Miyakogusa Predicted Gene

Lj6g3v0920410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0920410.1 Non Characterized Hit- tr|D7TZU9|D7TZU9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,35.77,0.000000000000009,SM-ATX,SM domain found in ataxin-2;
OS04G0625900 PROTEIN,NULL; ATAXIN 2-RELATED,NULL;
seg,NULL,CUFF.58499.1
         (434 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g051270.1 | SM domain found in ataxin-2 protein | HC | chr...   428   e-120
Medtr3g051270.3 | SM domain found in ataxin-2 protein | HC | chr...   416   e-116
Medtr3g051270.2 | SM domain found in ataxin-2 protein | HC | chr...   392   e-109
Medtr2g099480.1 | CTC-interacting domain protein, putative | HC ...    80   4e-15
Medtr8g019560.2 | CTC-interacting domain protein | HC | chr8:691...    71   2e-12
Medtr8g019560.3 | CTC-interacting domain protein | HC | chr8:691...    71   2e-12
Medtr8g019560.1 | CTC-interacting domain protein | HC | chr8:691...    70   3e-12

>Medtr3g051270.1 | SM domain found in ataxin-2 protein | HC |
           chr3:20227730-20237934 | 20130731
          Length = 488

 Score =  428 bits (1101), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/459 (53%), Positives = 298/459 (64%), Gaps = 66/459 (14%)

Query: 22  ITDALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVG 81
           +++A+L  TM +IGLPVDVHVKDGSVYSGIF TAS ++ +GVVLK+ARM KKG+ +SNVG
Sbjct: 23  LSEAMLAITMSIIGLPVDVHVKDGSVYSGIFFTASTESNFGVVLKQARMTKKGRGHSNVG 82

Query: 82  EQALVDTLLIPSDDLVQVVSKGITLPSNGVGG----------TCEIENDVGPMIDAKLVN 131
            + LVDTL++ SDDLVQVV+KGITLP++GVGG          T E+ +     IDA+ VN
Sbjct: 83  NETLVDTLVVLSDDLVQVVAKGITLPADGVGGNITGDYEEAVTHEVCSAESRSIDAEQVN 142

Query: 132 QSSQAADVLSKGIADECRQKSEFANERSDEKIQSSNSSHEIDTCVGEVE---AVERGSAD 188
           QS QA D  S G  D+C+QK EF N+  DEKIQS +S HEID C+G VE   A ++GS  
Sbjct: 143 QSRQAGDKNSNGKPDDCKQKFEF-NKNKDEKIQSLHSGHEIDACLGRVEADKANDQGSER 201

Query: 189 TTSSPHDNGLLCNNVPASVKANNSCTNSTLGVDLISESHDFPEKSVEISNPLGTDSIKNA 248
           +TS                  +++ T+STL  DL   SH+ P K +E S P GTD  +NA
Sbjct: 202 STS-----------------PDSTSTHSTLSEDLNEVSHNSPAKFIEKSAPRGTDCTRNA 244

Query: 249 KEFKLNPGAKLFSPSVVHPMIVTTALPTAPNMVYIPNSS--------------------- 287
           KEFKLNP AK+FSPS VHP   T+ +PT  NMVY+PNSS                     
Sbjct: 245 KEFKLNPAAKIFSPSFVHPNSATSTVPTTANMVYVPNSSPPANMVYLPNSSPPANMVYLP 304

Query: 288 -----LPTTTIQPERGFTTFASRPSAPVKVAQYNNFTAGNGGSGSQFSQPLA---HRTQP 339
                LP  TIQ E GF  FASRPS PVK +QY N T GN GSGSQF+QP+     RTQP
Sbjct: 305 NSSPPLPVATIQQEAGFNNFASRPSVPVKASQYGNLTVGNPGSGSQFTQPIVGQLTRTQP 364

Query: 340 LRYAAHYDPILSEPAYLQ-PNSPAVMAGRSTQLVY--PTSQDWIHGAMAMSPASARPLLN 396
           L+YAAHY P+LSEPAYLQ  +SPAVM GRSTQLVY    S D +HG  A  P S RP LN
Sbjct: 365 LQYAAHYTPVLSEPAYLQTTSSPAVMVGRSTQLVYVQQVSHDMVHGVTA--PFSTRPPLN 422

Query: 397 HVQYPKQQGGTVGQAMPACMHPPVLTS-GQQPFPLHSHI 434
           HVQ+ K QGGT GQA+P  + P V+TS  QQP+ + SHI
Sbjct: 423 HVQFQKHQGGTHGQAIPVVIPPSVITSLQQQPYEVQSHI 461


>Medtr3g051270.3 | SM domain found in ataxin-2 protein | HC |
           chr3:20227730-20238343 | 20130731
          Length = 479

