSLRILLHNKLLFCXXXXXXXXXXXXXXXXXXXXXXXXRYQIYHLQALARVVSTRVESGH 79
           + +R++ +NKL+                          R  IYHL+ALA   ST +E+ H
Sbjct: 14  EPVRVIHNNKLVLLFIALFTTLPLSFLLFTLSITTHTLRSHIYHLEALALFTSTLMEARH 73

Query: 80  VLEESRVNAISLIRTRGXXXXXXXXXXXXXXXXXXHATISSFNGKHASVSSAITAVKTTW 139
           V  ESR NA+ L+R R                   H T +   GK  +V+S +TAVK  W
Sbjct: 74  VWHESRDNAVYLLRIRALFLLICLPLSLAAAVSSVHTTYNFIQGKSVTVNSVVTAVKENW 133

Query: 140 KRPSVTAIFAYTILFAFSPVPRVL--AFVFPAARLPILAVGSVVEVYLMAVMSLGIVVSV 197
           KRP VTAIF Y ILF FS VPRV+  AF  P  R  I+A+G   EVYLM VM LG+VVSV
Sbjct: 134 KRPFVTAIFVYVILFVFSSVPRVISSAFTSPELRFIIMAIGFGFEVYLMGVMGLGMVVSV 193

Query: 198 AEERLGWEAVTVGSGLMRGRR-VCGWXXXXXXXXXXXXINRRVEELLEGEDS-ISVWDRT 255
            EER G EA+TVGS LMRG+R + GW            +N RVE LLEG +S ISVWD T
Sbjct: 194 VEERTGLEAITVGSDLMRGKRLIFGWLLSGLFVLVSGFMNGRVEVLLEGTNSEISVWDET 253

Query: 256 VLICWYGLVVLLSYVITTVFYCDSRKRHAIREPQVEEDDDC 296
           +LIC YG +V+ SYV+TTVFYC SR          E+  DC
Sbjct: 254 ILICSYGFIVVFSYVVTTVFYCYSR----------EQQPDC 284


>Medtr4g129330.1 | transmembrane protein, putative | HC |
           chr4:53878983-53877788 | 20130731
          Length = 298

 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 12  ISPLKILFDSLRILLHNKLLFCXXXXXXXXXXXXXXXXXXXXXXXXRYQIYHLQALARVV 71
            +P KILF+SL+IL  NK LF                           QI HL+ALA   
Sbjct: 11  FTPFKILFNSLQILTTNKFLFTTIFLLTTLPLSILSIYQSIFTHQLTSQIRHLEALAHFA 70

Query: 72  STRVESGHVLEESRVNAISLIRTRGXXXXXXXXXXXXXXXXXXHATISSFNGKHASVSSA 131
           ST  E+ HV  ESR NA+ LIR +                   H+++        +V+SA
Sbjct: 71  STHFEARHVWHESRDNAVFLIRIKALFSFPAYVFSLIATLAAVHSSLI----PTPTVNSA 126

Query: 132 ITAVKTTWKRPSVTAIFAYTILFAFSPVPRVLAFVFPAARLPILAVGSVVEVYLMAVMSL 191
           + ++K    R  VT+IF Y  LF FS +P  L      + L +L   S +EVYLMAV+S+
Sbjct: 127 VASLKPNIMRVFVTSIFVYFTLFVFSSLPFFLN-ALTGSHLLVLIFRSGLEVYLMAVLSV 185

Query: 192 GIVVSVAEERLGWEAVTVGSGLMRGRRVCGWXXXXXXXXXXXXINRRVEELLEGED-SIS 250
           G+VVSVAEER GWEA+  GS LM G RVCG+            I  R+E+ ++GED S+ 
Sbjct: 186 GLVVSVAEERFGWEAIKTGSDLMEGNRVCGFVLSGLFVWVSSLIRWRIEKSMDGEDSSMG 245

Query: 251 VWDRTVLICWYGLVVLLSYVITTVFYCDSRKRHAIREPQVEEDDDCEGSVLV 302
             ++  +I  YG VVLLSYVI TV+Y + RKRH I+E    +D+D E  + V
Sbjct: 246 FEEKVYVIVCYGFVVLLSYVIMTVYYSECRKRHPIKEFHQVDDEDQETQLSV 297