Miyakogusa Predicted Gene

Lj6g3v0920170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0920170.1 tr|G7IXK4|G7IXK4_MEDTR Vacuolar protein
sorting-associated protein-like protein OS=Medicago
truncatu,96,0,EAP30,EAP30; SUBFAMILY NOT NAMED,NULL; EAP30 SUBUNIT OF
ELL COMPLEX,EAP30; "Winged helix" DNA-bindin,CUFF.58482.1
         (250 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g051210.1 | vacuolar sorting protein SNF8 | HC | chr3:2020...   498   e-141
Medtr7g033650.1 | vacuolar sorting protein SNF8 | HC | chr7:1224...   486   e-137

>Medtr3g051210.1 | vacuolar sorting protein SNF8 | HC |
           chr3:20205015-20212262 | 20130731
          Length = 251

 Score =  498 bits (1281), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/250 (96%), Positives = 245/250 (98%)

Query: 1   MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQTAAAARDQY+ LGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQTAAAARDQYKKLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN 60

Query: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINL 120
           PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRP NGGLINL
Sbjct: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPLNGGLINL 120

Query: 121 QELCSLLRQRRKSDRGVVTEDDCLRAISKLKVLGSGFEVISVGKRKLVRSVPTELNKDHN 180
           QELC LLRQRRKSDRGVV+EDDCLRAISKLKVLGSGFEVISVGK+KLVRSVPTELNKDHN
Sbjct: 121 QELCQLLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVISVGKKKLVRSVPTELNKDHN 180

Query: 181 EILELAQAQGFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVS 240
           EILELAQ QGFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGH+DGKRRYWFPCVS
Sbjct: 181 EILELAQGQGFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHKDGKRRYWFPCVS 240

Query: 241 PISSLIGIDS 250
           PISSL GIDS
Sbjct: 241 PISSLTGIDS 250


>Medtr7g033650.1 | vacuolar sorting protein SNF8 | HC |
           chr7:12243843-12240747 | 20130731
          Length = 251

 Score =  486 bits (1250), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/250 (94%), Positives = 241/250 (96%)

Query: 1   MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQTAAAARDQY+ LGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQTAAAARDQYKKLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN 60

Query: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINL 120
           PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRP NGGLINL
Sbjct: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPLNGGLINL 120

Query: 121 QELCSLLRQRRKSDRGVVTEDDCLRAISKLKVLGSGFEVISVGKRKLVRSVPTELNKDHN 180
           QEL  LLRQRRKSDRGVV+EDDCLRAISKLKVLGSGFEVISVGK+KLVRSVPTELNKDHN
Sbjct: 121 QELSQLLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVISVGKKKLVRSVPTELNKDHN 180

Query: 181 EILELAQAQGFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVS 240
           EILELAQ QGFVTVDEVE+RLSW  GRAIDALDTLLDEGLAMIDDGH+DGKRRYWFPCVS
Sbjct: 181 EILELAQGQGFVTVDEVEKRLSWILGRAIDALDTLLDEGLAMIDDGHKDGKRRYWFPCVS 240

Query: 241 PISSLIGIDS 250
           PISSL  IDS
Sbjct: 241 PISSLTRIDS 250