Miyakogusa Predicted Gene

Lj6g3v0925660.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0925660.2 Non Characterized Hit- tr|I1KY35|I1KY35_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45513
PE,63.99,0,PIF1,DNA helicase PIF1, ATP-dependent; SUBFAMILY NOT
NAMED,NULL; DNA HELICASE-RELATED,NULL,CUFF.58561.2
         (350 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g100990.1 | PIF1 helicase | LC | chr3:46469598-46471799 | ...    62   1e-09
Medtr3g109050.1 | PIF1-like helicase | LC | chr3:50410353-504096...    56   4e-08
Medtr0014s0220.1 | PIF1-like helicase | LC | scaffold0014:127807...    55   9e-08
Medtr3g034020.1 | PIF1-like helicase | LC | chr3:10967879-109695...    52   1e-06

>Medtr3g100990.1 | PIF1 helicase | LC | chr3:46469598-46471799 |
           20130731
          Length = 505

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 30/217 (13%)

Query: 116 PLNEDVKRVNEARLKSLKKDLVVYKAVD--------FGKGHWKWM----LN----SGIAP 159
           P  E V++VN+  +  +  D   Y + D         G  H +W+    LN    SG+  
Sbjct: 296 PTLELVEKVNDYVMAMIPGDEKEYLSCDSVCKCDDDIGVDH-RWITTDFLNDIKCSGMPN 354

Query: 160 KEISLCEGARVMLIKNINTESGLVNGATGTVLRFSHSSAKDLGRICPDQVMPVVQFDAGQ 219
             + L  G  VML++N++  SGL NG    ++    S  K++  IC   +       AG+
Sbjct: 355 HRLCLKVGVPVMLLRNVDQASGLCNGTRLIIV----SLGKNV--ICARVIGGT---HAGE 405

Query: 220 CMPVTPEKWEVLDGENVVAC--RKQVPLILAWAMSIHKCQGMTLERLHTDLSR-AFGCGM 276
              + P    +  G NV     R Q PL+L++AM+I+K QG TL  +   L R  F  G 
Sbjct: 406 VSYI-PRMNLIPSGANVSITFERCQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQ 464

Query: 277 VYVALSRLRSLEGLHLSSFDRSKIKANQKVSRFYKSL 313
           +YVA+SR++S  GL +   D +   ++  V+  Y+ +
Sbjct: 465 LYVAVSRVKSRSGLKILITDENGSPSSSTVNVVYQEV 501


>Medtr3g109050.1 | PIF1-like helicase | LC | chr3:50410353-50409637
           | 20130731
          Length = 222

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 23/152 (15%)

Query: 154 NSGIAPKEISLCEGARVMLIKNINTESGLVNGATGTVLRFSHSS-------AKDLGRICP 206
           +SGI  + + L     VML++NI+  +GL NG   TV     S+        K  G    
Sbjct: 66  SSGIPNRWLKLRVRCPVMLMRNIDQTNGLSNGTRLTVTHLGKSTIAATIITGKRAGTRVF 125

Query: 207 DQVMPVVQFDAGQCMPVTPEKWEVLDGENVVACRKQVPLILAWAMSIHKCQGMTLERLHT 266
              M ++  D G      P K+           RKQ PL L +AM+I+K QG +L R+  
Sbjct: 126 IPKMNLIPSDLG-----LPFKFR----------RKQFPLTLCFAMTINKSQGQSLSRVGD 170

Query: 267 DLSR-AFGCGMVYVALSRLRSLEGLHLSSFDR 297
            L +  F  G +YV ++R+ S +GL L   D+
Sbjct: 171 YLPKPVFTHGQLYVVVNRVTSRKGLKLLILDK 202


>Medtr0014s0220.1 | PIF1-like helicase | LC |
           scaffold0014:127807-132099 | 20130731
          Length = 833

 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 23/141 (16%)

Query: 154 NSGIAPKEISLCEGARVMLIKNINTESGLVNGATGTVLRFSHS-------SAKDLGRICP 206
            SG+   +I L     +ML++N++   GL NG    V R ++        S K++G +  
Sbjct: 492 TSGLPNHKIKLKVRTPIMLLRNLDQVEGLCNGTRLIVTRMANHVIEAKIISGKNVGNLT- 550

Query: 207 DQVMPVVQFDAGQCMPVTPEKWEVLDGENVVACRKQVPLILAWAMSIHKCQGMTLERLHT 266
              +P +     Q    +P  ++++        R+Q P+I+++AM+I+K QG TL+ +  
Sbjct: 551 --YIPRMSMSPSQ----SPWPFKLI--------RRQFPIIVSYAMTINKSQGQTLDSVGL 596

Query: 267 DLSRA-FGCGMVYVALSRLRS 286
            L R+ F  G + VA SR+R+
Sbjct: 597 YLPRSVFSHGQLCVAFSRIRT 617


>Medtr3g034020.1 | PIF1-like helicase | LC | chr3:10967879-10969574
           | 20130731
          Length = 450

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 116/280 (41%), Gaps = 41/280 (14%)

Query: 22  KPWGGIQIVVSGDFFQLPPIADDYDEAMYAFDADCWNDSFDLQVELTRVFRQSDAGLARL 81
           +P+GG+ +V+ GDF Q+  +  +              D  D  +  ++++   +  + RL
Sbjct: 159 RPFGGMTVVLDGDFRQILSVVRNGSR----------EDIVDASINSSKIWVYCN--VLRL 206

Query: 82  LEGIRRGESEQH-DLEFLEQFCSKTKCDSSVVQIFPLNEDVKRVNEARLKSL----KKDL 136
              +R G S    + E +  F   T            N ++K VNE  +  +    K+ L
Sbjct: 207 TVNMRLGASSVPIEQEEIANFGKWTLSIGDGNDASDENGEMKHVNEYMMSLIPGEEKEYL 266

Query: 137 VVYKAVDFGKG---HWKWMLN---SGIAPKEIS-----LCEGARVMLIKNINTESGLVNG 185
             Y     G+      +W      +GI    IS     L  G+RVML++NIN  +GL NG
Sbjct: 267 SSYFVCRSGENSDVQSEWFTTEFLNGIKSSRISNHRLKLMVGSRVMLMRNINQANGLYNG 326

Query: 186 ATGTVLRFSHSS--AKDLGRICPDQVMPVVQFDAGQCMPVTPEKWEVLDGENVVACRKQV 243
              TV     S+  A  + R      + + + +     P  P K+           R Q 
Sbjct: 327 TRLTVTHLGKSTIAATVITRKRTGTRVFIPRMNLIPSDPGVPFKFR----------RMQF 376

Query: 244 PLILAWAMSIHKCQGMTLERLHTDLSR-AFGCGMVYVALS 282
           PL L +AM+I+K QG +L R+   L +  F  G+  + L+
Sbjct: 377 PLTLCFAMTINKSQGQSLSRVGVYLPKPVFTKGLKLLILN 416