Miyakogusa Predicted Gene

Lj6g3v1038840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1038840.1 tr|J7GY52|J7GY52_NEMVE Vasa-like protein
(Fragment) OS=Nematostella vectensis PE=2 SV=1,32.78,3e-18,Retrovirus
zinc finger-like domains,Zinc finger, CCHC-type; ZF_CCHC,Zinc finger,
CCHC-type; no descr,CUFF.58804.1
         (562 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g468600.1 | zinc knuckle (CCHC-type) family protein | HC |...    51   3e-06

>Medtr8g468600.1 | zinc knuckle (CCHC-type) family protein | HC |
           chr8:24863982-24868612 | 20130731
          Length = 392

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 22/104 (21%)

Query: 176 CYNCGEEGHAAVNCTAAK-----RKKPCYVCGGLGHSAKQC------------IKGHDCY 218
           C NCG EGH    C   K     R+  C +CG  GH+ + C            IK H C 
Sbjct: 277 CQNCGREGHRRHYCPELKDGLIDRRFTCRLCGEKGHNRRTCSKLRISHSDGRVIKHHRCK 336

Query: 219 ICKKGGHRAKDCPE-----KYTRASKSLTVCLRCGNSGHDMFSC 257
           IC++ GH  + CP+     +    S+ +  C  C   GH+  +C
Sbjct: 337 ICRQYGHNRRTCPQVISNKRMDMTSQRVYKCRLCQKEGHNSRTC 380