 Score =  416 bits (1068), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/456 (52%), Positives = 293/456 (64%), Gaps = 69/456 (15%)

Query: 22  ITDALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVG 81
           +++A+L  TM +IGLPVDVHVKDGSVYSGIF TAS ++ +GVVLK+ARM KKG+ +SNVG
Sbjct: 23  LSEAMLAITMSIIGLPVDVHVKDGSVYSGIFFTASTESNFGVVLKQARMTKKGRGHSNVG 82

Query: 82  EQALVDTLLIPSDDLVQVVSKGITLPSNGVGG----------TCEIENDVGPMIDAKLVN 131
            + LVDTL++ SDDLVQVV+KGITLP++GVGG          T E+ +     IDA+ VN
Sbjct: 83  NETLVDTLVVLSDDLVQVVAKGITLPADGVGGNITGDYEEAVTHEVCSAESRSIDAEQVN 142

Query: 132 QSSQAADVLSKGIADECRQKSEFANERSDEKIQSSNSSHEIDTCVGEVEAVERGSADTTS 191
           QS QA D  S G  D+C+QK EF N+  DEKIQS +S HE D      +A ++GS  +TS
Sbjct: 143 QSRQAGDKNSNGKPDDCKQKFEF-NKNKDEKIQSLHSGHETD------KANDQGSERSTS 195

Query: 192 SPHDNGLLCNNVPASVKANNSCTNSTLGVDLISESHDFPEKSVEISNPLGTDSIKNAKEF 251
                             +++ T+STL  DL   SH+ P K +E S P GTD  +NAKEF
Sbjct: 196 -----------------PDSTSTHSTLSEDLNEVSHNSPAKFIEKSAPRGTDCTRNAKEF 238

Query: 252 KLNPGAKLFSPSVVHPMIVTTALPTAPNMVYIPNSS------------------------ 287
           KLNP AK+FSPS VHP   T+ +PT  NMVY+PNSS                        
Sbjct: 239 KLNPAAKIFSPSFVHPNSATSTVPTTANMVYVPNSSPPANMVYLPNSSPPANMVYLPNSS 298

Query: 288 --LPTTTIQPERGFTTFASRPSAPVKVAQYNNFTAGNGGSGSQFSQPLA---HRTQPLRY 342
             LP  TIQ E GF  FASRPS PVK +QY N T GN GSGSQF+QP+     RTQPL+Y
Sbjct: 299 PPLPVATIQQEAGFNNFASRPSVPVKASQYGNLTVGNPGSGSQFTQPIVGQLTRTQPLQY 358

Query: 343 AAHYDPILSEPAYLQ-PNSPAVMAGRSTQLVY--PTSQDWIHGAMAMSPASARPLLNHVQ 399
           AAHY P+LSEPAYLQ  +SPAVM GRSTQLVY    S D +HG  A  P S RP LNHVQ
Sbjct: 359 AAHYTPVLSEPAYLQTTSSPAVMVGRSTQLVYVQQVSHDMVHGVTA--PFSTRPPLNHVQ 416

Query: 400 YPKQQGGTVGQAMPACMHPPVLTS-GQQPFPLHSHI 434
           + K QGGT GQA+P  + P V+TS  QQP+ + SHI
Sbjct: 417 FQKHQGGTHGQAIPVVIPPSVITSLQQQPYEVQSHI 452


>Medtr3g051270.2 | SM domain found in ataxin-2 protein | HC |
           chr3:20227809-20238324 | 20130731
          Length = 463

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/459 (50%), Positives = 283/459 (61%), Gaps = 91/459 (19%)

Query: 22  ITDALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVG 81
           +++A+L  TM +IGLPVDVHVKDGSVYSGIF TAS ++ +GVVLK+ARM KKG+ +SNVG
Sbjct: 23  LSEAMLAITMSIIGLPVDVHVKDGSVYSGIFFTASTESNFGVVLKQARMTKKGRGHSNVG 82

Query: 82  EQALVDTLLIPSDDLVQVVSKGITLPSNGVGG----------TCEIENDVGPMIDAKLVN 131
            + LVDTL++ SDDLVQVV+KGITLP++GVGG          T E+ +     IDA+ VN
Sbjct: 83  NETLVDTLVVLSDDLVQVVAKGITLPADGVGGNITGDYEEAVTHEVCSAESRSIDAEQVN 142

Query: 132 QSSQAADVLSKGIADECRQKSEFANERSDEKIQSSNSSHEIDTCVGEVE---AVERGSAD 188
           QS QA D  S G  D+C+QK EF N+  DEKIQS +S HEID C+G VE   A ++GS  
Sbjct: 143 QSRQAGDKNSNGKPDDCKQKFEF-NKNKDEKIQSLHSGHEIDACLGRVEADKANDQGSER 201

