Miyakogusa Predicted Gene

Lj6g3v1048930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1048930.1 tr|F4Q6Z5|F4Q6Z5_DICFS Transmembrane protein
OS=Dictyostelium fasciculatum (strain SH3) GN=tmem208
P,35.29,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,Protein of
unknown function DUF788, TMEM208; DUF788,Prote,CUFF.58815.1
         (173 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g130180.1 | transmembrane protein | HC | chr4:54203372-542...   293   7e-80

>Medtr4g130180.1 | transmembrane protein | HC |
           chr4:54203372-54207460 | 20130731
          Length = 173

 Score =  293 bits (749), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 137/173 (79%), Positives = 147/173 (84%)

Query: 1   MANQGAKKRKEENVRHMARLRQVIIACNVVYVLIRMLIFHSSFTWKHWIGLVITSAAYLI 60
           MANQGAKKRKEEN RH+ +LR +IIACNV+Y++IRMLIFHSSFTWKHWIGLV+TS AY  
Sbjct: 1   MANQGAKKRKEENSRHITKLRHIIIACNVIYLIIRMLIFHSSFTWKHWIGLVLTSLAYYF 60

Query: 61  PYQQLAKMANPAYAQDGELLDGGFDMTTGGVCGYLHDVIYITCFVQVMSIISGKFWYIYL 120
           PYQQLAKMA P+Y QDGELLDGGFDMTTGGVCGYLHDVIYITCFVQV SIISGKFWYIYL
Sbjct: 61  PYQQLAKMAKPSYTQDGELLDGGFDMTTGGVCGYLHDVIYITCFVQVASIISGKFWYIYL 120

Query: 121 VIPAFGLYQSFGFIRGFLPQGSEESVXXXXXXXXXXXXXXXASRPKFVKSRTR 173
           VIPAFG YQSFG I+GFLPQGSEESV               ASRPKFVK+RTR
Sbjct: 121 VIPAFGAYQSFGLIKGFLPQGSEESVEDEKTRKKREKMEKKASRPKFVKTRTR 173