Miyakogusa Predicted Gene

Lj6g3v0927150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0927150.1 tr|B9H831|B9H831_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_761152 PE=4
SV=1,55.79,1e-16,VQ,VQ; seg,NULL,CUFF.58605.1
         (184 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g047190.1 | hypothetical protein | HC | chr3:15689968-1568...   156   9e-39

>Medtr3g047190.1 | hypothetical protein | HC |
           chr3:15689968-15689254 | 20130731
          Length = 184

 Score =  156 bits (395), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/189 (52%), Positives = 125/189 (66%), Gaps = 10/189 (5%)

Query: 1   MGKKVVNQAS-VKISKD---EKQKFNSLIKVLRPKVYITDSSSFKNLVQELTGNGSSTTL 56
           MGKKV+NQAS +K SK+   EKQ+FN+LIKVL+PKVYIT SS FK LVQELTGNG++ TL
Sbjct: 1   MGKKVINQASSLKSSKNIIHEKQQFNNLIKVLKPKVYITKSSCFKKLVQELTGNGNTNTL 60

Query: 57  SPPPLEQQNMVHNFPLIGTEFQRSPESSVDXXXXXXXXXXXXXXXCYYAELMNEEFNQVC 116
            P  LE   +V +  +I +E      +S                      L+NEEFNQVC
Sbjct: 61  FPQTLEVPKVVESCNIIESETSSVENASFSPEATSYNSSNTSEFSS--DALLNEEFNQVC 118

Query: 117 DQLCLDD-LVFQDSVTNQSNLDQMLAYQNLESLLFDVEPQLDPFFYNCCYEQMAQPEISI 175
           +QLCLD+ L FQDS  N+   DQ+ A+QNLESLLFDVE   +P FY+  YEQ+   ++SI
Sbjct: 119 NQLCLDESLFFQDSFLNEPLDDQLSAFQNLESLLFDVET--NPPFYS-FYEQIEMADVSI 175

Query: 176 FDYELSGLL 184
           +DYELSGLL
Sbjct: 176 YDYELSGLL 184