Miyakogusa Predicted Gene

Lj6g3v0896580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0896580.1 Non Characterized Hit- tr|E1Z8V7|E1Z8V7_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,42.06,2e-18,seg,NULL; Ankyrin repeat,Ankyrin
repeat-containing domain; ANK_REP_REGION,Ankyrin repeat-containing
,NODE_75465_length_657_cov_68.515984.path1.1
         (175 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g019320.1 | LHCP translocation defect protein, putative | ...   272   1e-73

>Medtr3g019320.1 | LHCP translocation defect protein, putative | HC
           | chr3:5399261-5401081 | 20130731
          Length = 179

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/178 (75%), Positives = 141/178 (79%), Gaps = 5/178 (2%)

Query: 3   SSIACITHQPITXXXXXXXXXXXXXXXXXG--FLGIRR---RVGCLRLTSSIGPSNGSKA 57
           SSI CITHQPI                     FLGIR    R      TS  GPSNGS+ 
Sbjct: 2   SSITCITHQPIISNSKSLITSQVSSTNLSSSRFLGIRVKSVRWSSSSFTSKFGPSNGSRF 61

Query: 58  TCWFRFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQKIH 117
           TCWF+FGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQKIH
Sbjct: 62  TCWFKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQKIH 121

Query: 118 PVDILLLLAASEGDMPKIEELLRAGAKYDVRDGDGRTALDRANDEVKDFILNFSVQRA 175
           PVDILLLLA+SEGD+PKIEELL+AGAKYDV+D DGRTALDRAN EVKDFILNFSVQRA
Sbjct: 122 PVDILLLLASSEGDLPKIEELLKAGAKYDVKDADGRTALDRANSEVKDFILNFSVQRA 179