Query: 189 TTSSPHDNGLLCNNVPASVKANNSCTNSTLGVDLISESHDFPEKSVEISNPLGTDSIKNA 248
           +TS                  +++ T+STL  DL                          
Sbjct: 202 STS-----------------PDSTSTHSTLSEDL-------------------------N 219

Query: 249 KEFKLNPGAKLFSPSVVHPMIVTTALPTAPNMVYIPNSS--------------------- 287
           +EFKLNP AK+FSPS VHP   T+ +PT  NMVY+PNSS                     
Sbjct: 220 EEFKLNPAAKIFSPSFVHPNSATSTVPTTANMVYVPNSSPPANMVYLPNSSPPANMVYLP 279

Query: 288 -----LPTTTIQPERGFTTFASRPSAPVKVAQYNNFTAGNGGSGSQFSQPLA---HRTQP 339
                LP  TIQ E GF  FASRPS PVK +QY N T GN GSGSQF+QP+     RTQP
Sbjct: 280 NSSPPLPVATIQQEAGFNNFASRPSVPVKASQYGNLTVGNPGSGSQFTQPIVGQLTRTQP 339

Query: 340 LRYAAHYDPILSEPAYLQ-PNSPAVMAGRSTQLVY--PTSQDWIHGAMAMSPASARPLLN 396
           L+YAAHY P+LSEPAYLQ  +SPAVM GRSTQLVY    S D +HG  A  P S RP LN
Sbjct: 340 LQYAAHYTPVLSEPAYLQTTSSPAVMVGRSTQLVYVQQVSHDMVHGVTA--PFSTRPPLN 397

Query: 397 HVQYPKQQGGTVGQAMPACMHPPVLTS-GQQPFPLHSHI 434
           HVQ+ K QGGT GQA+P  + P V+TS  QQP+ + SHI
Sbjct: 398 HVQFQKHQGGTHGQAIPVVIPPSVITSLQQQPYEVQSHI 436


>Medtr2g099480.1 | CTC-interacting domain protein, putative | HC |
           chr2:42641646-42649233 | 20130731
          Length = 613

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 6/118 (5%)

Query: 24  DALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKG-----KCNS 78
           D L+  T C+IG  V++ VK+GS+YSGIFH    D  +G++LK AR+ K       K  +
Sbjct: 39  DRLVYVTTCLIGQQVEIQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDASSQGKKSGA 98

Query: 79  NVGEQALVDTLLIPSDDLVQVVSKGITLPSNGVGGTCEIENDVGPMIDAKLVNQSSQA 136
               +A    L+IP+ +LVQV+++G+ +  +G+    +   +   M+D+ L++QS  A
Sbjct: 99  EFVSKAPSKILIIPAKELVQVIAQGVAVTKDGLPSEPQHGRNQEIMVDS-LISQSHHA 155


>Medtr8g019560.2 | CTC-interacting domain protein | HC |
           chr8:6913038-6903510 | 20130731
          Length = 638

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 24  DALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVGEQ 83
           D L+  T C+IG  V+V VK+GS+YSGIFH  + +  +G++LK A + K G         
Sbjct: 59  DRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTEKDFGIILKMACLTKDGSSQGQSSGA 118

Query: 84  ALV-----DTLLIPSDDLVQVVSKGITL 106
             V      TL+IP  +LVQV++K + +
Sbjct: 119 EFVSKAPSKTLIIPGKELVQVIAKDVAV 146


>Medtr8g019560.3 | CTC-interacting domain protein | HC |
           chr8:6913187-6903209 | 20130731
          Length = 636

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 24  DALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVGEQ 83
           D L+  T C+IG  V+V VK+GS+YSGIFH  + +  +G++LK A + K G         
Sbjct: 57  DRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTEKDFGIILKMACLTKDGSSQGQSSGA 116

Query: 84  ALV-----DTLLIPSDDLVQVVSKGITL 106
             V      TL+IP  +LVQV++K + +
Sbjct: 117 EFVSKAPSKTLIIPGKELVQVIAKDVAV 144


>Medtr8g019560.1 | CTC-interacting domain protein | HC |
           chr8:6911576-6903793 | 20130731
          Length = 668

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 24  DALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVGEQ 83
           D L+  T C+IG  V+V VK+GS+YSGIFH  + +  +G++LK A + K G         
Sbjct: 89  DRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTEKDFGIILKMACLTKDGSSQGQSSGA 148

Query: 84  ALV-----DTLLIPSDDLVQVVSKGITL 106
             V      TL+IP  +LVQV++K + +
Sbjct: 149 EFVSKAPSKTLIIPGKELVQVIAKDVAV 176