Miyakogusa Predicted Gene

Lj6g3v1008210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1008210.1 Non Characterized Hit- tr|K4AT96|K4AT96_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,42.19,0.00000000000002,zf-RING_3,NULL,CUFF.58759.1
         (145 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g088720.1 | zinc finger, C3HC4 type (RING finger) protein ...   179   1e-45
Medtr5g088720.3 | zinc finger, C3HC4 type (RING finger) protein ...   177   2e-45
Medtr5g088720.2 | zinc finger, C3HC4 type (RING finger) protein ...   177   3e-45
Medtr0067s0100.2 | zinc finger, C3HC4 type (RING finger) protein...   171   1e-43
Medtr0067s0100.1 | zinc finger, C3HC4 type (RING finger) protein...   171   1e-43

>Medtr5g088720.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr5:38507448-38514051 | 20130731
          Length = 371

 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/147 (61%), Positives = 105/147 (71%), Gaps = 4/147 (2%)

Query: 1   MSSVATYWCYTCRQPILLAGRDVTCPYCDGSFVQELNERQGIAPQHGFSSLD---PQAPD 57
           MSS AT+WCY C +PI+L GRDV CPYCD  FVQELNE +G APQ+ F S      Q PD
Sbjct: 47  MSSGATHWCYECNRPIVLEGRDVVCPYCDEGFVQELNEMRGTAPQNTFPSRSGEFNQMPD 106

Query: 58  IFDAIHSVIGQRGSAPRIGLRDAVDSYMRRRMAGNRDPNFDIRRGSGSGLVPEQTWGVFS 117
           +FDAIH+ +G RGS  R GL DAVD++MR RMAG   PNFD+R  S S  VPEQ WGV+S
Sbjct: 107 LFDAIHAFVGHRGSDNRFGLMDAVDNFMRHRMAG-MHPNFDVRGRSSSVPVPEQGWGVYS 165

Query: 118 SGSYLIVHDQGPGFSLPTGSSRGVPRR 144
           SG +L+ H Q PG +LP GS RG PRR
Sbjct: 166 SGPFLVFHGQVPGLTLPNGSPRGGPRR 192


>Medtr5g088720.3 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr5:38509472-38514051 | 20130731
          Length = 330

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/147 (61%), Positives = 105/147 (71%), Gaps = 4/147 (2%)

Query: 1   MSSVATYWCYTCRQPILLAGRDVTCPYCDGSFVQELNERQGIAPQHGFSSLD---PQAPD 57
           MSS AT+WCY C +PI+L GRDV CPYCD  FVQELNE +G APQ+ F S      Q PD
Sbjct: 6   MSSGATHWCYECNRPIVLEGRDVVCPYCDEGFVQELNEMRGTAPQNTFPSRSGEFNQMPD 65

Query: 58  IFDAIHSVIGQRGSAPRIGLRDAVDSYMRRRMAGNRDPNFDIRRGSGSGLVPEQTWGVFS 117
           +FDAIH+ +G RGS  R GL DAVD++MR RMAG   PNFD+R  S S  VPEQ WGV+S
Sbjct: 66  LFDAIHAFVGHRGSDNRFGLMDAVDNFMRHRMAG-MHPNFDVRGRSSSVPVPEQGWGVYS 124

Query: 118 SGSYLIVHDQGPGFSLPTGSSRGVPRR 144
           SG +L+ H Q PG +LP GS RG PRR
Sbjct: 125 SGPFLVFHGQVPGLTLPNGSPRGGPRR 151


>Medtr5g088720.2 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr5:38513074-38514051 | 20130731
          Length = 325

 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/147 (61%), Positives = 105/147 (71%), Gaps = 4/147 (2%)

Query: 1   MSSVATYWCYTCRQPILLAGRDVTCPYCDGSFVQELNERQGIAPQHGFSSLD---PQAPD 57
           MSS AT+WCY C +PI+L GRDV CPYCD  FVQELNE +G APQ+ F S      Q PD
Sbjct: 1   MSSGATHWCYECNRPIVLEGRDVVCPYCDEGFVQELNEMRGTAPQNTFPSRSGEFNQMPD 60

Query: 58  IFDAIHSVIGQRGSAPRIGLRDAVDSYMRRRMAGNRDPNFDIRRGSGSGLVPEQTWGVFS 117
           +FDAIH+ +G RGS  R GL DAVD++MR RMAG   PNFD+R  S S  VPEQ WGV+S
Sbjct: 61  LFDAIHAFVGHRGSDNRFGLMDAVDNFMRHRMAG-MHPNFDVRGRSSSVPVPEQGWGVYS 119

Query: 118 SGSYLIVHDQGPGFSLPTGSSRGVPRR 144
           SG +L+ H Q PG +LP GS RG PRR
Sbjct: 120 SGPFLVFHGQVPGLTLPNGSPRGGPRR 146


>Medtr0067s0100.2 | zinc finger, C3HC4 type (RING finger) protein |
           HC | scaffold0067:36395-39112 | 20130731
          Length = 280

 Score =  171 bits (434), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/145 (62%), Positives = 103/145 (71%), Gaps = 10/145 (6%)

Query: 1   MSSVATYWCYTCRQPILLAGRDVTCPYCDGSFVQELNERQGIAPQHGFSSLDPQAPDIFD 60
           MS  AT+WC+TCR+PILLAGRD  CPYCDG FVQE++E +G+A            PDIFD
Sbjct: 2   MSRRATFWCHTCREPILLAGRDAVCPYCDGGFVQEMHENRGLASSSQLEEFQ-DDPDIFD 60

Query: 61  AIHSVIGQRGSAPRIGLRDAVDSYMRRRMAGNRDPNFDIRRGSGSGLVPEQTWGVF-SSG 119
           AIH+V+ QRGS PRIG RDA+DSYMR+RM G R  NFD+RR S SG VPEQTWGVF SSG
Sbjct: 61  AIHAVVSQRGSVPRIGFRDAIDSYMRQRMDG-RTTNFDVRRRSVSGSVPEQTWGVFSSSG 119

Query: 120 SYLIVHDQGPGFSLPTGSSRGVPRR 144
            YLI   Q P       +SRG PRR
Sbjct: 120 RYLIFQGQTP-------TSRGDPRR 137


>Medtr0067s0100.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | scaffold0067:36429-39008 | 20130731
          Length = 280

 Score =  171 bits (434), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/145 (62%), Positives = 103/145 (71%), Gaps = 10/145 (6%)

Query: 1   MSSVATYWCYTCRQPILLAGRDVTCPYCDGSFVQELNERQGIAPQHGFSSLDPQAPDIFD 60
           MS  AT+WC+TCR+PILLAGRD  CPYCDG FVQE++E +G+A            PDIFD
Sbjct: 2   MSRRATFWCHTCREPILLAGRDAVCPYCDGGFVQEMHENRGLASSSQLEEFQ-DDPDIFD 60

Query: 61  AIHSVIGQRGSAPRIGLRDAVDSYMRRRMAGNRDPNFDIRRGSGSGLVPEQTWGVF-SSG 119
           AIH+V+ QRGS PRIG RDA+DSYMR+RM G R  NFD+RR S SG VPEQTWGVF SSG
Sbjct: 61  AIHAVVSQRGSVPRIGFRDAIDSYMRQRMDG-RTTNFDVRRRSVSGSVPEQTWGVFSSSG 119

Query: 120 SYLIVHDQGPGFSLPTGSSRGVPRR 144
            YLI   Q P       +SRG PRR
Sbjct: 120 RYLIFQGQTP-------TSRGDPRR 137