Miyakogusa Predicted Gene

Lj6g3v0922200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0922200.1 tr|G7ISI4|G7ISI4_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_2g020100 PE=4 SV=1,60.71,0.65, ,105572_g.1
         (135 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g034630.1 | DUF295 family protein | LC | chr2:13246669-132...    84   4e-17
Medtr2g020080.1 | transmembrane protein, putative | LC | chr2:66...    80   4e-16
Medtr2g020150.1 | hypothetical protein | LC | chr2:6680303-66825...    62   2e-10

>Medtr2g034630.1 | DUF295 family protein | LC |
           chr2:13246669-13245225 | 20130731
          Length = 354

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 10/99 (10%)

Query: 27  NVSPCFHNGAFYYLNNKGELGIFKVVGEEDILWEEIVKPLPPFEISLYKIDPGGYYKCFL 86
           N+SP +HNG FY L+ KG+L + +    E I  +EI  P  P+           ++  FL
Sbjct: 196 NISPIYHNGLFYCLSMKGKLRVIEAT-REKINLKEIEGPQAPY---------NKHFNNFL 245

Query: 87  VECNGSLLLVFECAFGNWVQVFKLDESKMTWLQVESLEN 125
           +EC+G+LL V E +FG  V+VFKLDES MTW++VESL+N
Sbjct: 246 LECDGNLLAVLESSFGKGVKVFKLDESTMTWMKVESLKN 284


>Medtr2g020080.1 | transmembrane protein, putative | LC |
           chr2:6655531-6654608 | 20130731
          Length = 290

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 11/124 (8%)

Query: 3   VYMTRLGKKEWEEFSFEDCYFCFVNVSPCFHNGAFYYLNNKGELGIFKVVGEEDILWEEI 62
            Y+  L +   +  SF+D  F   + SP FHNG FY+L   G+L +      E I W+ +
Sbjct: 113 AYVHFLSEGVGDRISFKDLTFPHYSTSPAFHNGLFYFLILTGKLAVINPTRGE-ISWKVL 171

Query: 63  VKPLPPFEISLYKIDPGGYYKCFLVECNGSLLLVFECAFGN-WVQVFKLDESKMTWLQVE 121
            +P  P             +  FLVEC+G+LL VFE + G   V+VFKLDES MTW+++E
Sbjct: 172 EEPQAP---------CSSCFNNFLVECDGNLLAVFEISLGKEGVRVFKLDESTMTWMKIE 222

Query: 122 SLEN 125
           SL+N
Sbjct: 223 SLKN 226


>Medtr2g020150.1 | hypothetical protein | LC | chr2:6680303-6682594
           | 20130731
          Length = 356

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 9/67 (13%)

Query: 59  WEEIVKPLPPFEISLYKIDPGGYYKCFLVECNGSLLLVFECAFGNWVQVFKLDESKMTWL 118
           W+E+ +P  P            Y+  FLVEC+G+LL VFE + G  V+VF+L+ES MTW+
Sbjct: 278 WKELEEPQAPC---------NKYFNNFLVECDGNLLAVFEISLGKGVKVFELNESTMTWI 328

Query: 119 QVESLEN 125
           +VESLEN
Sbjct: 329 KVESLEN 335