Miyakogusa Predicted Gene

Lj6g3v0925650.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0925650.1 tr|B9GYY2|B9GYY2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_646195 PE=4 SV=1,52.41,0,PIF1,DNA
helicase PIF1, ATP-dependent; no description,NULL; P-loop containing
nucleoside triphosphat,CUFF.58560.1
         (529 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g100990.1 | PIF1 helicase | LC | chr3:46469598-46471799 | ...    53   9e-07

>Medtr3g100990.1 | PIF1 helicase | LC | chr3:46469598-46471799 |
           20130731
          Length = 505

 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 22/193 (11%)

Query: 280 LYPLNRIVKKVNEEKLKSLQKDVVFYRA------------VDDGW---NSWKKLLSQGIA 324
           L P   +V+KVN+  +  +  D   Y +            VD  W   +    +   G+ 
Sbjct: 294 LAPTLELVEKVNDYVMAMIPGDEKEYLSCDSVCKCDDDIGVDHRWITTDFLNDIKCSGMP 353

Query: 325 PDEISICLGARVMLVKNLKTWNGLVNGATGTVVKFVKEAGIGDICSENLLPEVKFDSGKV 384
              + + +G  VML++N+   +GL NG    +V   K      +       EV +   ++
Sbjct: 354 NHRLCLKVGVPVMLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGTHAGEVSYIP-RM 412

Query: 385 EVIGPEEWHVTDGDVVVARRKQIPLILAWALSIHKCQGMNLDKAYINLS-GAFGCGMVYT 443
            +I P   +V+    +   R Q PL+L++A++I+K QG  L    + L    F  G +Y 
Sbjct: 413 NLI-PSGANVS----ITFERCQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 467

Query: 444 ALSRVKSLDGLHL 456
           A+SRVKS  GL +
Sbjct: 468 AVSRVKSRSGLKI 480